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PDB: 36 results

7STX
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BU of 7stx by Molmil
Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein
Descriptor: ACETYL GROUP, Alpha-synuclein, COENZYME A, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2021-11-15
Release date:2021-12-22
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Cryo-EM structure of human NatB in complex with CoA-Alpha-Synuclein
Not Published
7RB3
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BU of 7rb3 by Molmil
Cryo-EM structure of human binary NatC complex with a Bisubstrate inhibitor
Descriptor: CARBOXYMETHYL COENZYME *A, LEUCINE, METHIONINE, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2021-07-05
Release date:2023-01-11
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Molecular role of NAA38 in thermostability and catalytic activity of the human NatC N-terminal acetyltransferase.
Structure, 31, 2023
6PPL
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BU of 6ppl by Molmil
Cryo-EM structure of human NatE complex (NatA/Naa50)
Descriptor: ACETYL COENZYME *A, INOSITOL HEXAKISPHOSPHATE, N-alpha-acetyltransferase 10, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2019-07-08
Release date:2020-02-19
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Molecular basis for N-terminal acetylation by human NatE and its modulation by HYPK.
Nat Commun, 11, 2020
6PW9
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Cryo-EM structure of human NatE/HYPK complex
Descriptor: ACETYL COENZYME *A, Huntingtin-interacting protein K, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2019-07-22
Release date:2020-02-19
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Molecular basis for N-terminal acetylation by human NatE and its modulation by HYPK.
Nat Commun, 11, 2020
6O07
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BU of 6o07 by Molmil
Structure and mechanism of acetylation by the N-terminal dual enzyme NatA/Naa50 complex
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETYL COENZYME *A, CHLORIDE ION, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2019-02-15
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Structure and Mechanism of Acetylation by the N-Terminal Dual Enzyme NatA/Naa50 Complex.
Structure, 27, 2019
8T0P
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BU of 8t0p by Molmil
Structure of Cse4 bound to Ame1 and Okp1
Descriptor: Histone H3-like centromeric protein CSE4, Inner kinetochore subunit AME1, Inner kinetochore subunit OKP1, ...
Authors:Deng, S, Harrison, S.C.
Deposit date:2023-06-01
Release date:2023-09-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Recognition of centromere-specific histone Cse4 by the inner kinetochore Okp1-Ame1 complex.
Embo Rep., 24, 2023
7MX2
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BU of 7mx2 by Molmil
Cryo-EM structure of human ternary NatC complex with a Bisubstrate inhibitor
Descriptor: CARBOXYMETHYL COENZYME *A, N-alpha-acetyltransferase 30, N-alpha-acetyltransferase 35, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2021-05-18
Release date:2022-12-14
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Molecular role of NAA38 in thermostability and catalytic activity of the human NatC N-terminal acetyltransferase.
Structure, 31, 2023
6VP9
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BU of 6vp9 by Molmil
Cryo-EM structure of human NatB complex
Descriptor: CARBOXYMETHYL COENZYME *A, MDVFM peptide, N-alpha-acetyltransferase 20, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2020-02-02
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Molecular basis for N-terminal alpha-synuclein acetylation by human NatB.
Elife, 9, 2020
7KD7
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BU of 7kd7 by Molmil
Crystal structure of human NatD (NAA40) bound to a bisubstrate analogue
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AMINO GROUP, CARBOXYMETHYL COENZYME *A, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2020-10-08
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Novel Bisubstrate Inhibitors for Protein N-Terminal Acetyltransferase D.
J.Med.Chem., 64, 2021
7KPU
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BU of 7kpu by Molmil
Crystal structure of human NatD (NAA40) bound to a bisubstrate analogue with a C-3 linker
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETYL GROUP, AMINO GROUP, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2020-11-12
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Novel Bisubstrate Inhibitors for Protein N-Terminal Acetyltransferase D.
J.Med.Chem., 64, 2021
7L1K
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BU of 7l1k by Molmil
Cryo-EM structure of S. Pombe NatC complex with a Bisubstrate inhibitor and inositol hexaphosphate
Descriptor: CARBOXYMETHYL COENZYME *A, INOSITOL HEXAKISPHOSPHATE, MLGP peptide, ...
Authors:Deng, S, Marmorstein, R.
Deposit date:2020-12-14
Release date:2021-05-12
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Molecular mechanism of N-terminal acetylation by the ternary NatC complex.
Structure, 29, 2021
7F4W
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BU of 7f4w by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope pep4
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope pep4
Authors:Deng, S, Jin, T.
Deposit date:2021-06-21
Release date:2021-08-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7EU2
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BU of 7eu2 by Molmil
Complex structure of HLA0201 with recognizing SARS-CoV-2 epitope S1
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope S1
Authors:Deng, S, Jin, T.
Deposit date:2021-05-15
Release date:2021-08-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7QPB
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BU of 7qpb by Molmil
Catalytic C-lobe of the HECT-type ubiquitin ligase E6AP in complex with a hybrid foldamer-peptide macrocycle
Descriptor: Isoform I of Ubiquitin-protein ligase E3A, hybrid foldamer-peptide macrocycle
Authors:Dengler, S, Howard, R.T, Morozov, V, Tsiamantas, C, Douat, C, Suga, H, Huc, I.
Deposit date:2022-01-03
Release date:2023-09-27
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.342 Å)
Cite:Display Selection of a Hybrid Foldamer-Peptide Macrocycle.
Angew.Chem.Int.Ed.Engl., 62, 2023
4S1D
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BU of 4s1d by Molmil
Structure of IgG1 Fab fragment in complex with Biotincytidinamide
Descriptor: MAB M33 FAB FRAGMENT, heavy chain, light chain, ...
Authors:Dengl, S, Hoffmann, E, Grote, M, Wagner, C, Mundigl, O, Georges, G, Theorey, I, Stubenrauch, K.-G, Bujotzek, A, Josel, H.-P, Dziadek, S, Benz, J, Brinkmann, U.
Deposit date:2015-01-13
Release date:2015-03-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Hapten-directed spontaneous disulfide shuffling: a universal technology for site-directed covalent coupling of payloads to antibodies.
Faseb J., 29, 2015
3H3V
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BU of 3h3v by Molmil
Yeast RNAP II containing poly(A)-signal sequence in the active site
Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*GP*CP*TP*GP*CP*TP*TP*TP*AP*TP*TP*GP*CP*AP*TP*T)-3', 5'-D(*CP*AP*GP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*CP*AP*AP*UP*AP*AP*A)-3', ...
Authors:Dengl, S, Cramer, P.
Deposit date:2009-04-17
Release date:2009-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (4 Å)
Cite:Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro
J.Biol.Chem., 284, 2009
3GXX
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BU of 3gxx by Molmil
Structure of the SH2 domain of the Candida glabrata transcription elongation factor Spt6, crystal form B
Descriptor: Transcription elongation factor SPT6
Authors:Dengl, S, Mayer, A, Sun, M, Cramer, P.
Deposit date:2009-04-03
Release date:2009-05-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and in vivo requirement of the yeast Spt6 SH2 domain
J.Mol.Biol., 389, 2009
3GXW
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BU of 3gxw by Molmil
Structure of the SH2 domain of the Candida glabrata transcription elongation factor Spt6, crystal form A
Descriptor: SODIUM ION, SUCCINIC ACID, Transcription elongation factor SPT6
Authors:Dengl, S, Mayer, A, Sun, M, Cramer, P.
Deposit date:2009-04-03
Release date:2009-05-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and in vivo requirement of the yeast Spt6 SH2 domain
J.Mol.Biol., 389, 2009
4HAI
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BU of 4hai by Molmil
Crystal structure of human soluble epoxide hydrolase complexed with N-cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide.
Descriptor: Bifunctional epoxide hydrolase 2, MAGNESIUM ION, N-cycloheptyl-1-[(2,4,6-trimethylphenyl)sulfonyl]piperidine-4-carboxamide, ...
Authors:Pecic, S, Pakhomova, S, Newcomer, M.E, Morisseau, C, Hammock, B.D, Zhu, Z, Deng, S.
Deposit date:2012-09-26
Release date:2012-12-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Synthesis and structure-activity relationship of piperidine-derived non-urea soluble epoxide hydrolase inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
7WP9
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BU of 7wp9 by Molmil
SARS-CoV-2 Omicron Variant SPIKE trimer, all RBDs down
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPA
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BU of 7wpa by Molmil
SARS-CoV-2 Omicron Variant SPIKE trimer complexed with ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPB
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BU of 7wpb by Molmil
SARS-CoV-2 Omicron Variant RBD complexed with ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, CHLORIDE ION, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPC
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BU of 7wpc by Molmil
The second RBD of SARS-CoV-2 Omicron Variant in complexed with RBD-ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
6ELL
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BU of 6ell by Molmil
FAB Fragment. AbVance: Increasing our knowledge of antibody structural space to enable faster and better decision making in antibody drug discovery
Descriptor: fAB heavy chain, fAB light chain
Authors:Benz, J, Weigand, S, Dengl, S, Schlothauer, T, Auer, J, Ehler, A, Kettenberger, H, Lorenz, S, Hirschheydt, T, Georges, G.
Deposit date:2017-09-29
Release date:2017-11-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in antibody drug discovery
To Be Published
6EMJ
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BU of 6emj by Molmil
FAB Fragment. AbVance: Increasing our knowledge of antibody structural space to enable faster and better decision making in antibody drug discovery
Descriptor: SODIUM ION, fAB heavy chain, fAb light chain
Authors:Benz, J, Weigand, S, Dengl, S, Schlothauer, T, Auer, J, Ehler, A, Kettenberger, H, Lorenz, S, Hirschheydt, T, Georges, G.
Deposit date:2017-10-02
Release date:2017-11-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in antibody drug discovery
To Be Published

 

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