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PDB: 163 results

7XVH
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Crystal structure of AtHPPD-Y13287 complex
Descriptor: 1,5-dimethyl-3-(2-methylphenyl)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-05-23
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
8GWD
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Crystal structure of AtHPPD-Y18734 complex
Descriptor: 1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-[(1S)-1-phenylethyl]quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, G.-F, Lin, H.-Y, Dong, J.
Deposit date:2022-09-16
Release date:2023-09-20
Method:X-RAY DIFFRACTION (1.889 Å)
Cite:Crystal structure of AtHPPD-Y18734 complex
To Be Published
7X7L
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Crystal structure of ZmHPPD-Y13161 complex
Descriptor: 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-09
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.887 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X5W
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Crystal structure of AtHPPD-Y18022 complex
Descriptor: 1,5-dimethyl-3-naphthalen-1-yl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X5Y
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Crystal structure of AtHPPD-Y14240 complex
Descriptor: (1R,3S)-5-methyl-2-[(1S)-2-naphthalen-1-yloxy-1-oxidanyl-ethyl]cyclohexane-1,3-diol, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-hydroxyphenylpyruvate dioxygenase, ...
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X69
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Crystal structure of AtHPPD-Y191053 complex
Descriptor: 1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(4-phenylbutyl)quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-06
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X5Z
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Crystal structure of AtHPPD-Y13162 complex
Descriptor: 1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-phenyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.688 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X5S
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Crystal structure of AtHPPD-Y14157 complex
Descriptor: 2-methyl-4-(2-nitro-4-piperidin-1-yl-phenyl)carbonyl-5-phenyl-1H-pyrazol-3-one, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X5X
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Crystal structure of AtHPPD-YH20533 complex
Descriptor: 2-methylsulfonyl-N-(1-methyl-1,2,3,4-tetrazol-5-yl)-4-(trifluoromethyl)benzamide, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.196 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X67
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Crystal structure of AtHPPD-Y18406 complex
Descriptor: 1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(3-phenylpropyl)quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-06
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X62
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Crystal structure of AtHPPD-Y191051 complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-phenyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, ...
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-06
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X6M
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Crystal structure of AtHPPD-Y191058 complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-hydroxyphenylpyruvate dioxygenase, 5-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-phenyl-2-(trifluoromethyl)quinazolin-4-one, ...
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-07
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.815 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X5U
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Crystal structure of AtHPPD-diketonitrile complex
Descriptor: (1R,2S,3R)-1-cyclopropyl-2-(iminomethyl)-3-[2-methylsulfonyl-4-(trifluoromethyl)phenyl]propane-1,3-diol, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-hydroxyphenylpyruvate dioxygenase, ...
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X64
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Crystal structure of AtHPPD-Y18027 complex
Descriptor: 1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-06
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.288 Å)
Cite:Discovery of Subnanomolar Inhibitors of 4-Hydroxyphenylpyruvate Dioxygenase via Structure-Based Rational Design.
J.Agric.Food Chem., 71, 2023
7X6N
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BU of 7x6n by Molmil
Crystal structure of AtHPPD-Y191710 complex
Descriptor: 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION, ethyl 5-methyl-4-oxidanylidene-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-phenyl-quinazoline-2-carboxylate
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-07
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.691 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
7X5R
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BU of 7x5r by Molmil
Crystal structure of AtHPPD-Lancotrione complex
Descriptor: (1R,3R)-2-[(S)-[2-chloranyl-3-[2-(1,3-dioxolan-2-yl)ethoxy]-4-methylsulfonyl-phenyl]-oxidanyl-methyl]cyclohexane-1,3-diol, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-hydroxyphenylpyruvate dioxygenase, ...
Authors:Lin, H.-Y, Dong, J, Yang, G.-F.
Deposit date:2022-03-05
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.644 Å)
Cite:Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules
Adv Agrochem, 2022
3T4F
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BU of 3t4f by Molmil
Crystal Structure of a KGE Collagen Mimetic Peptide at 1.68 A
Descriptor: collagen mimetic peptide
Authors:Fallas, J.A, Dong, J, Miller, M.D, Tao, Y.J, Hartgerink, J.D.
Deposit date:2011-07-25
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural insights into charge pair interactions in triple helical collagen-like proteins.
J.Biol.Chem., 287, 2012
3K3Q
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BU of 3k3q by Molmil
Crystal Structure of a Llama Antibody complexed with the C. Botulinum Neurotoxin Serotype A Catalytic Domain
Descriptor: Botulinum neurotoxin type A, ZINC ION, llama Aa1 VHH domain
Authors:Thompson, A.A, Dong, J, Marks, J.D, Stevens, R.C.
Deposit date:2009-10-04
Release date:2010-02-23
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Single-Domain Llama Antibody Potently Inhibits the Enzymatic Activity of Botulinum Neurotoxin by Binding to the Non-Catalytic alpha-Exosite Binding Region.
J.Mol.Biol., 397, 2010
5IMX
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BU of 5imx by Molmil
Anaplastic lymphoma kinase (ALK) catalytic domain complexed with novel inhibitor 3-sulfonylpyrazol-4-amino pyrimidine
Descriptor: 5-chloro-N~2~-{5-methyl-4-(1-methylpiperidin-4-yl)-2-[(propan-2-yl)oxy]phenyl}-N~4~-{1-methyl-3-[(propan-2-yl)sulfonyl]-1H-pyrazol-4-yl}pyrimidine-2,4-diamine, ALK tyrosine kinase receptor
Authors:Wang, C, Zhang, P, Dong, J.
Deposit date:2016-03-07
Release date:2016-05-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Design and synthesis of novel 3-sulfonylpyrazol-4-amino pyrimidines as potent anaplastic lymphoma kinase (ALK) inhibitors.
Bioorg.Med.Chem.Lett., 26, 2016
3U29
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BU of 3u29 by Molmil
Crystal Structure of a KGD Collagen Mimetic Peptide at 2.0 A
Descriptor: collagen mimetic peptide
Authors:Fallas, J.A, Dong, J, Miller, M.D, Tao, Y.J, Hartgerink, J.D.
Deposit date:2011-10-02
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into charge pair interactions in triple helical collagen-like proteins.
J.Biol.Chem., 287, 2012
3K8A
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BU of 3k8a by Molmil
Neisseria gonorrhoeae PriB
Descriptor: Putative primosomal replication protein
Authors:Lopper, M.E, Dong, J, George, N.P, Duckett, K.L, DeBeer, M.A.
Deposit date:2009-10-14
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The crystal structure of Neisseria gonorrhoeae PriB reveals mechanistic differences among bacterial DNA replication restart pathways
Nucleic Acids Res., 38, 2010
4M1K
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BU of 4m1k by Molmil
Crystal structure of elongation factor G (EFG)
Descriptor: Elongation factor G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Liu, G, Dong, J, Gong, W, Qin, Y.
Deposit date:2013-08-02
Release date:2014-08-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.952 Å)
Cite:Crystal structure of elongation factor G (EFG)
To be published
7VO8
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BU of 7vo8 by Molmil
Structure of AtHPPD complexed with LSY-1
Descriptor: 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION, N-[6-[[9-(dimethylamino)-12H-benzo[a]phenoxazin-5-yl]amino]hexyl]-4-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-[oxidanyl(oxidanylidene)-$l^4-azanyl]benzamide
Authors:Yang, G.-F, Dong, J.
Deposit date:2021-10-12
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:In vivo diagnostics of abiotic plant stress responses via in situ real-time fluorescence imaging
Plant Physiol., 190, 2022
7W1Y
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Human MCM double hexamer bound to natural DNA duplex (polyAT/polyTA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (49-MER), ...
Authors:Li, J, Dong, J, Dang, S, Zhai, Y.
Deposit date:2021-11-21
Release date:2023-02-08
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:The human pre-replication complex is an open complex.
Cell, 186, 2023
7WJ8
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Complex structure of AtHPPD-PyQ1
Descriptor: 2-pyren-1-yloxyethyl 2-[1,5-dimethyl-2,4-bis(oxidanylidene)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazolin-3-yl]ethanoate, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, G.-F, Lin, H.-Y, Dong, J.
Deposit date:2022-01-05
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.805 Å)
Cite:Design of an HPPD fluorescent probe and visualization of plant responses to abiotic stress
Adv Agrochem, 2022

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