Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 155 件

5W1H
DownloadVisualize
BU of 5w1h by Molmil
Crystal structure of LbaCas13a (C2c2) bound to mature crRNA (24-nt spacer)
分子名称: GLYCEROL, IODIDE ION, LbaCas13a (C2c2), ...
著者Knott, G.J, Doudna, J.A.
登録日2017-06-03
公開日2017-09-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme.
Nat. Struct. Mol. Biol., 24, 2017
5VVJ
DownloadVisualize
BU of 5vvj by Molmil
Cas1-Cas2 bound to half-site intermediate
分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (112-MER), ...
著者Wright, A.V, Knott, G.J, Doxzen, K.W, Doudna, J.A.
登録日2017-05-19
公開日2017-08-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.89 Å)
主引用文献Structures of the CRISPR genome integration complex.
Science, 357, 2017
5DS6
DownloadVisualize
BU of 5ds6 by Molmil
Crystal structure the Escherichia coli Cas1-Cas2 complex bound to protospacer DNA with splayed ends
分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
著者Nunez, J.K, Harrington, L.B, Kranzusch, P.J, Engelman, A.N, Doudna, J.A.
登録日2015-09-16
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.352 Å)
主引用文献Foreign DNA capture during CRISPR-Cas adaptive immunity.
Nature, 527, 2015
5W1I
DownloadVisualize
BU of 5w1i by Molmil
Crystal structure of LbaCas13a (C2c2) bound to mature crRNA (20-nt spacer)
分子名称: IODIDE ION, LbaCas13a (C2c2), mature crRNA
著者Knott, G.J, Doudna, J.A.
登録日2017-06-03
公開日2017-09-13
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme.
Nat. Struct. Mol. Biol., 24, 2017
2AAO
DownloadVisualize
BU of 2aao by Molmil
Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
分子名称: CALCIUM ION, Calcium-dependent protein kinase, isoform AK1
著者Chandran, V, Stollar, E.J, Lindorff-Larsen, K, Harper, J.F, Chazin, W.J, Dobson, C.M, Luisi, B.F, Christodoulou, J.
登録日2005-07-13
公開日2005-12-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the regulatory apparatus of a calcium-dependent protein kinase (CDPK): a novel mode of calmodulin-target recognition.
J.Mol.Biol., 357, 2006
2Y9H
DownloadVisualize
BU of 2y9h by Molmil
Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA
分子名称: 5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3', CSE3
著者Sashital, D.G, Jinek, M, Doudna, J.A.
登録日2011-02-14
公開日2011-05-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3.
Nat.Struct.Mol.Biol., 18, 2011
2K0E
DownloadVisualize
BU of 2k0e by Molmil
A Coupled Equilibrium Shift Mechanism in Calmodulin-Mediated Signal Transduction
分子名称: CALCIUM ION, Calmodulin
著者Gsponer, J, Christodoulou, J, Cavalli, A, Bui, J.M, Richter, B, Dobson, C.M, Vendruscolo, M.
登録日2008-02-02
公開日2008-06-10
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
2K0F
DownloadVisualize
BU of 2k0f by Molmil
Calmodulin complexed with calmodulin-binding peptide from smooth muscle myosin light chain kinase
分子名称: 19-mer peptide from Myosin light chain kinase, CALCIUM ION, calmodulin
著者Gsponer, J, Christodoulou, J, Cavalli, A, Bui, J.M, Richter, B, Dobson, C.M, Vendruscolo, M.
登録日2008-02-02
公開日2008-06-10
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
6C8U
DownloadVisualize
BU of 6c8u by Molmil
Solution structure of Musashi2 RRM1
分子名称: RNA-binding protein Musashi homolog 2
著者Xing, M, Lan, L, Douglas, J.T, Gao, P, Hanzlik, R.P, Xu, L.
登録日2018-01-25
公開日2019-01-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Crystal and solution structures of human oncoprotein Musashi-2 N-terminal RNA recognition motif 1.
Proteins, 2019
5E7J
DownloadVisualize
BU of 5e7j by Molmil
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3 bound to AMP
分子名称: ADENOSINE MONOPHOSPHATE, ATP-dependent RNA helicase DDX3X
著者Floor, S.N, Condon, K.J, Doudna, J.A.
登録日2015-10-12
公開日2015-12-02
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3.
J.Biol.Chem., 291, 2016
5E7I
DownloadVisualize
BU of 5e7i by Molmil
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3
分子名称: ATP-dependent RNA helicase DDX3X
著者Floor, S.N, Condon, K.J, Doudna, J.A.
登録日2015-10-12
公開日2015-12-02
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.223 Å)
主引用文献Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3.
J.Biol.Chem., 291, 2016
4HOH
DownloadVisualize
BU of 4hoh by Molmil
RIBONUCLEASE T1 (THR93ALA MUTANT) COMPLEXED WITH 2'GMP
分子名称: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PROTEIN (RIBONUCLEASE T1)
著者Langhorst, U, Loris, R, Denisov, V.P, Doumen, J, Roose, P, Maes, D, Halle, B, Steyaert, J.
登録日1998-09-14
公開日1998-09-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Dissection of the structural and functional role of a conserved hydration site in RNase T1.
Protein Sci., 8, 1999
1GID
DownloadVisualize
BU of 1gid by Molmil
CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING
分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, P4-P6 RNA RIBOZYME DOMAIN
著者Cate, J.H, Gooding, A.R, Podell, E, Zhou, K, Golden, B.L, Kundrot, C.E, Cech, T.R, Doudna, J.A.
登録日1996-08-22
公開日1996-12-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of a group I ribozyme domain: principles of RNA packing.
Science, 273, 1996
5E7M
DownloadVisualize
BU of 5e7m by Molmil
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3 bound to AMPPNP
分子名称: ATP-dependent RNA helicase DDX3X, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Floor, S.N, Condon, K.J, Doudna, J.A.
登録日2015-10-12
公開日2015-12-02
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.304 Å)
主引用文献Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3.
J.Biol.Chem., 291, 2016
2HOH
DownloadVisualize
BU of 2hoh by Molmil
RIBONUCLEASE T1 (N9A MUTANT) COMPLEXED WITH 2'GMP
分子名称: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PHOSPHATE ION, ...
著者Langhorst, U, Loris, R, Denisov, V.P, Doumen, J, Roose, P, Maes, D, Halle, B, Steyaert, J.
登録日1998-09-14
公開日1998-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Dissection of the structural and functional role of a conserved hydration site in RNase T1.
Protein Sci., 8, 1999
7M5O
DownloadVisualize
BU of 7m5o by Molmil
Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA
分子名称: CasPhi, ZINC ION, crRNA
著者Pausch, P, Soczek, K, Nogales, E, Doudna, J.
登録日2021-03-24
公開日2021-08-04
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献DNA interference states of the hypercompact CRISPR-Cas Phi effector.
Nat.Struct.Mol.Biol., 28, 2021
1HQ1
DownloadVisualize
BU of 1hq1 by Molmil
STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE
分子名称: 4.5S RNA DOMAIN IV, MAGNESIUM ION, POTASSIUM ION, ...
著者Batey, R.T, Sagar, M.B, Doudna, J.A.
登録日2000-12-13
公開日2001-01-03
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle.
J.Mol.Biol., 307, 2001
4KM5
DownloadVisualize
BU of 4km5 by Molmil
X-ray crystal structure of human cyclic GMP-AMP synthase (cGAS)
分子名称: Cyclic GMP-AMP synthase, ZINC ION
著者Kranzusch, P.J, Lee, A.S.Y, Berger, J.M, Doudna, J.A.
登録日2013-05-08
公開日2013-05-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献Structure of Human cGAS Reveals a Conserved Family of Second-Messenger Enzymes in Innate Immunity.
Cell Rep, 3, 2013
4PR6
DownloadVisualize
BU of 4pr6 by Molmil
A Second Look at the HDV Ribozyme Structure and Dynamics.
分子名称: HDV RIBOZYME SELF-CLEAVED, MAGNESIUM ION, U1 small nuclear ribonucleoprotein A
著者Kapral, G.J, Jain, S, Noeske, J, Doudna, J.A, Richardson, D.C, Richardson, J.S.
登録日2014-03-05
公開日2014-10-29
最終更新日2014-11-26
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
Nucleic Acids Res., 42, 2014
3HOH
DownloadVisualize
BU of 3hoh by Molmil
RIBONUCLEASE T1 (THR93GLN MUTANT) COMPLEXED WITH 2'GMP
分子名称: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PROTEIN (RIBONUCLEASE T1)
著者Langhorst, U, Loris, R, Denisov, V.P, Doumen, J, Roose, P, Maes, D, Halle, B, Steyaert, J.
登録日1998-09-11
公開日1998-09-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Dissection of the structural and functional role of a conserved hydration site in RNase T1.
Protein Sci., 8, 1999
4I0C
DownloadVisualize
BU of 4i0c by Molmil
The structure of the camelid antibody cAbHuL5 in complex with human lysozyme
分子名称: CHLORIDE ION, GLYCEROL, Lysozyme C, ...
著者De Genst, E, Chan, P.H, Pardon, E, Kumita, J.R, Christodoulou, J, Menzer, L, Chirgadze, D.Y, Robinson, C.V, Muyldermans, S, Matagne, A, Wyns, L, Dobson, C.M, Dumoulin, M.
登録日2012-11-16
公開日2013-10-09
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A nanobody binding to non-amyloidogenic regions of the protein human lysozyme enhances partial unfolding but inhibits amyloid fibril formation.
J.Phys.Chem.B, 117, 2013
4P6I
DownloadVisualize
BU of 4p6i by Molmil
Crystal structure of the Cas1-Cas2 complex from Escherichia coli
分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2
著者Nunez, J.K, Kranzusch, P.J, Noeske, J, Doudna, J.A.
登録日2014-03-24
公開日2014-05-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity.
Nat.Struct.Mol.Biol., 21, 2014
1L8V
DownloadVisualize
BU of 1l8v by Molmil
Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia
分子名称: MAGNESIUM ION, P4-P6 RNA ribozyme domain
著者Battle, D.J, Doudna, J.A.
登録日2002-03-21
公開日2002-08-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Specificity of RNA-RNA Helix Recognition
Proc.Natl.Acad.Sci.USA, 99, 2002
4PRF
DownloadVisualize
BU of 4prf by Molmil
A Second Look at the HDV Ribozyme Structure and Dynamics.
分子名称: Hepatitis Delta virus ribozyme, STRONTIUM ION, U1 small nuclear ribonucleoprotein A
著者Kapral, G.J, Jain, S, Noeske, J, Doudna, J.A, Richardson, D.C, Richardson, J.S.
登録日2014-03-05
公開日2014-10-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.395 Å)
主引用文献New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
Nucleic Acids Res., 42, 2014
2MEZ
DownloadVisualize
BU of 2mez by Molmil
Flexible anchoring of archaeal MBF1 on ribosomes suggests role as recruitment factor
分子名称: Multiprotein Bridging Factor (MBP-like)
著者Launay, H, Blombarch, F, Camilloni, C, Vendruscolo, M, van des Oost, J, Christodoulou, J.
登録日2013-10-03
公開日2014-06-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain.
Biochem.J., 462, 2014

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon