Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 39 件

7RB3
DownloadVisualize
BU of 7rb3 by Molmil
Cryo-EM structure of human binary NatC complex with a Bisubstrate inhibitor
分子名称: CARBOXYMETHYL COENZYME *A, LEUCINE, METHIONINE, ...
著者Deng, S, Marmorstein, R.
登録日2021-07-05
公開日2023-01-11
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Molecular role of NAA38 in thermostability and catalytic activity of the human NatC N-terminal acetyltransferase.
Structure, 31, 2023
7MX2
DownloadVisualize
BU of 7mx2 by Molmil
Cryo-EM structure of human ternary NatC complex with a Bisubstrate inhibitor
分子名称: CARBOXYMETHYL COENZYME *A, N-alpha-acetyltransferase 30, N-alpha-acetyltransferase 35, ...
著者Deng, S, Marmorstein, R.
登録日2021-05-18
公開日2022-12-14
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (3.64 Å)
主引用文献Molecular role of NAA38 in thermostability and catalytic activity of the human NatC N-terminal acetyltransferase.
Structure, 31, 2023
6O07
DownloadVisualize
BU of 6o07 by Molmil
Structure and mechanism of acetylation by the N-terminal dual enzyme NatA/Naa50 complex
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETYL COENZYME *A, CHLORIDE ION, ...
著者Deng, S, Marmorstein, R.
登録日2019-02-15
公開日2019-06-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.702 Å)
主引用文献Structure and Mechanism of Acetylation by the N-Terminal Dual Enzyme NatA/Naa50 Complex.
Structure, 27, 2019
6PPL
DownloadVisualize
BU of 6ppl by Molmil
Cryo-EM structure of human NatE complex (NatA/Naa50)
分子名称: ACETYL COENZYME *A, INOSITOL HEXAKISPHOSPHATE, N-alpha-acetyltransferase 10, ...
著者Deng, S, Marmorstein, R.
登録日2019-07-08
公開日2020-02-19
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Molecular basis for N-terminal acetylation by human NatE and its modulation by HYPK.
Nat Commun, 11, 2020
6PW9
DownloadVisualize
BU of 6pw9 by Molmil
Cryo-EM structure of human NatE/HYPK complex
分子名称: ACETYL COENZYME *A, Huntingtin-interacting protein K, INOSITOL HEXAKISPHOSPHATE, ...
著者Deng, S, Marmorstein, R.
登録日2019-07-22
公開日2020-02-19
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (4.03 Å)
主引用文献Molecular basis for N-terminal acetylation by human NatE and its modulation by HYPK.
Nat Commun, 11, 2020
6VP9
DownloadVisualize
BU of 6vp9 by Molmil
Cryo-EM structure of human NatB complex
分子名称: CARBOXYMETHYL COENZYME *A, MDVFM peptide, N-alpha-acetyltransferase 20, ...
著者Deng, S, Marmorstein, R.
登録日2020-02-02
公開日2020-09-23
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Molecular basis for N-terminal alpha-synuclein acetylation by human NatB.
Elife, 9, 2020
8ZV9
DownloadVisualize
BU of 8zv9 by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 Y453F epitope NYNYLFRLF
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, MHC class I antigen, ...
著者Deng, S.S, Jin, T.C, Xu, Z.H, Wang, M.H.
登録日2024-06-11
公開日2024-08-21
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural insights into immune escape at killer T cell epitope by SARS-CoV-2 Spike Y453F variants.
J.Biol.Chem., 300, 2024
8YE4
DownloadVisualize
BU of 8ye4 by Molmil
The complex of TCR NYN-I and HLA-A24 bound to SARS-CoV-2 Spike448-456 peptide NYNYLYRLF
分子名称: Beta-2-microglobulin, MHC class I antigen precusor, Spike protein S1, ...
著者Deng, S.S, Jin, T.C, Xu, Z.H, Wang, M.H.
登録日2024-02-21
公開日2024-08-21
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural insights into immune escape at killer T cell epitope by SARS-CoV-2 Spike Y453F variants.
J.Biol.Chem., 300, 2024
7KD7
DownloadVisualize
BU of 7kd7 by Molmil
Crystal structure of human NatD (NAA40) bound to a bisubstrate analogue
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AMINO GROUP, CARBOXYMETHYL COENZYME *A, ...
著者Deng, S, Marmorstein, R.
登録日2020-10-08
公開日2021-06-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Novel Bisubstrate Inhibitors for Protein N-Terminal Acetyltransferase D.
J.Med.Chem., 64, 2021
7KPU
DownloadVisualize
BU of 7kpu by Molmil
Crystal structure of human NatD (NAA40) bound to a bisubstrate analogue with a C-3 linker
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETYL GROUP, AMINO GROUP, ...
著者Deng, S, Marmorstein, R.
登録日2020-11-12
公開日2021-06-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Novel Bisubstrate Inhibitors for Protein N-Terminal Acetyltransferase D.
J.Med.Chem., 64, 2021
8T0P
DownloadVisualize
BU of 8t0p by Molmil
Structure of Cse4 bound to Ame1 and Okp1
分子名称: Histone H3-like centromeric protein CSE4, Inner kinetochore subunit AME1, Inner kinetochore subunit OKP1, ...
著者Deng, S, Harrison, S.C.
登録日2023-06-01
公開日2023-09-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Recognition of centromere-specific histone Cse4 by the inner kinetochore Okp1-Ame1 complex.
Embo Rep., 24, 2023
7STX
DownloadVisualize
BU of 7stx by Molmil
Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein
分子名称: ACETYL GROUP, Alpha-synuclein, COENZYME A, ...
著者Deng, S, Marmorstein, R.
登録日2021-11-15
公開日2021-12-22
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein
Not Published
7L1K
DownloadVisualize
BU of 7l1k by Molmil
Cryo-EM structure of S. Pombe NatC complex with a Bisubstrate inhibitor and inositol hexaphosphate
分子名称: CARBOXYMETHYL COENZYME *A, INOSITOL HEXAKISPHOSPHATE, MLGP peptide, ...
著者Deng, S, Marmorstein, R.
登録日2020-12-14
公開日2021-05-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Molecular mechanism of N-terminal acetylation by the ternary NatC complex.
Structure, 29, 2021
8HN4
DownloadVisualize
BU of 8hn4 by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope QYIKWPWYI
分子名称: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell epitope QYIKWPWYI
著者Deng, S.S, Jin, T.C, Xu, Z.H.
登録日2022-12-07
公開日2023-12-27
実験手法X-RAY DIFFRACTION (2.853 Å)
主引用文献Immune escape at SARS- CoV-2 killer T cell epitope
To be published
7F4W
DownloadVisualize
BU of 7f4w by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope pep4
分子名称: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope pep4
著者Deng, S, Jin, T.
登録日2021-06-21
公開日2021-08-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7EU2
DownloadVisualize
BU of 7eu2 by Molmil
Complex structure of HLA0201 with recognizing SARS-CoV-2 epitope S1
分子名称: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope S1
著者Deng, S, Jin, T.
登録日2021-05-15
公開日2021-08-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7QPB
DownloadVisualize
BU of 7qpb by Molmil
Catalytic C-lobe of the HECT-type ubiquitin ligase E6AP in complex with a hybrid foldamer-peptide macrocycle
分子名称: Isoform I of Ubiquitin-protein ligase E3A, hybrid foldamer-peptide macrocycle
著者Dengler, S, Howard, R.T, Morozov, V, Tsiamantas, C, Douat, C, Suga, H, Huc, I.
登録日2022-01-03
公開日2023-09-27
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (2.342 Å)
主引用文献Display Selection of a Hybrid Foldamer-Peptide Macrocycle.
Angew.Chem.Int.Ed.Engl., 62, 2023
4S1D
DownloadVisualize
BU of 4s1d by Molmil
Structure of IgG1 Fab fragment in complex with Biotincytidinamide
分子名称: MAB M33 FAB FRAGMENT, heavy chain, light chain, ...
著者Dengl, S, Hoffmann, E, Grote, M, Wagner, C, Mundigl, O, Georges, G, Theorey, I, Stubenrauch, K.-G, Bujotzek, A, Josel, H.-P, Dziadek, S, Benz, J, Brinkmann, U.
登録日2015-01-13
公開日2015-03-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Hapten-directed spontaneous disulfide shuffling: a universal technology for site-directed covalent coupling of payloads to antibodies.
Faseb J., 29, 2015
3GXW
DownloadVisualize
BU of 3gxw by Molmil
Structure of the SH2 domain of the Candida glabrata transcription elongation factor Spt6, crystal form A
分子名称: SODIUM ION, SUCCINIC ACID, Transcription elongation factor SPT6
著者Dengl, S, Mayer, A, Sun, M, Cramer, P.
登録日2009-04-03
公開日2009-05-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and in vivo requirement of the yeast Spt6 SH2 domain
J.Mol.Biol., 389, 2009
3GXX
DownloadVisualize
BU of 3gxx by Molmil
Structure of the SH2 domain of the Candida glabrata transcription elongation factor Spt6, crystal form B
分子名称: Transcription elongation factor SPT6
著者Dengl, S, Mayer, A, Sun, M, Cramer, P.
登録日2009-04-03
公開日2009-05-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure and in vivo requirement of the yeast Spt6 SH2 domain
J.Mol.Biol., 389, 2009
3H3V
DownloadVisualize
BU of 3h3v by Molmil
Yeast RNAP II containing poly(A)-signal sequence in the active site
分子名称: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*GP*CP*TP*GP*CP*TP*TP*TP*AP*TP*TP*GP*CP*AP*TP*T)-3', 5'-D(*CP*AP*GP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*CP*AP*AP*UP*AP*AP*A)-3', ...
著者Dengl, S, Cramer, P.
登録日2009-04-17
公開日2009-06-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro
J.Biol.Chem., 284, 2009
4HAI
DownloadVisualize
BU of 4hai by Molmil
Crystal structure of human soluble epoxide hydrolase complexed with N-cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide.
分子名称: Bifunctional epoxide hydrolase 2, MAGNESIUM ION, N-cycloheptyl-1-[(2,4,6-trimethylphenyl)sulfonyl]piperidine-4-carboxamide, ...
著者Pecic, S, Pakhomova, S, Newcomer, M.E, Morisseau, C, Hammock, B.D, Zhu, Z, Deng, S.
登録日2012-09-26
公開日2012-12-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Synthesis and structure-activity relationship of piperidine-derived non-urea soluble epoxide hydrolase inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
7WPA
DownloadVisualize
BU of 7wpa by Molmil
SARS-CoV-2 Omicron Variant SPIKE trimer complexed with ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
登録日2022-01-23
公開日2022-03-09
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WP9
DownloadVisualize
BU of 7wp9 by Molmil
SARS-CoV-2 Omicron Variant SPIKE trimer, all RBDs down
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
登録日2022-01-23
公開日2022-03-09
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (2.56 Å)
主引用文献Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPB
DownloadVisualize
BU of 7wpb by Molmil
SARS-CoV-2 Omicron Variant RBD complexed with ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, CHLORIDE ION, ...
著者Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
登録日2022-01-23
公開日2022-03-09
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022

 

12>

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon