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PDB: 3028 results

3RAX
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BU of 3rax by Molmil
Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ...
Authors:Rechkoblit, O, Patel, D.J.
Deposit date:2011-03-28
Release date:2011-06-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.891 Å)
Cite:Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions.
Structure, 19, 2011
3RLZ
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BU of 3rlz by Molmil
2.0 Angstrom X-ray structure of bovine Ca(2+)-S100B D63N
Descriptor: CALCIUM ION, Protein S100-B
Authors:Liriano, M.A, Weber, D.J.
Deposit date:2011-04-20
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The effects of CapZ peptide (TRTK12) on the protein dynamics of S100B and S100B D63N
To be Published
3RR3
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BU of 3rr3 by Molmil
Structure of (R)-flurbiprofen bound to mCOX-2
Descriptor: (2R)-2-(3-fluoro-4-phenyl-phenyl)propanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Duggan, K.C, Hermanson, D.J, Musee, J, Prusakiewicz, J.J, Scheib, J, Carter, B.D, Banerjee, S, Oates, J.A, Marnett, L.J.
Deposit date:2011-04-28
Release date:2011-11-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.842 Å)
Cite:(R)-Profens are substrate-selective inhibitors of endocannabinoid oxygenation by COX-2.
Nat.Chem.Biol., 7, 2011
3OWI
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BU of 3owi by Molmil
Crystal structure of the glycine riboswitch bound to glycine
Descriptor: Domain II of glycine riboswitch, GLYCINE, MAGNESIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-19
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.845 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXD
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BU of 3oxd by Molmil
Crystal structure of glycine riboswitch with two mutations
Descriptor: MAGNESIUM ION, domain II of glycine riboswitch
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3RV1
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BU of 3rv1 by Molmil
Crystal structure of the N-terminal and RNase III domains of K. polysporus Dcr1 E224Q mutant
Descriptor: K. polysporus Dcr1
Authors:Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
Deposit date:2011-05-05
Release date:2011-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
3RVH
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BU of 3rvh by Molmil
Crystal Structure of JMJD2A Complexed with Inhibitor
Descriptor: 8-hydroxy-3-(piperazin-1-yl)quinoline-5-carboxylic acid, GLYCEROL, Lysine-specific demethylase 4A, ...
Authors:King, O.N.F, Maloney, D.J, Tumber, A, Rai, G, Jadhav, A, Clifton, I.J, Heightman, T.D, Simeonov, A, McDonough, M.A, Schofield, C.J.
Deposit date:2011-05-06
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Crystal Structure of JMJD2A Complexed with Inhibitor
To be Published
3RYO
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BU of 3ryo by Molmil
Crystal Structure of Enhanced Intracellular Survival (Eis) Protein from Mycobacterium tuberculosis with Acetyl CoA
Descriptor: ACETYL COENZYME *A, Enhanced intracellular survival protein
Authors:Kim, K.H, An, D.R, Yoon, J.Y, Kim, H.S, Yoon, H.J, Song, J, Im, H.N, Kim, J, Kim, D.J, Lee, S.J, Kim, H.J, Lee, J.Y, Suh, S.W.
Deposit date:2011-05-11
Release date:2012-05-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mycobacterium tuberculosis Eis protein initiates suppression of host immune responses by acetylation of DUSP16/MKP-7
Proc.Natl.Acad.Sci.USA, 2012
3RW6
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BU of 3rw6 by Molmil
Structure of nuclear RNA export factor TAP bound to CTE RNA
Descriptor: Nuclear RNA export factor 1, constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA
Authors:Teplova, M, Khin, N.W, Patel, D.J, Izaurralde, E.
Deposit date:2011-05-07
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-function studies of nucleocytoplasmic transport of retroviral genomic RNA by mRNA export factor TAP.
Nat.Struct.Mol.Biol., 18, 2011
3RWV
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BU of 3rwv by Molmil
Crystal Structure of apo-form of Human Glycolipid Transfer Protein at 1.5 A resolution
Descriptor: Glycolipid transfer protein, SULFATE ION
Authors:Samygina, V, Cabo-Bilbao, A, Popov, A.N, Ochoa-Lizarralde, B, Goni-de-Cerio, F, Patel, D.J, Brown, R.E, Malinina, L.
Deposit date:2011-05-09
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3PT6
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BU of 3pt6 by Molmil
Crystal structure of mouse DNMT1(650-1602) in complex with DNA
Descriptor: DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Song, J, Patel, D.J.
Deposit date:2010-12-02
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation.
Science, 331, 2011
3S0K
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BU of 3s0k by Molmil
Crystal Structure of Human Glycolipid Transfer Protein complexed with glucosylceramide containing oleoyl acyl chain (18:1)
Descriptor: (9Z)-N-[(2S,3R,4E)-1-(beta-D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]octadec-9-enamide, Glycolipid transfer protein, NICKEL (II) ION
Authors:Cabo-Bilbao, A, Samygina, V, Popov, A.N, Ochoa-Lizarralde, B, Goni-de-Cerio, F, Patel, D.J, Brown, R.E, Malinina, L.
Deposit date:2011-05-13
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3RW7
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BU of 3rw7 by Molmil
Structure of N-terminal domain of nuclear RNA export factor TAP
Descriptor: Nuclear RNA export factor 1
Authors:Teplova, M, Khin, N.W, Wohlbold, L, Izaurralde, E, Patel, D.J.
Deposit date:2011-05-07
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-function studies of nucleocytoplasmic transport of retroviral genomic RNA by mRNA export factor TAP.
Nat.Struct.Mol.Biol., 18, 2011
3S0I
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BU of 3s0i by Molmil
Crystal Structure of D48V mutant of Human Glycolipid Transfer Protein complexed with 3-O-sulfo galactosylceramide containing nervonoyl acyl chain
Descriptor: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, Glycolipid transfer protein
Authors:Samygina, V, Popov, A.N, Cabo-Bilbao, A, Ochoa-Lizarralde, B, Patel, D.J, Brown, R.E, Malinina, L.
Deposit date:2011-05-13
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3QY8
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BU of 3qy8 by Molmil
Crystal structures of YwqE from Bacillus subtilis and CpsB from Streptococcus pneumoniae, unique metal-dependent tyrosine phosphatases
Descriptor: FE (III) ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Kim, H.S, Lee, S.J, Yoon, H.J, An, D.R, Kim, D.J, Kim, S.-J, Suh, S.W.
Deposit date:2011-03-03
Release date:2011-06-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of YwqE from Bacillus subtilis and CpsB from Streptococcus pneumoniae, unique metal-dependent tyrosine phosphatases.
J.Struct.Biol., 175, 2011
3QT9
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BU of 3qt9 by Molmil
Analysis of a new family of widely distributed metal-independent alpha mannosidases provides unique insight into the processing of N-linked glycans, Clostridium perfringens CPE0426 complexed with alpha-1,6-linked 1-thio-alpha-mannobiose
Descriptor: 1,2-ETHANEDIOL, Putative uncharacterized protein CPE0426, alpha-D-mannopyranose-(1-6)-6-thio-alpha-D-mannopyranose
Authors:Gregg, K.J, Zandberg, W.F, Hehemann, J.-H, Whitworth, G.E, Deng, L.E, Vocadlo, D.J, Boraston, A.B.
Deposit date:2011-02-22
Release date:2011-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Analysis of a New Family of Widely Distributed Metal-independent {alpha}-Mannosidases Provides Unique Insight into the Processing of N-Linked Glycans.
J.Biol.Chem., 286, 2011
3RV0
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BU of 3rv0 by Molmil
Crystal structure of K. polysporus Dcr1 without the C-terminal dsRBD
Descriptor: K. polysporus Dcr1, MAGNESIUM ION
Authors:Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
Deposit date:2011-05-05
Release date:2011-08-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
3RZN
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BU of 3rzn by Molmil
Crystal Structure of Human Glycolipid Transfer Protein complexed with 3-O-sulfo-galactosylceramide containing nervonoyl acyl chain (24:1)
Descriptor: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, Glycolipid transfer protein
Authors:Samygina, V, Cabo-Bilbao, A, Popov, A.N, Ochoa-Lizarralde, B, Patel, D.J, Brown, R.E, Malinina, L.
Deposit date:2011-05-12
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3SID
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BU of 3sid by Molmil
Crystal structure of oxidized Symerythrin from Cyanophora paradoxa, azide adduct at 50% occupancy
Descriptor: AZIDE ION, FE (III) ION, Symerythrin
Authors:Cooley, R.B, Arp, D.J, Karplus, P.A.
Deposit date:2011-06-17
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Symerythrin structures at atomic resolution and the origins of rubrerythrins and the ferritin-like superfamily.
J.Mol.Biol., 413, 2011
3SLM
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BU of 3slm by Molmil
Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA (68-MER), ...
Authors:Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A.A.
Deposit date:2011-06-24
Release date:2011-08-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3OD4
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BU of 3od4 by Molmil
Crystal Structure of Factor Inhibiting HIF-1 Alpha Complexed with Inhibitor
Descriptor: 8-hydroxyquinoline-5-carboxylic acid, GLYCEROL, Hypoxia-inducible factor 1-alpha inhibitor, ...
Authors:King, O.N.F, Bashford-Rogers, R, Maloney, D.J, Jadhav, A, Heightman, T.D, Simeonov, A, Clifton, I.J, McDonough, M.A, Schofield, C.J.
Deposit date:2010-08-10
Release date:2011-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Factor Inhibiting HIF-1 Alpha Complexed with Inhibitor
To be Published
3SKT
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BU of 3skt by Molmil
Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, manganese Soak
Descriptor: 2'-DEOXY-GUANOSINE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Pikovskaya, O, Polonskaia, A, Patel, D.J, Serganov, A.
Deposit date:2011-06-23
Release date:2011-08-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.
Nat.Chem.Biol., 7, 2011
3S6P
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BU of 3s6p by Molmil
Crystal Structure of Helicoverpa Armigera Stunt Virus
Descriptor: CALCIUM ION, CHLORIDE ION, Capsid protein
Authors:Speir, J.A, Chen, Z, Taylor, D.J, Johnson, J.E.
Deposit date:2011-05-25
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Helicoverpa armigera stunt virus
To be Published
3QOQ
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BU of 3qoq by Molmil
Crystal Structure of the Transcription Factor AmrZ in Complex with the 18 Base Pair amrZ1 Binding Site
Descriptor: Alginate and motility regulator Z, DNA (5'-D(*AP*CP*TP*GP*GP*CP*AP*AP*AP*AP*CP*GP*CP*CP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*GP*GP*CP*GP*TP*TP*TP*TP*GP*CP*CP*AP*GP*T)-3')
Authors:Pryor Jr, E.E, Wozniak, D.J, Hollis, T.
Deposit date:2011-02-10
Release date:2012-02-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Transcription Factor AmrZ Utilizes Multiple DNA Binding Modes to Recognize Activator and Repressor Sequences of Pseudomonas aeruginosa Virulence Genes.
Plos Pathog., 8, 2012
3QPF
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BU of 3qpf by Molmil
Analysis of a New Family of Widely Distributed Metal-independent alpha-Mannosidases Provides Unique Insight into the Processing of N-linked Glycans, Streptococcus pneumoniae SP_2144 apo-structure
Descriptor: 1,2-ETHANEDIOL, Putative uncharacterized protein
Authors:Gregg, K.J, Zandberg, W.F, Hehemann, J.-H, Whitworth, G.E, Deng, L.E, Vocadlo, D.J.
Deposit date:2011-02-12
Release date:2011-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Analysis of a New Family of Widely Distributed Metal-independent {alpha}-Mannosidases Provides Unique Insight into the Processing of N-Linked Glycans.
J.Biol.Chem., 286, 2011

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