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PDB: 40736 件

6VGJ
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N-terminal variant of CXCL13
分子名称: C-X-C motif chemokine 13
著者Rosenberg Jr, E.M, Lolis, E.J.
登録日2020-01-08
公開日2020-10-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献The N-terminal length and side-chain composition of CXCL13 affect crystallization, structure and functional activity.
Acta Crystallogr D Struct Biol, 76, 2020
6MK7
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BU of 6mk7 by Molmil
Solution structure of the large extracellular loop of FtsX in Streptococcus pneumoniae
分子名称: Cell division protein FtsX
著者Edmonds, K.A, Fu, Y, Wu, H, Rued, B.E, Bruce, K.E, Winkler, M.E, Giedroc, D.P.
登録日2018-09-25
公開日2019-02-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the Large Extracellular Loop of FtsX and Its Interaction with the Essential Peptidoglycan Hydrolase PcsB in Streptococcus pneumoniae.
MBio, 10, 2019
7ABU
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Structure of SARS-CoV-2 Main Protease bound to RS102895
分子名称: 1'-[2-[4-(trifluoromethyl)phenyl]ethyl]spiro[1~{H}-3,1-benzoxazine-4,4'-piperidine]-2-one, 3C-like proteinase, DIMETHYL SULFOXIDE, ...
著者Guenther, S, Reinke, P.Y.A, Oberthuer, D, Yefanov, O, Gelisio, L, Ginn, H, Lieske, J, Domaracky, M, Brehm, W, Rahmani Mashour, A, White, T.A, Knoska, J, Pena Esperanza, G, Koua, F, Tolstikova, A, Groessler, M, Fischer, P, Hennicke, V, Fleckenstein, H, Trost, F, Galchenkova, M, Gevorkov, Y, Li, C, Awel, S, Paulraj, L.X, Ullah, N, Falke, S, Alves Franca, B, Schwinzer, M, Brognaro, H, Werner, N, Perbandt, M, Tidow, H, Seychell, B, Beck, T, Meier, S, Doyle, J.J, Giseler, H, Melo, D, Lane, T.J, Dunkel, I, Peck, A, Saouane, S, Hakanpaeae, J, Meyer, J, Noei, H, Gribbon, P, Ellinger, B, Kuzikov, M, Wolf, M, Zhang, L, Ehrt, C, Pletzer-Zelgert, J, Wollenhaupt, J, Feiler, C, Weiss, M, Schulz, E.C, Mehrabi, P, Norton-Baker, B, Schmidt, C, Lorenzen, K, Schubert, R, Han, H, Chari, A, Fernandez Garcia, Y, Turk, D, Hilgenfeld, R, Rarey, M, Zaliani, A, Chapman, H.N, Pearson, A, Betzel, C, Meents, A.
登録日2020-09-08
公開日2020-12-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease.
Science, 372, 2021
8CXM
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Cryo-EM structure of the supercoiled E. coli K12 flagellar filament core, Normal waveform
分子名称: Flagellin
著者Sonani, R.R, Kreutzberger, M.A.B, Sebastian, A.L, Scharf, B, Egelman, E.H.
登録日2022-05-21
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Convergent evolution in the supercoiling of prokaryotic flagellar filaments.
Cell, 185, 2022
6NBI
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Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
分子名称: CHOLESTEROL, Gs protein alpha subunit, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Zhao, L.-H, Ma, S, Sutkeviciute, I, Shen, D.-D, Zhou, X.E, de Waal, P.P, Li, C.-Y, Kang, Y, Clark, L.J, Jean-Alphonse, F.G, White, A.D, Xiao, K, Yang, D, Jiang, Y, Watanabe, T, Gardella, T.J, Melcher, K, Wang, M.-W, Vilardaga, J.-P, Xu, H.E, Zhang, Y.
登録日2018-12-07
公開日2019-04-17
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure and dynamics of the active human parathyroid hormone receptor-1.
Science, 364, 2019
7QOE
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Structure of a small alarmone hydrolase from Leptospira levettii
分子名称: HDc domain-containing protein, MANGANESE (II) ION
著者Bisiak, F, Brodersen, D.E, Chrenkova, A.
登録日2021-12-23
公開日2022-07-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural variations between small alarmone hydrolase dimers support different modes of regulation of the stringent response.
J.Biol.Chem., 298, 2022
5MDM
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Structural intermediates in the fusion associated transition of vesiculovirus glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Baquero, E, Albertini, A.A, Gaudin, Y, Bressanelli, S.
登録日2016-11-11
公開日2016-12-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.998 Å)
主引用文献Structural intermediates in the fusion-associated transition of vesiculovirus glycoprotein.
EMBO J., 36, 2017
6PMD
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Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ATP-dependent Clp protease proteolytic subunit, SHV-WFP-SER-PRO-YCP-ALA-MP8 Acyldepsipeptide
著者Griffith, E.C, Lee, R.E.
登録日2019-07-01
公開日2019-11-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Ureadepsipeptides as ClpP Activators.
Acs Infect Dis., 5, 2019
2NOQ
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BU of 2noq by Molmil
Structure of ribosome-bound cricket paralysis virus IRES RNA
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S5, ...
著者Schuler, M, Connell, S.R, Lescoute, A, Giesebrecht, J, Dabrowski, M, Schroeer, B, Mielke, T, Penczek, P.A, Westhof, E, Spahn, C.M.T.
登録日2006-10-26
公開日2006-11-21
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (7.3 Å)
主引用文献Structure of the ribosome-bound cricket paralysis virus IRES RNA.
Nat.Struct.Mol.Biol., 13, 2006
6PLH
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FAB fragment complexed with C-mannosylated tryptophan peptide
分子名称: Fab 5G12 heavy chain, Fab 5G12 light chain, Interleukin-21 receptor, ...
著者John, A, Jarva, M.A, Goddard-Borger, E.D.
登録日2019-06-30
公開日2020-07-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Yeast- and antibody-based tools for studying tryptophan C-mannosylation.
Nat.Chem.Biol., 17, 2021
7OQH
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BU of 7oqh by Molmil
CryoEM structure of the transcription termination factor Rho from Mycobacterium tuberculosis
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Transcription termination factor Rho
著者Saridakis, E, Vishwakarma, R, Lai Kee Him, J, Martin, K, Simon, I, Cohen-Gonsaud, M, Coste, F, Bron, P, Margeat, E, Boudvillain, M.
登録日2021-06-03
公開日2022-02-09
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.32 Å)
主引用文献Cryo-EM structure of transcription termination factor Rho from Mycobacterium tuberculosis reveals bicyclomycin resistance mechanism.
Commun Biol, 5, 2022
6NBH
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Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
分子名称: CHOLESTEROL, Gs protein alpha subunit, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Zhao, L.-H, Ma, S, Sutkeviciute, I, Shen, D.-D, Zhou, X.E, de Waal, P.P, Li, C.-Y, Kang, Y, Clark, L.J, Jean-Alphonse, F.G, White, A.D, Xiao, K, Yang, D, Jiang, Y, Watanabe, T, Gardella, T.J, Melcher, K, Wang, M.-W, Vilardaga, J.-P, Xu, H.E, Zhang, Y.
登録日2018-12-07
公開日2019-04-17
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure and dynamics of the active human parathyroid hormone receptor-1.
Science, 364, 2019
8D7U
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BU of 8d7u by Molmil
Cereblon~DDB1 bound to CC-92480 with DDB1 in the linear conformation
分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ...
著者Watson, E.R, Lander, G.C.
登録日2022-06-07
公開日2022-07-20
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science, 378, 2022
6PRU
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BU of 6pru by Molmil
Photoconvertible crystals of PixJ from Thermosynechococcus elongatus
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Burgie, E.S, Clinger, J.A, Miller, M.D, Phillips Jr, G.N, Vierstra, R.D.
登録日2019-07-11
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.539 Å)
主引用文献Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.
Proc.Natl.Acad.Sci.USA, 117, 2020
8D81
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Cereblon~DDB1 bound to Pomalidomide
分子名称: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ...
著者Watson, E.R, Lander, G.C.
登録日2022-06-07
公開日2022-07-20
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science, 378, 2022
6NKP
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EphA2 LBD in complex with bA-WLA-YSKbio peptide
分子名称: BIOTIN, Ephrin type-A receptor 2, bA-WLA-YSKbio peptide
著者Lechtenberg, B.C, Pasquale, E.B.
登録日2019-01-07
公開日2019-05-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.033 Å)
主引用文献Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling.
J.Biol.Chem., 294, 2019
6NJH
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Crystal Structure of the PDE4D Catalytic Domain and UCR2 Regulatory Helix with T-48
分子名称: 2-(4-{[4-(3-chlorophenyl)-6-ethyl-1,3,5-triazin-2-yl]amino}phenyl)acetamide, MAGNESIUM ION, ZINC ION, ...
著者Fox III, D, Fairman, J.W, Gurney, M.E.
登録日2019-01-03
公開日2019-05-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Design and Synthesis of Selective Phosphodiesterase 4D (PDE4D) Allosteric Inhibitors for the Treatment of Fragile X Syndrome and Other Brain Disorders.
J.Med.Chem., 62, 2019
8D7W
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Cereblon~DDB1 bound to CC-92480 with DDB1 in the hinged conformation
分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ...
著者Watson, E.R, Lander, G.C.
登録日2022-06-07
公開日2022-07-20
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science, 378, 2022
8CVP
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Cereblon-DDB1 in the Apo form
分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION
著者Watson, E.R, Lander, G.C.
登録日2022-05-18
公開日2022-07-20
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science, 378, 2022
8D7V
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Cereblon~DDB1 bound to CC-92480 with DDB1 in the twisted conformation
分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ...
著者Watson, E.R, Lander, G.C.
登録日2022-06-07
公開日2022-07-20
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science, 378, 2022
8FJV
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Human GAR transformylase in complex with GAR substrate and AGF362 inhibitor
分子名称: GLYCINAMIDE RIBONUCLEOTIDE, N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-3-fluorothiophene-2-carbonyl}-L-glutamic acid, Trifunctional purine biosynthetic protein adenosine-3
著者Wong-Roushar, J, Dann III, C.E.
登録日2022-12-20
公開日2023-09-06
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Structure-Based Design of Transport-Specific Multitargeted One-Carbon Metabolism Inhibitors in Cytosol and Mitochondria.
J.Med.Chem., 66, 2023
8FJX
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Human GAR transformylase in complex with GAR substrate and AGF320 inhibitor
分子名称: GLYCINAMIDE RIBONUCLEOTIDE, N-{5-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]thiophene-2-carbonyl}-L-glutamic acid, Trifunctional purine biosynthetic protein adenosine-3
著者Wong-Roushar, J, Dann III, C.E.
登録日2022-12-20
公開日2023-09-06
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Structure-Based Design of Transport-Specific Multitargeted One-Carbon Metabolism Inhibitors in Cytosol and Mitochondria.
J.Med.Chem., 66, 2023
8FJY
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Human GAR transformylase in complex with GAR substrate and AGF291 inhibitor
分子名称: GLYCINAMIDE RIBONUCLEOTIDE, N-{4-[3-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]benzoyl}-L-glutamic acid, Trifunctional purine biosynthetic protein adenosine-3
著者Wong-Roushar, J, Dann III, C.E.
登録日2022-12-20
公開日2023-09-06
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Structure-Based Design of Transport-Specific Multitargeted One-Carbon Metabolism Inhibitors in Cytosol and Mitochondria.
J.Med.Chem., 66, 2023
6PXJ
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BU of 6pxj by Molmil
Crystal structure of human thrombin mutant I16T
分子名称: GLYCEROL, MAGNESIUM ION, Thrombin heavy chain, ...
著者Stojanovski, B, Chen, Z, Koester, S.K, Pelc, L.A, Di Cera, E.
登録日2019-07-26
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Role of the I16-D194 ionic interaction in the trypsin fold.
Sci Rep, 9, 2019
6PYD
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Structure of 3E9 antibody Fab bound to marinobufagenin
分子名称: (3beta,5beta,14alpha,15beta)-3,5-dihydroxy-14,15-epoxybufa-20,22-dienolide, 3E9 anti-marinobufagenin antibody Fab heavy chain, recloned with human IgG4 C region, ...
著者Franklin, M.C, Macdonald, L.E, McWhirter, J, Murphy, A.J.
登録日2019-07-29
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Kappa-on-Heavy (KoH) bodies are a distinct class of fully-human antibody-like therapeutic agents with antigen-binding properties.
Proc.Natl.Acad.Sci.USA, 117, 2020

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