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PDB: 41371 results

6EWK
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T. californica AChE in complex with a 3-hydroxy-2-pyridine aldoxime.
Descriptor: 2-[(~{E})-hydroxyiminomethyl]-6-(5-morpholin-4-ylpentyl)pyridin-3-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase, ...
Authors:de la Mora, E, Weik, M, Braiki, A, Mougeot, R, Jean, L, Renard, P.I.
Deposit date:2017-11-04
Release date:2018-11-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Potent 3-Hydroxy-2-Pyridine Aldoxime Reactivators of Organophosphate-Inhibited Cholinesterases with Predicted Blood-Brain Barrier Penetration.
Chemistry, 24, 2018
8JVG
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BU of 8jvg by Molmil
Crystal structure of dephospho-coenzyme A kinase
Descriptor: GTP-dependent dephospho-CoA kinase
Authors:Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
Deposit date:2023-06-28
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
6SQM
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BU of 6sqm by Molmil
Crystal structure of CREBBP bromodomain complexed with LA36
Descriptor: 1,2-ETHANEDIOL, CREB-binding protein, ~{N}-[3-acetamido-5-[(3-methylcinnolin-5-yl)carbamoyl]phenyl]furan-2-carboxamide
Authors:Bedi, R.K, Laul, E, Nevado, C, Caflisch, A.
Deposit date:2019-09-04
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of CREBBP bromodomain complexed with LA36
To Be Published
6H1F
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BU of 6h1f by Molmil
Structure of the nanobody-stabilized gelsolin D187N variant (second domain)
Descriptor: Gelsolin, THIOCYANATE ION, gelsolin nanobody, ...
Authors:Hassan, A, Milani, M, Mastrangelo, E, de Rosa, M.
Deposit date:2018-07-11
Release date:2019-01-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nanobody interaction unveils structure, dynamics and proteotoxicity of the Finnish-type amyloidogenic gelsolin variant.
Biochim Biophys Acta Mol Basis Dis, 1865, 2019
6F2Q
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BU of 6f2q by Molmil
Neutron crystal structure of perdeuterated galectin-3C in the ligand-free form
Descriptor: Galectin-3
Authors:Manzoni, F, Blakeley, M.P, Oksanen, E, Logan, D.T.
Deposit date:2017-11-27
Release date:2018-05-02
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (1.03 Å), X-RAY DIFFRACTION
Cite:Elucidation of Hydrogen Bonding Patterns in Ligand-Free, Lactose- and Glycerol-Bound Galectin-3C by Neutron Crystallography to Guide Drug Design.
J. Med. Chem., 61, 2018
3JZU
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BU of 3jzu by Molmil
Crystal structure of Dipeptide Epimerase from Enterococcus faecalis V583 complexed with Mg and dipeptide L-Leu-L-Tyr
Descriptor: Dipeptide Epimerase, LEUCINE, MAGNESIUM ION, ...
Authors:Fedorov, A.A, Fedorov, E.V, Imker, H.J, Sakai, A, Gerlt, J.A, Almo, S.C.
Deposit date:2009-09-24
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily.
Proc.Natl.Acad.Sci.USA, 109, 2012
7N5K
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BU of 7n5k by Molmil
PCNA from Thermococcus gammatolerans: crystal II, collection 1, 1.98 A, 3.84 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5J
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BU of 7n5j by Molmil
PCNA from Thermococcus gammatolerans: crystal I, collection 5, 2.82 A, 89.1 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
6GGO
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BU of 6ggo by Molmil
Crystal structure of Salmonella zinc metalloprotease effector GtgA
Descriptor: Bacteriophage virulence determinant, CHLORIDE ION, ZINC ION
Authors:Jennings, E, Esposito, D, Rittinger, K, Thurston, T.
Deposit date:2018-05-03
Release date:2018-08-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-function analyses of the bacterial zinc metalloprotease effector protein GtgA uncover key residues required for deactivating NF-kappa B.
J. Biol. Chem., 293, 2018
7N5M
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BU of 7n5m by Molmil
PCNA from Thermococcus gammatolerans: crystal III, collection 1, 2.00 A, 1.91 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5I
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BU of 7n5i by Molmil
PCNA from Thermococcus gammatolerans: crystal I, collection 1, 1.95 A, 5.22 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
1VKC
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BU of 1vkc by Molmil
Putative acetyl transferase from Pyrococcus furiosus
Descriptor: IODIDE ION, putative acetyl transferase
Authors:Habel, J.E, Liu, Z.-J, Tempel, W, Rose, J.P, Brereton, P.S, Izumi, M, Jenney Jr, F.E, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-05-11
Release date:2004-12-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Putative acetyl transferase from Pyrococcus furiosus
To be published
7N5N
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BU of 7n5n by Molmil
PCNA from Thermococcus gammatolerans: crystal III, collection 15, 2.20 A, 28.7 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
1AT1
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BU of 1at1 by Molmil
CRYSTAL STRUCTURES OF PHOSPHONOACETAMIDE LIGATED T AND PHOSPHONOACETAMIDE AND MALONATE LIGATED R STATES OF ASPARTATE CARBAMOYLTRANSFERASE AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL P*H
Descriptor: ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN, ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN, ...
Authors:Gouaux, J.E, Lipscomb, W.N.
Deposit date:1989-09-22
Release date:1990-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of phosphonoacetamide ligated T and phosphonoacetamide and malonate ligated R states of aspartate carbamoyltransferase at 2.8-A resolution and neutral pH.
Biochemistry, 29, 1990
2GU2
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BU of 2gu2 by Molmil
Crystal Structure of an Aspartoacylase from Rattus norvegicus
Descriptor: Aspa protein, SULFATE ION, ZINC ION
Authors:Bitto, E, Wesenberg, G.E, Phillips Jr, G.N, Bingman, C.A, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-04-28
Release date:2006-06-20
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.805 Å)
Cite:Structure of aspartoacylase, the brain enzyme impaired in Canavan disease.
Proc.Natl.Acad.Sci.Usa, 104, 2007
7N5L
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BU of 7n5l by Molmil
PCNA from Thermococcus gammatolerans: crystal II, collection 20, 3.07 A, 77.0 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
5JNV
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BU of 5jnv by Molmil
Crystal structure of bovine low molecular weight protein tyrosine phosphatase (LMPTP) mutant (W49Y N50E) complexed with HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DIMETHYL SULFOXIDE, Low molecular weight phosphotyrosine protein phosphatase
Authors:Stanford, S.M, Aleshin, A.E, Liddington, R.C, Bankston, L, Cadwell, G, Bottini, N.
Deposit date:2016-04-30
Release date:2017-03-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Diabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase.
Nat. Chem. Biol., 13, 2017
7TOO
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BU of 7too by Molmil
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Loveland, A.B, Svidritskiy, E, Susorov, D, Lee, S, Park, A, Zvornicanin, S, Demo, G, Gao, F.B, Korostelev, A.A.
Deposit date:2022-01-24
Release date:2022-05-25
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM.
Nat Commun, 13, 2022
3K77
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BU of 3k77 by Molmil
X-ray crystal structure of XRCC1
Descriptor: DNA repair protein XRCC1
Authors:Cuneo, M.J, London, R.E.
Deposit date:2009-10-12
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:Oxidation state of the XRCC1 N-terminal domain regulates DNA polymerase beta binding affinity.
Proc.Natl.Acad.Sci.USA, 107, 2010
6VH6
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BU of 6vh6 by Molmil
Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragment
Descriptor: 4-hydroxy-6-methyl-2H-1-benzopyran-2-one, Epstein-Barr nuclear antigen 1
Authors:Messick, T.E, Lieberman, P.M.
Deposit date:2020-01-09
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Biophysical Screens Identify Fragments That Bind to the Viral DNA-Binding Proteins EBNA1 and LANA.
Molecules, 25, 2020
6SWD
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BU of 6swd by Molmil
IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Coureux, P.-D, Mechulam, Y, Schmitt, E.
Deposit date:2019-09-20
Release date:2020-02-19
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
Commun Biol, 3, 2020
5NG1
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BU of 5ng1 by Molmil
TUBULIN-MTC-zampanolide complex
Descriptor: (2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-dimethyl-19-methylidene-7,13-dioxo-6,21-dioxabicyclo[15.3.1]henicosa-2,8,10-trien-5-yl](hydroxy)methyl]hexa-2,4-dienamide, (2~{Z},4~{E})-~{N}-[(~{S})-oxidanyl-[(1~{S},2~{E},5~{S},11~{R},17~{S},19~{R})-3,11,19-trimethyl-7,13-bis(oxidanylidene)-6,21-dioxabicyclo[15.3.1]henicos-2-en-5-yl]methyl]hexa-2,4-dienamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Field, J.J, Pera, B, Estevez Gallego, J, Calvo, E, Rodriguez-Salarichs, J, Saez-Calvo, G, Zuwerra, D, Jordi, M, Prota, A.E, Menchon, G, Miller, J.H, Altmann, K.-H, Diaz, J.F.
Deposit date:2017-03-16
Release date:2017-10-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Zampanolide Binding to Tubulin Indicates Cross-Talk of Taxane Site with Colchicine and Nucleotide Sites.
J. Nat. Prod., 81, 2018
6GOZ
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BU of 6goz by Molmil
Structure of mEos4b in the green long-lived dark state
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D.
Deposit date:2018-06-04
Release date:2019-11-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:Mechanistic Investigations of Green mEos4b Reveal a Dynamic Long-Lived Dark State.
J.Am.Chem.Soc., 2020
6SPD
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BU of 6spd by Molmil
Pseudomonas aeruginosa 50s ribosome from a clinical isolate
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A.
Deposit date:2019-09-01
Release date:2019-10-16
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate.
Proc.Natl.Acad.Sci.USA, 116, 2019
7TOP
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BU of 7top by Molmil
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Loveland, A.B, Svidritskiy, E, Susorov, D, Lee, S, Park, A, Zvornicanin, S, Demo, G, Gao, F.B, Korostelev, A.A.
Deposit date:2022-01-24
Release date:2022-05-25
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM.
Nat Commun, 13, 2022

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