Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 159 件

5J43
DownloadVisualize
BU of 5j43 by Molmil
CdiA-CT from uropathogenic Escherichia coli in complex with CysK
分子名称: Cysteine synthase A, tRNA nuclease CdiA
著者Morse, R.P, Goulding, C.W, Johnson, P.M.
登録日2016-03-31
公開日2016-07-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Unraveling the essential role of CysK in CDI toxin activation.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
6CP8
DownloadVisualize
BU of 6cp8 by Molmil
Contact-dependent growth inhibition toxin-immunity protein complex from from E. coli 3006
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CdiA, CdiI, ...
著者Michalska, K, Stols, L, Eschenfeldt, W, Hayes, C.S, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
登録日2018-03-13
公開日2019-03-13
最終更新日2020-01-01
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Convergent Evolution of the Barnase/EndoU/Colicin/RelE (BECR) Fold in Antibacterial tRNase Toxins.
Structure, 27, 2019
8PQQ
DownloadVisualize
BU of 8pqq by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88Q Mutant bound to Clofarabine
分子名称: 2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE, MAGNESIUM ION, Nucleoside 2-deoxyribosyltransferase
著者Tang, P, Harding, C.J, Czekster, M.C.
登録日2023-07-11
公開日2024-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
5HKQ
DownloadVisualize
BU of 5hkq by Molmil
Crystal structure of CDI complex from Escherichia coli STEC_O31
分子名称: CdiI immunity protein, Contact-dependent inhibitor A
著者Michalska, K, Stols, L, Eschenfeldt, W, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
登録日2016-01-14
公開日2017-01-18
最終更新日2020-03-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Functional plasticity of antibacterial EndoU toxins.
Mol.Microbiol., 109, 2018
6CP9
DownloadVisualize
BU of 6cp9 by Molmil
Contact-dependent growth inhibition toxin - immunity protein complex from Klebsiella pneumoniae 342
分子名称: CdiA, CdiI
著者Michalska, K, Stols, L, Eschenfeldt, W, Hayes, C.S, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
登録日2018-03-13
公開日2019-03-13
最終更新日2020-01-01
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Convergent Evolution of the Barnase/EndoU/Colicin/RelE (BECR) Fold in Antibacterial tRNase Toxins.
Structure, 27, 2019
8PZ0
DownloadVisualize
BU of 8pz0 by Molmil
Intracellular leucine aminopeptidase of Pseudomonas aeruginosa PA14.
分子名称: 1,2-ETHANEDIOL, BICARBONATE ION, CHLORIDE ION, ...
著者Simpson, M.C, Czekster, C.M, Harding, C.J.
登録日2023-07-26
公開日2023-11-15
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unveiling the Catalytic Mechanism of a Processive Metalloaminopeptidase.
Biochemistry, 62, 2023
8PZM
DownloadVisualize
BU of 8pzm by Molmil
Intracellular leucine aminopeptidase of Pseudomonas aeruginosa PA14 bound to bestatin inhibitor and manganese
分子名称: 1,2-ETHANEDIOL, 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, BICARBONATE ION, ...
著者Simpson, M.C, Czekster, C.M, Harding, C.J.
登録日2023-07-27
公開日2023-11-15
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Unveiling the Catalytic Mechanism of a Processive Metalloaminopeptidase.
Biochemistry, 62, 2023
8PZY
DownloadVisualize
BU of 8pzy by Molmil
Intracellular leucine aminopeptidase of Pseudomonas aeruginosa PA14 - hexameric assembly with manganese bound
分子名称: 1,2-ETHANEDIOL, 2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol, AMMONIUM ION, ...
著者Simpson, M.C, Czekster, C.M, Harding, C.J.
登録日2023-07-27
公開日2023-11-15
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Unveiling the Catalytic Mechanism of a Processive Metalloaminopeptidase.
Biochemistry, 62, 2023
6TAB
DownloadVisualize
BU of 6tab by Molmil
Bd0314 DslA wild-type form 2
分子名称: SLT domain-containing protein, SULFATE ION
著者Lovering, A.L, Harding, C.J.
登録日2019-10-29
公開日2020-07-15
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus.
Nat Commun, 11, 2020
8PQR
DownloadVisualize
BU of 8pqr by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to DAD_Immucillin-H
分子名称: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, Nucleoside 2-deoxyribosyltransferase
著者Tang, P, Harding, C.J, Czekster, C.M.
登録日2023-07-11
公開日2024-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.586 Å)
主引用文献Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
6TAF
DownloadVisualize
BU of 6taf by Molmil
Bd0314 DslA E154Q mutant
分子名称: ACETATE ION, SLT domain-containing protein, SULFATE ION
著者Lovering, A.L, Harding, C.J.
登録日2019-10-29
公開日2020-07-15
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.336 Å)
主引用文献A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus.
Nat Commun, 11, 2020
6TA9
DownloadVisualize
BU of 6ta9 by Molmil
Bd0314 DslA wild-type form 1
分子名称: SLT domain-containing protein, SULFATE ION
著者Lovering, A.L, Harding, C.J.
登録日2019-10-29
公開日2020-07-15
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.361 Å)
主引用文献A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus.
Nat Commun, 11, 2020
5E3E
DownloadVisualize
BU of 5e3e by Molmil
Crystal structure of CdiA-CT/CdiI complex from Y. kristensenii 33638
分子名称: CdiI immunity protein, Large exoprotein involved in heme utilization or adhesion, SODIUM ION
著者Michalska, K, Joachimiak, G, Jedrzejczak, R, Goulding, C.W, Joachimiak, A, Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI), Midwest Center for Structural Genomics (MCSG)
登録日2015-10-02
公開日2015-11-25
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamily.
Nucleic Acids Res., 45, 2017
7KW7
DownloadVisualize
BU of 7kw7 by Molmil
Atomic cryoEM structure of Hsp90-Hsp70-Hop-GR
分子名称: ADENOSINE-5'-DIPHOSPHATE, Glucocorticoid receptor, Heat shock 70 kDa protein 1A, ...
著者Wang, R.Y, Noddings, C.M, Kirschke, E, Myasnikov, A, Johnson, J.L, Agard, D.A.
登録日2020-11-30
公開日2021-12-08
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structure of Hsp90-Hsp70-Hop-GR reveals the Hsp90 client-loading mechanism.
Nature, 601, 2022
6TAD
DownloadVisualize
BU of 6tad by Molmil
Bd0314 DslA E143Q mutant
分子名称: SLT domain-containing protein
著者Lovering, A.L, Harding, C.J.
登録日2019-10-29
公開日2020-07-15
最終更新日2020-10-07
実験手法X-RAY DIFFRACTION (1.822 Å)
主引用文献A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus.
Nat Commun, 11, 2020
8PQP
DownloadVisualize
BU of 8pqp by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 D62N Mutant bound to ImmH-Forodesine
分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Nucleoside 2-deoxyribosyltransferase
著者Tang, P, Harding, C.J, Czekster, M.C.
登録日2023-07-11
公開日2024-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.709 Å)
主引用文献Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQT
DownloadVisualize
BU of 8pqt by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT bound to Bis-Tris
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Nucleoside 2-deoxyribosyltransferase
著者Tang, P, Harding, C.J, Czekster, C.M.
登録日2023-07-11
公開日2024-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
8PQS
DownloadVisualize
BU of 8pqs by Molmil
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 E88A Mutant
分子名称: Nucleoside 2-deoxyribosyltransferase
著者Tang, P, Harding, C.J, Czekster, C.M.
登録日2023-07-11
公開日2024-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Snapshots of the Reaction Coordinate of a Thermophilic 2'-Deoxyribonucleoside/ribonucleoside Transferase.
Acs Catalysis, 14, 2024
6N55
DownloadVisualize
BU of 6n55 by Molmil
Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidouridine
分子名称: 2'-azido-2'-deoxyuridine, GLYCEROL, PHOSPHATE ION, ...
著者Cuthbert, B.J, Nainar, S, Spitale, R.C, Goulding, C.W.
登録日2018-11-21
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.085 Å)
主引用文献An optimized chemical-genetic method for cell-specific metabolic labeling of RNA.
Nat.Methods, 17, 2020
5T87
DownloadVisualize
BU of 5t87 by Molmil
Crystal structure of CDI complex from Cupriavidus taiwanensis LMG 19424
分子名称: CdiA toxin, CdiI immunity protein
著者Michalska, K, Joachimiak, G, Jedrzejczak, R, Hayes, C.S, Goulding, C.W, Joachimiak, A, Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI), Midwest Center for Structural Genomics (MCSG)
登録日2016-09-06
公開日2017-09-13
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).
Proteins, 86 Suppl 1, 2018
6N53
DownloadVisualize
BU of 6n53 by Molmil
Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidouridine monophosphate
分子名称: 2'-deoxy-2'-triaza-1,2-dien-2-ium-1-yl-uridine-5'-monophosphate, GLYCEROL, MAGNESIUM ION, ...
著者Cuthbert, B.J, Nainar, S, Spitale, R.C, Goulding, C.W.
登録日2018-11-21
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献An optimized chemical-genetic method for cell-specific metabolic labeling of RNA.
Nat.Methods, 17, 2020
6N54
DownloadVisualize
BU of 6n54 by Molmil
Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidocytidine monophosphate
分子名称: 2'-azido-2'-deoxycytidine 5'-(dihydrogen phosphate), GLYCEROL, MAGNESIUM ION, ...
著者Cuthbert, B.J, Nainar, S, Spitale, R.C, Goulding, C.W.
登録日2018-11-21
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.424 Å)
主引用文献An optimized chemical-genetic method for cell-specific metabolic labeling of RNA.
Nat.Methods, 17, 2020
5T86
DownloadVisualize
BU of 5t86 by Molmil
Crystal structure of CDI complex from E. coli A0 34/86
分子名称: ACETATE ION, CdiA toxin, CdiI immunity protein
著者Michalska, K, Stols, L, Jedrzejczak, R, Hayes, C.S, Goulding, C.W, Joachimiak, A, Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI), Midwest Center for Structural Genomics (MCSG)
登録日2016-09-06
公開日2017-09-13
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of CDI complex from E. coli A0 34/86
To Be Published
5FFP
DownloadVisualize
BU of 5ffp by Molmil
Crystal structure of CdiI from Burkholderia dolosa AUO158
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Immunity 23 family protein
著者Michalska, K, Stols, L, Eschenfeldt, W, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
登録日2015-12-18
公開日2016-01-20
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of CdiI from Burkholderia dolosa AUO158
To Be Published
4G6V
DownloadVisualize
BU of 4g6v by Molmil
CdiA-CT/CdiI toxin and immunity complex from Burkholderia pseudomallei
分子名称: Adhesin/hemolysin, BROMIDE ION, CdiI
著者Morse, R.P, Nikolakakis, K, Willet, J, Gerrick, E, Low, D.A, Hayes, C.S, Goulding, C.W.
登録日2012-07-19
公開日2012-12-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structural basis of toxicity and immunity in contact-dependent growth inhibition (CDI) systems.
Proc.Natl.Acad.Sci.USA, 109, 2012

225681

件を2024-10-02に公開中

PDB statisticsPDBj update infoContact PDBjnumon