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PDB: 41042 results

4DKQ
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Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with DMJ-I-228
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-[(1S,2S)-2-carbamimidamido-2,3-dihydro-1H-inden-1-yl]-N'-(4-chloro-3-fluorophenyl)ethanediamide, ...
Authors:Kwon, Y.D, LaLonde, J.M, Jones, D.M, Sun, A.W, Courter, J.R, Soeta, T, Kobayashi, T, Princiotto, A.M, Wu, X, Mascola, J, Schon, A, Freire, E, Sodroski, J, Madani, N, Smith III, A.B, Kwong, P.D.
Deposit date:2012-02-03
Release date:2012-05-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.888 Å)
Cite:Structure-Based Design, Synthesis, and Characterization of Dual Hotspot Small-Molecule HIV-1 Entry Inhibitors.
J.Med.Chem., 55, 2012
6OH1
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BU of 6oh1 by Molmil
IgA1 Protease G5 domain structure
Descriptor: Immunoglobulin A1 protease
Authors:Eisenmesser, E.Z, Chi, Y.C, Paukovich, N, Redzic, J.S, Rahkola, J.T, Janoff, E.N.
Deposit date:2019-04-04
Release date:2020-02-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Streptococcus pneumoniae G5 domains bind different ligands.
Protein Sci., 28, 2019
3C0U
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BU of 3c0u by Molmil
Crystal structure of E.coli yaeQ protein
Descriptor: CHLORIDE ION, SULFATE ION, Uncharacterized protein yaeQ
Authors:Chang, C, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-01-21
Release date:2008-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of E.coli yaeQ protein.
To be Published
6OS9
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BU of 6os9 by Molmil
human Neurotensin Receptor 1 (hNTSR1) - Gi1 Protein Complex in canonical conformation (C state)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Kato, H.E, Zhang, Y, Kobilka, B.K, Skiniotis, G.
Deposit date:2019-05-01
Release date:2019-07-10
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Conformational transitions of a neurotensin receptor 1-Gi1complex.
Nature, 572, 2019
4E36
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BU of 4e36 by Molmil
Crystal structure of the human Endoplasmic Reticulum Aminopeptidase 2 variant N392K
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Birtley, J.R, Saridakis, E, Pegias, P, Stratikos, E, Mavridis, I.M.
Deposit date:2012-03-09
Release date:2012-08-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:A common single nucleotide polymorphism in endoplasmic reticulum aminopeptidase 2 induces a specificity switch that leads to altered antigen processing.
J.Immunol., 189, 2012
4DTD
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BU of 4dtd by Molmil
Structure and functional characterization of a Vibrio cholerae toxin from the MARTX/VgrG family.
Descriptor: GLYCEROL, VgrG protein
Authors:Durand, E, Audoly, G, Derrez, E, Spinelli, S, Ortiz-Lombardia, M, Cascales, E, Raoult, D, Cambillau, C.
Deposit date:2012-02-21
Release date:2012-08-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and functional characterization of a Vibrio cholerae toxin from the MARTX/VgrG family.
J.Biol.Chem., 2012
5LNH
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BU of 5lnh by Molmil
Structure of full length Unliganded CodY from Bacillus subtilis
Descriptor: GTP-sensing transcriptional pleiotropic repressor CodY, SULFATE ION
Authors:Wilkinson, A.J, Levdikov, V.M, Blagova, E.V.
Deposit date:2016-08-04
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Branched-chain Amino Acid and GTP-sensing Global Regulator, CodY, from Bacillus subtilis.
J. Biol. Chem., 292, 2017
4X08
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BU of 4x08 by Molmil
Structure of H128N/ECP mutant in complex with sulphate anions at 1.34 Angstroms.
Descriptor: Eosinophil cationic protein, SULFATE ION
Authors:Blanco, J.A, Garcia, J.M, Salazar, V.A, Sanchez, D, Moussauoi, M, Boix, E.
Deposit date:2014-11-21
Release date:2015-10-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structure of H128N/ECP mutant in complex with sulphate anions at 1.34 Angstroms.
To Be Published
2QQC
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BU of 2qqc by Molmil
E109Q mutant of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, AGMATINE, Pyruvoyl-dependent arginine decarboxylase subunit alpha, ...
Authors:Ealick, S.E, Soriano, E.S.
Deposit date:2007-07-26
Release date:2008-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the N47A and E109Q mutant proteins of pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii.
Acta Crystallogr.,Sect.D, 64, 2008
4WVS
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BU of 4wvs by Molmil
Crystal structure of XIAP-BIR2 domain complexed with (S)-3-(4-methoxyphenyl)-2-((S)-2-((S)-1-((S)-2-((S)-2-(methylamino)propanamido)pent-4-ynoyl)pyrrolidine-2-carboxamido)-3-phenylpropanamido)propanoic acid
Descriptor: 3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-13-IUM, E3 ubiquitin-protein ligase XIAP, GLYCEROL, ...
Authors:Pokross, M.E.
Deposit date:2014-11-07
Release date:2015-05-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:The Discovery of Macrocyclic XIAP Antagonists from a DNA-Programmed Chemistry Library, and Their Optimization To Give Lead Compounds with in Vivo Antitumor Activity.
J.Med.Chem., 58, 2015
4WX6
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BU of 4wx6 by Molmil
Crystal structure of human adenovirus 8 protease with an irreversible vinyl sulfone inhibitor
Descriptor: N-[(2S)-2-(3,5-dichlorophenyl)-2-(ethylamino)acetyl]-3-methyl-L-valyl-N-[3-(methylsulfonyl)propyl]glycinamide, PVI, Protease
Authors:Grosche, P, Sirockin, F, Mac Sweeney, A, Ramage, P, Erbel, P, Melkko, S, Bernardi, A, Hughes, N, Ellis, D, Combrink, K, Jarousse, N, Altmann, E.
Deposit date:2014-11-13
Release date:2015-01-14
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure-based design and optimization of potent inhibitors of the adenoviral protease.
Bioorg.Med.Chem.Lett., 25, 2015
5EEA
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BU of 5eea by Molmil
Structure of HOXB13-DNA(CAA) complex
Descriptor: DNA (5'-D(P*GP*GP*AP*CP*CP*CP*AP*AP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*TP*TP*GP*GP*GP*TP*CP*C)-3'), Homeobox protein Hox-B13
Authors:Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J.
Deposit date:2015-10-22
Release date:2016-10-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima.
Elife, 7, 2018
4WYV
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BU of 4wyv by Molmil
Crystal Structure of Human Translin in Open Conformation
Descriptor: Translin
Authors:Dvir, H, Eliahoo, E, Alian, A.
Deposit date:2014-11-18
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:A novel open-barrel structure of octameric translin reveals a potential RNA entryway.
J.Mol.Biol., 427, 2015
7P46
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BU of 7p46 by Molmil
Crystal Structure of Xanthomonas campestris Tryptophan 2,3-dioxygenase (TDO)
Descriptor: (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, CYANIDE ION, GLYCEROL, ...
Authors:Kwon, H, Basran, J, Booth, E.S, Campbell, L.P, Thackray, S.J, Moody, P.C.E, Mowat, C.G, Raven, E.L.
Deposit date:2021-07-09
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding of l-kynurenine to X. campestris tryptophan 2,3-dioxygenase.
J.Inorg.Biochem., 225, 2021
4X2M
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BU of 4x2m by Molmil
Structure of Mtr2
Descriptor: Mtr2
Authors:Aibara, S, Valkov, E, Stewart, M.
Deposit date:2014-11-26
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of the principal mRNA-export factor Mex67-Mtr2 from Chaetomium thermophilum.
Acta Crystallogr.,Sect.F, 71, 2015
5WG8
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BU of 5wg8 by Molmil
Structure of PP5C with LB-100; 7-oxabicyclo[2.2.1]heptane-2,3-dicarbonyl moiety modeled in the density
Descriptor: (1S,2R,3S,4R)-3-(4-methylpiperazine-1-carbonyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid, (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:D'Arcy, B.M, Swingle, M.R, Honkanen, R.E, Prakash, A.
Deposit date:2017-07-13
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The Antitumor Drug LB-100 Is a Catalytic Inhibitor of Protein Phosphatase 2A (PPP2CA) and 5 (PPP5C) Coordinating with the Active-Site Catalytic Metals in PPP5C.
Mol. Cancer Ther., 18, 2019
5WGX
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BU of 5wgx by Molmil
Crystal Structure of MalA' H253A, malbrancheamide B complex
Descriptor: (5aS,12aS,13aS)-9-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one, CADMIUM ION, CHLORIDE ION, ...
Authors:Fraley, A.E, Smith, J.L.
Deposit date:2017-07-14
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.973 Å)
Cite:Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids.
J. Am. Chem. Soc., 139, 2017
3T3R
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BU of 3t3r by Molmil
Human Cytochrome P450 2A6 in complex with Pilocarpine
Descriptor: (3S,4R)-3-ethyl-4-[(1-methyl-1H-imidazol-5-yl)methyl]dihydrofuran-2(3H)-one, Cytochrome P450 2A6, PROTOPORPHYRIN IX CONTAINING FE
Authors:DeVore, N.M, Scott, E.E.
Deposit date:2011-07-25
Release date:2011-12-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural comparison of cytochromes P450 2A6, 2A13, and 2E1 with pilocarpine.
Febs J., 279, 2012
1W6V
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BU of 1w6v by Molmil
Solution structure of the DUSP domain of hUSP15
Descriptor: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15
Authors:De Jong, R.D, Ab, E, Diercks, T, Truffault, V, Daniels, M, Kaptein, R, Folkers, G.E.
Deposit date:2004-08-24
Release date:2006-01-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure of the Human Ubiquitin-Specific Protease 15 Dusp Domain.
J.Biol.Chem., 281, 2006
5WGZ
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BU of 5wgz by Molmil
Crystal Structure of Wild-type MalA', isomalbrancheamide B complex
Descriptor: (5aS,12aS,13aS)-8-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one, CADMIUM ION, CHLORIDE ION, ...
Authors:Fraley, A.E, Smith, J.L.
Deposit date:2017-07-14
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.041 Å)
Cite:Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids.
J. Am. Chem. Soc., 139, 2017
1W2W
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Crystal structure of yeast Ypr118w, a methylthioribose-1-phosphate isomerase related to regulatory eIF2B subunits
Descriptor: 5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE, SULFATE ION
Authors:Bumann, M, Djafarzadeh, S, Oberholzer, A.E, Bigler, P, Altmann, M, Trachsel, H, Baumann, U.
Deposit date:2004-07-09
Release date:2004-07-16
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Yeast Ypr118W, a Methylthioribose-1-Phosphate Isomerase Related to Regulatory Eif2B Subunits
J.Biol.Chem., 279, 2004
5LN3
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BU of 5ln3 by Molmil
The human 26S Proteasome at 6.8 Ang.
Descriptor: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, ...
Authors:Schweitzer, A, Beck, F, Sakata, E, Unverdorben, P.
Deposit date:2016-08-03
Release date:2017-03-22
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.
Mol. Cell Proteomics, 16, 2017
1W5R
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BU of 1w5r by Molmil
X-ray crystallographic structure of a C70Q Mycobacterium smegmatis N- arylamine Acetyltransferase
Descriptor: ARYLAMINE N-ACETYLTRANSFERASE
Authors:Holton, S.J, Sandy, J, Rodrigues-Lima, F, Dupret, J.-M, Bhakta, S, Noble, M.E.M, Sim, E.
Deposit date:2004-08-09
Release date:2005-05-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Investigation of the Catalytic Triad of Arylamine N-Acetyltransferases: Essential Residues Required for Acetyl Transfer to Arylamines.
Biochem.J., 390, 2005
3T3Q
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BU of 3t3q by Molmil
Human Cytochrome P450 2A6 I208S/I300F/G301A/S369G in complex with Pilocarpine
Descriptor: (3S,4R)-3-ethyl-4-[(1-methyl-1H-imidazol-5-yl)methyl]dihydrofuran-2(3H)-one, Cytochrome P450 2A6, PROTOPORPHYRIN IX CONTAINING FE
Authors:DeVore, N.M, Scott, E.E.
Deposit date:2011-07-25
Release date:2011-12-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural comparison of cytochromes P450 2A6, 2A13, and 2E1 with pilocarpine.
Febs J., 279, 2012
2FQZ
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BU of 2fqz by Molmil
Metal-depleted Ecl18kI in complex with uncleaved DNA
Descriptor: DNA STRAND 1, DNA STRAND 2, R.Ecl18kI
Authors:Bochtler, M, Szczepanowski, R.H, Tamulaitis, G, Grazulis, S, Czapinska, H, Manakova, E, Siksnys, V.
Deposit date:2006-01-18
Release date:2006-06-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease
Embo J., 25, 2006

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