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PDB: 346 results

1HQE
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BU of 1hqe by Molmil
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Descriptor: POL POLYPROTEIN
Authors:Ding, J, Hsiou, Y, Arnold, E.
Deposit date:2000-12-15
Release date:2001-05-30
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Lys103Asn mutation of HIV-1 RT: a novel mechanism of drug resistance.
J.Mol.Biol., 309, 2001
1HPZ
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BU of 1hpz by Molmil
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Descriptor: ALPHA-(2,6-DICHLOROPHENYL)-ALPHA-(2-ACETYL-5-METHYLANILINO)ACETAMIDE, POL POLYPROTEIN
Authors:Ding, J, Hsiou, Y, Arnold, E.
Deposit date:2000-12-13
Release date:2001-05-30
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Lys103Asn mutation of HIV-1 RT: a novel mechanism of drug resistance.
J.Mol.Biol., 309, 2001
3WLC
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BU of 3wlc by Molmil
Crystal structure of dimeric GCaMP6m
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Ding, J, Luo, A.F, Hu, L.Y, Wang, D.C, Shao, F.
Deposit date:2013-11-08
Release date:2014-01-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis of the ultrasensitive calcium indicator GCaMP6.
Sci China Life Sci, 57, 2014
6ACI
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BU of 6aci by Molmil
Crystal structure of EPEC effector NleB in complex with FADD death domain
Descriptor: FAS-associated death domain protein, MANGANESE (II) ION, T3SS secreted effector NleB homolog, ...
Authors:Ding, J, Shao, F.
Deposit date:2018-07-26
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and Functional Insights into Host Death Domains Inactivation by the Bacterial Arginine GlcNAcyltransferase Effector.
Mol.Cell, 74, 2019
6AC0
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BU of 6ac0 by Molmil
Crystal structure of TRADD death domain GlcNAcylated by EPEC effector NleB
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor receptor type 1-associated DEATH domain protein
Authors:Ding, J, Shao, F.
Deposit date:2018-07-24
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:Structural and Functional Insights into Host Death Domains Inactivation by the Bacterial Arginine GlcNAcyltransferase Effector.
Mol.Cell, 74, 2019
1AVP
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BU of 1avp by Molmil
STRUCTURE OF HUMAN ADENOVIRUS 2 PROTEINASE WITH ITS 11 AMINO ACID COFACTOR
Descriptor: ADENOVIRAL PROTEINASE
Authors:Ding, J, Mcgrath, W.J, Sweet, R.M, Mangel, W.F.
Deposit date:1996-04-04
Release date:1997-11-19
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the human adenovirus proteinase with its 11 amino acid cofactor.
EMBO J., 15, 1996
6AC5
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BU of 6ac5 by Molmil
Crystal structure of RIPK1 death domain GlcNAcylated by EPEC effector NleB
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-interacting serine/threonine-protein kinase 1, SULFATE ION
Authors:Ding, J, Shao, F.
Deposit date:2018-07-25
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:Structural and Functional Insights into Host Death Domains Inactivation by the Bacterial Arginine GlcNAcyltransferase Effector.
Mol.Cell, 74, 2019
1HJA
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BU of 1hja by Molmil
LYS 18 VARIANT OF TURKEY OVOMUCOID INHIBITOR THIRD DOMAIN COMPLEXED WITH ALPHA-CHYMOTRYPSIN
Descriptor: ALPHA-CHYMOTRYPSIN, OVOMUCOID INHIBITOR
Authors:Ding, J.-H, James, M.N.G.
Deposit date:1997-07-09
Release date:1998-01-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Lys18 Variant of Turkey Ovomucoid Inhibitor Third Domain Complexed with Alpha-Chymotrypsin at 2.3 A
To be Published
5Z2C
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BU of 5z2c by Molmil
Crystal structure of ALPK-1 N-terminal domain in complex with ADP-heptose
Descriptor: Alpha-protein kinase 1, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4S,5S,6R)-6-[(1S)-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate
Authors:Ding, J, She, Y, Shao, F.
Deposit date:2018-01-02
Release date:2018-08-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:Alpha-kinase 1 is a cytosolic innate immune receptor for bacterial ADP-heptose.
Nature, 561, 2018
3VPI
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BU of 3vpi by Molmil
Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa
Descriptor: FORMIC ACID, type VI secretion exported 1
Authors:Ding, J, Wang, W, Wang, D.C.
Deposit date:2012-03-04
Release date:2012-06-27
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the Pseudomonas aeruginosa type VI virulence effector Tse1 bacteriolysis and self-protection mechanisms
J.Biol.Chem., 287, 2012
5B5R
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BU of 5b5r by Molmil
Crystal structure of GSDMA3
Descriptor: Gasdermin-A3
Authors:Ding, J, Shao, F.
Deposit date:2016-05-14
Release date:2016-06-15
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Pore-forming activity and structural autoinhibition of the gasdermin family.
Nature, 535, 2016
3VPJ
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BU of 3vpj by Molmil
crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa in complex with immune protein Tsi1
Descriptor: Tse1-specific immunity protein, type VI secretion exported 1
Authors:Ding, J, Wang, W, Wang, D.C.
Deposit date:2012-03-04
Release date:2012-06-27
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the Pseudomonas aeruginosa type VI virulence effector Tse1 bacteriolysis and self-protection mechanisms
J.Biol.Chem., 287, 2012
4YKC
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BU of 4ykc by Molmil
Crystal structure of cerebral cavernous malformation 2 C-terminal adaptor domain
Descriptor: Malcavernin
Authors:Ding, J, Wang, X, Wang, D.C.
Deposit date:2015-03-04
Release date:2015-06-03
Last modified:2015-06-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Insights into the Molecular Recognition between Cerebral Cavernous Malformation 2 and Mitogen-Activated Protein Kinase Kinase Kinase 3
Structure, 23, 2015
4YKD
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BU of 4ykd by Molmil
Crystal structure of truncated cerebral cavernous malformation 2 C-terminal adaptor domain
Descriptor: Malcavernin
Authors:Ding, J, Wang, X, Wang, D.C.
Deposit date:2015-03-04
Release date:2015-06-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.932 Å)
Cite:Structural Insights into the Molecular Recognition between Cerebral Cavernous Malformation 2 and Mitogen-Activated Protein Kinase Kinase Kinase 3
Structure, 23, 2015
4YL6
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BU of 4yl6 by Molmil
Crystal structure of truncated cerebral cavernous malformation 2 C-terminal adaptor domain in complex with an internal helix of mitogen-activated protein kinase kinase kinase 3
Descriptor: Malcavernin, Mitogen-activated protein kinase kinase kinase 3
Authors:Ding, J, Wang, X, Wang, D.C.
Deposit date:2015-03-05
Release date:2015-06-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Insights into the Molecular Recognition between Cerebral Cavernous Malformation 2 and Mitogen-Activated Protein Kinase Kinase Kinase 3
Structure, 23, 2015
6KMV
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BU of 6kmv by Molmil
caspase-11 C254A P22/P10 in complex with mouse GSDMD-C domain
Descriptor: Caspase-4, Gasdermin-D
Authors:Ding, J, Sun, Q.
Deposit date:2019-08-01
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell, 180, 2020
6KMZ
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BU of 6kmz by Molmil
caspase-4 P22/P10 C258A in complex with human GSDMD-C domain
Descriptor: Caspase-4, Gasdermin-D
Authors:Ding, J, Sun, Q.
Deposit date:2019-08-01
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.61 Å)
Cite:Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell, 180, 2020
6KMU
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BU of 6kmu by Molmil
P22/P10 complex of caspase-11 mutant C254A
Descriptor: Caspase-4
Authors:Ding, J, Sun, Q.
Deposit date:2019-08-01
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell, 180, 2020
3AJM
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BU of 3ajm by Molmil
Crystal structure of programmed cell death 10 in complex with inositol 1,3,4,5-tetrakisphosphate
Descriptor: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, Programmed cell death protein 10
Authors:Ding, J, Wang, D.C.
Deposit date:2010-06-09
Release date:2010-06-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human programmed cell death 10 complexed with inositol-(1,3,4,5)-tetrakisphosphate: a novel adaptor protein involved in human cerebral cavernous malformation.
Biochem.Biophys.Res.Commun., 399, 2010
6KN1
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BU of 6kn1 by Molmil
P20/P12 of caspase-11 mutant C254A
Descriptor: Caspase-4
Authors:Ding, J, Sun, Q.
Deposit date:2019-08-02
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell, 180, 2020
6KN0
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BU of 6kn0 by Molmil
caspase-1 P20/P10 C285A in complex with human GSDMD-C domain
Descriptor: Caspase-1, Gasdermin-D
Authors:Ding, J, Sun, Q.
Deposit date:2019-08-02
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.793 Å)
Cite:Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell, 180, 2020
6KMT
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BU of 6kmt by Molmil
P32 of caspase-11 mutant C254A
Descriptor: Caspase-4
Authors:Ding, J, Sun, Q.
Deposit date:2019-08-01
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell, 180, 2020
7WZS
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BU of 7wzs by Molmil
Crystal structure of Chromobacterium violaceum effector CopC in complex with host calmodulin and caspase-7
Descriptor: Calmodulin-1, Caspase-7, CopC
Authors:Ding, J.
Deposit date:2022-02-19
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Calmodulin Binding Activates Chromobacterium CopC Effector to ADP-Riboxanate Host Apoptotic Caspases.
Mbio, 13, 2022
7DN8
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BU of 7dn8 by Molmil
Crystal structure of Salmonella effector SopF in complex with ARF1
Descriptor: ADP-ribosylation factor 1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ding, J, Shao, F.
Deposit date:2020-12-09
Release date:2021-12-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6084 Å)
Cite:ARF GTPases activate Salmonella effector SopF to ADP-ribosylate host V-ATPase and inhibit endomembrane damage-induced autophagy.
Nat.Struct.Mol.Biol., 29, 2022
7DN9
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BU of 7dn9 by Molmil
Crystal structure of Salmonella effector in complex with NAD and host co-factor ARF1
Descriptor: ADP-ribosylation factor 1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ding, J, Shao, F.
Deposit date:2020-12-09
Release date:2021-12-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:ARF GTPases activate Salmonella effector SopF to ADP-ribosylate host V-ATPase and inhibit endomembrane damage-induced autophagy.
Nat.Struct.Mol.Biol., 29, 2022

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