Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 259 results

1RGE
DownloadVisualize
BU of 1rge by Molmil
HYDROLASE, GUANYLORIBONUCLEASE
Descriptor: GUANOSINE-2'-MONOPHOSPHATE, RIBONUCLEASE, SULFATE ION
Authors:Sevcik, J, Dauter, Z, Lamzin, V.S, Wilson, K.S.
Deposit date:1995-06-05
Release date:1996-10-14
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Ribonuclease from Streptomyces aureofaciens at atomic resolution.
Acta Crystallogr.,Sect.D, 52, 1996
1RGF
DownloadVisualize
BU of 1rgf by Molmil
HYDROLASE, GUANYLORIBONUCLEASE
Descriptor: RIBONUCLEASE, SULFATE ION
Authors:Sevcik, J, Dauter, Z, Lamzin, V.S, Wilson, K.S.
Deposit date:1995-06-05
Release date:1996-10-14
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Ribonuclease from Streptomyces aureofaciens at atomic resolution.
Acta Crystallogr.,Sect.D, 52, 1996
1RGG
DownloadVisualize
BU of 1rgg by Molmil
HYDROLASE, GUANYLORIBONUCLEASE
Descriptor: RIBONUCLEASE, SULFATE ION
Authors:Sevcik, J, Dauter, Z, Lamzin, V.S, Wilson, K.S.
Deposit date:1995-06-05
Release date:1996-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Ribonuclease from Streptomyces aureofaciens at atomic resolution.
Acta Crystallogr.,Sect.D, 52, 1996
3H1R
DownloadVisualize
BU of 3h1r by Molmil
Order-disorder structure of fluorescent protein FP480
Descriptor: Fluorescent protein FP480
Authors:Pletnev, S, Morozova, K.S, Verkhusha, V.V, Dauter, Z.
Deposit date:2009-04-13
Release date:2009-09-08
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Rotational order-disorder structure of fluorescent protein FP480
Acta Crystallogr.,Sect.D, 65, 2009
1QH6
DownloadVisualize
BU of 1qh6 by Molmil
CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE
Descriptor: XYLANASE, beta-D-xylopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-xylopyranose
Authors:Sabini, E, Sulzenbacher, G, Dauter, M, Dauter, Z, Jorgensen, P.L, Schulein, M, Dupont, C, Davies, G.J, Wilson, K.S.
Deposit date:1999-05-11
Release date:2000-05-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Catalysis and specificity in enzymatic glycoside hydrolysis: a 2,5B conformation for the glycosyl-enzyme intermediate revealed by the structure of the Bacillus agaradhaerens family 11 xylanase.
Chem.Biol., 6, 1999
6CCZ
DownloadVisualize
BU of 6ccz by Molmil
Crystal structure of Medicago truncatula serine hydroxymethyltransferase 3 (MtSHMT3) soaked with selenourea
Descriptor: ACETATE ION, FORMIC ACID, Serine hydroxymethyltransferase, ...
Authors:Ruszkowski, M, Sekula, B, Ruszkowska, A, Dauter, Z.
Deposit date:2018-02-07
Release date:2018-05-23
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Chloroplastic Serine Hydroxymethyltransferase FromMedicago truncatula: A Structural Characterization.
Front Plant Sci, 9, 2018
1QH7
DownloadVisualize
BU of 1qh7 by Molmil
CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE
Descriptor: XYLANASE, beta-D-xylopyranose
Authors:Sabini, E, Sulzenbacher, G, Dauter, M, Dauter, Z, Jorgensen, P.L, Schulein, M, Dupont, C, Davies, G.J, Wilson, K.S.
Deposit date:1999-05-11
Release date:2000-05-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Catalysis and specificity in enzymatic glycoside hydrolysis: a 2,5B conformation for the glycosyl-enzyme intermediate revealed by the structure of the Bacillus agaradhaerens family 11 xylanase.
Chem.Biol., 6, 1999
1RW1
DownloadVisualize
BU of 1rw1 by Molmil
YFFB (PA3664) PROTEIN
Descriptor: ISOPROPYL ALCOHOL, conserved hypothetical protein yffB
Authors:Teplyakov, A, Pullalarevu, S, Obmolova, G, Doseeva, V, Galkin, A, Herzberg, O, Dauter, M, Dauter, Z, Gilliland, G.L, Structure 2 Function Project (S2F)
Deposit date:2003-12-15
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Crystal structure of the YffB protein from Pseudomonas aeruginosa suggests a glutathione-dependent thiol reductase function.
Bmc Struct.Biol., 4, 2004
1O7J
DownloadVisualize
BU of 1o7j by Molmil
Atomic resolution structure of Erwinia chrysanthemi L-asparaginase
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, L-ASPARAGINASE, ...
Authors:Lubkowski, J, Dauter, M, Aghaiypour, K, Wlodawer, A, Dauter, Z.
Deposit date:2002-11-07
Release date:2002-12-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic Resolution Structure of Erwinia Chrysanthemi L-Asparaginase
Acta Crystallogr.,Sect.D, 59, 2003
3HQX
DownloadVisualize
BU of 3hqx by Molmil
Crystal structure of protein of unknown function (DUF1255,PF06865) from Acinetobacter sp. ADP1
Descriptor: UPF0345 protein ACIAD0356
Authors:Nocek, B, Hatzos, C, Freeman, L, Dauter, Z, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-06-08
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of protein of unknown function (DUF1255,PF06865) from Acinetobacter sp. ADP1
To be Published
6CD1
DownloadVisualize
BU of 6cd1 by Molmil
Crystal structure of Medicago truncatula serine hydroxymethyltransferase 3 (MtSHMT3), complexes with reaction intermediates
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, GLYCINE, ...
Authors:Ruszkowski, M, Sekula, B, Ruszkowska, A, Dauter, Z.
Deposit date:2018-02-07
Release date:2018-05-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Chloroplastic Serine Hydroxymethyltransferase FromMedicago truncatula: A Structural Characterization.
Front Plant Sci, 9, 2018
5VF2
DownloadVisualize
BU of 5vf2 by Molmil
scFv 2D10 re-refined as a complex with trehalose replacing the original alpha-1,6-mannobiose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, UNKNOWN ATOM OR ION, ...
Authors:Porebski, P.J, Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B.
Deposit date:2017-04-06
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Detect, correct, retract: How to manage incorrect structural models.
FEBS J., 285, 2018
5VLD
DownloadVisualize
BU of 5vld by Molmil
Crystal Structure of Medicago truncatula L-Histidinol Dehydrogenase in Complex with L-Histidine and NAD+
Descriptor: DI(HYDROXYETHYL)ETHER, HISTIDINE, Histidinol dehydrogenase, ...
Authors:Ruszkowski, M, Dauter, Z.
Deposit date:2017-04-25
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structures of Medicago truncatula L-Histidinol Dehydrogenase Show Rearrangements Required for NAD(+) Binding and the Cofactor Positioned to Accept a Hydride.
Sci Rep, 7, 2017
5VF5
DownloadVisualize
BU of 5vf5 by Molmil
Crystal structure of the vicilin from Solanum melongena, re-refinement
Descriptor: ACETATE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Porebski, P.J, Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B.
Deposit date:2017-04-06
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Detect, correct, retract: How to manage incorrect structural models.
FEBS J., 285, 2018
5VLB
DownloadVisualize
BU of 5vlb by Molmil
Crystal Structure of Medicago truncatula L-Histidinol Dehydrogenase in Complex with Imidazole
Descriptor: DI(HYDROXYETHYL)ETHER, Histidinol dehydrogenase, chloroplastic, ...
Authors:Ruszkowski, M, Dauter, Z.
Deposit date:2017-04-25
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of Medicago truncatula L-Histidinol Dehydrogenase Show Rearrangements Required for NAD(+) Binding and the Cofactor Positioned to Accept a Hydride.
Sci Rep, 7, 2017
3SIX
DownloadVisualize
BU of 3six by Molmil
Crystal structure of NodZ alpha-1,6-fucosyltransferase soaked with GDP-fucose
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, Nodulation fucosyltransferase NodZ, ...
Authors:Brzezinski, K, Dauter, Z, Jaskolski, M.
Deposit date:2011-06-20
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structures of NodZ alpha-1,6-fucosyltransferase in complex with GDP and GDP-fucose
Acta Crystallogr.,Sect.D, 68, 2012
3SIW
DownloadVisualize
BU of 3siw by Molmil
Crystal structure of NodZ alpha-1,6-fucosyltransferase co-crystallized with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Nodulation fucosyltransferase NodZ, PHOSPHATE ION
Authors:Brzezinski, K, Dauter, Z, Jaskolski, M.
Deposit date:2011-06-20
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of NodZ alpha-1,6-fucosyltransferase in complex with GDP and GDP-fucose
Acta Crystallogr.,Sect.D, 68, 2012
2BCH
DownloadVisualize
BU of 2bch by Molmil
A possible of Second calcium ion in interfacial binding: Atomic and Medium resolution crystal structures of the quadruple mutant of phospholipase A2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Sekar, K, Yogavel, M, Velmurugan, D, Poi, M.J, Dauter, Z, Tsai, M.D.
Deposit date:2005-10-19
Release date:2006-07-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Suggestive evidence for the involvement of the second calcium and surface loop in interfacial binding: monoclinic and trigonal crystal structures of a quadruple mutant of phospholipase A(2).
Acta Crystallogr.,Sect.D, 62, 2006
6BQ7
DownloadVisualize
BU of 6bq7 by Molmil
Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS) in complex with spermidine
Descriptor: SPERMIDINE, Thermospermine synthase
Authors:Sekula, B, Dauter, Z.
Deposit date:2017-11-27
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of thermospermine synthase fromMedicago truncatulaand substrate discriminatory features of plant aminopropyltransferases.
Biochem. J., 475, 2018
6BQ2
DownloadVisualize
BU of 6bq2 by Molmil
Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS)
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Thermospermine synthase ACAULIS protein
Authors:Sekula, B, Dauter, Z.
Deposit date:2017-11-27
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of thermospermine synthase fromMedicago truncatulaand substrate discriminatory features of plant aminopropyltransferases.
Biochem. J., 475, 2018
6BQ4
DownloadVisualize
BU of 6bq4 by Molmil
Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS) in complex with adenosine
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE, ...
Authors:Sekula, B, Dauter, Z.
Deposit date:2017-11-27
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of thermospermine synthase fromMedicago truncatulaand substrate discriminatory features of plant aminopropyltransferases.
Biochem. J., 475, 2018
6BQ5
DownloadVisualize
BU of 6bq5 by Molmil
Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS) in complex with 5'-methylthioadenosine
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, GLYCEROL, ...
Authors:Sekula, B, Dauter, Z.
Deposit date:2017-11-27
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of thermospermine synthase fromMedicago truncatulaand substrate discriminatory features of plant aminopropyltransferases.
Biochem. J., 475, 2018
6BQ6
DownloadVisualize
BU of 6bq6 by Molmil
Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS) in complex with thermospermine
Descriptor: CHLORIDE ION, N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE, Thermospermine synthase
Authors:Sekula, B, Dauter, Z.
Deposit date:2017-11-27
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of thermospermine synthase fromMedicago truncatulaand substrate discriminatory features of plant aminopropyltransferases.
Biochem. J., 475, 2018
6BQ3
DownloadVisualize
BU of 6bq3 by Molmil
Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS) in complex with 5'-S-(3-aminopropyl)-5'-thioadenosine
Descriptor: 5'-S-(3-aminopropyl)-5'-thioadenosine, Thermospermine synthase
Authors:Sekula, B, Dauter, Z.
Deposit date:2017-11-27
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of thermospermine synthase fromMedicago truncatulaand substrate discriminatory features of plant aminopropyltransferases.
Biochem. J., 475, 2018
2CTH
DownloadVisualize
BU of 2cth by Molmil
CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH
Descriptor: CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Simoes, P, Matias, P.M, Morais, J, Wilson, K, Dauter, Z, Carrondo, M.A.
Deposit date:1997-06-18
Release date:1997-12-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Refinement of the Three-Dimensional Structures of Cytochromes C3 from Desulfovibrio Vulgaris Hildenborough at 1.67 Angstrom Resolution and from Desulfovibrio Desulfuricans Atcc 27774 at 1.6 Angstrom Resolution
Inorg.Chim.Acta., 273, 1998

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon