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PDB: 2998 件

7MEJ
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CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36
分子名称: Nanobody Nb21, Nanobody Nb36, Spike protein S1
著者Huang, W, Taylor, D.J.
登録日2021-04-06
公開日2021-08-11
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
5J7X
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Baeyer-Villiger monooxygenase BVMOAFL838 from Aspergillus flavus
分子名称: Dimethylaniline monooxygenase, putative, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Ferroni, F.M, Tolmie, C, Smit, M.S, Opperman, D.J.
登録日2016-04-07
公開日2016-08-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and Catalytic Characterization of a Fungal Baeyer-Villiger Monooxygenase.
Plos One, 11, 2016
7MDW
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CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb105
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, nanobody Nb105, ...
著者Huang, W, Taylor, D.J.
登録日2021-04-06
公開日2021-08-11
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
7ME7
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CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb17 and Nb105
分子名称: Nanobody Nb105, Nanobody Nb17, Spike protein S1
著者Huang, W, Taylor, D.J.
登録日2021-04-06
公開日2021-08-11
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes
Nat Commun, 12, 2021
2B5W
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Crystal structure of D38C glucose dehydrogenase mutant from Haloferax mediterranei
分子名称: CITRATE ANION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, ...
著者Britton, K.L, Baker, P.J, Fisher, M, Ruzheinikov, S, Gilmour, D.J, Bonete, M.-J, Ferrer, J, Pire, C, Esclapez, J, Rice, D.W.
登録日2005-09-29
公開日2006-04-04
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Analysis of protein solvent interactions in glucose dehydrogenase from the extreme halophile Haloferax mediterranei.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2Y9E
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Structural basis for the allosteric interference of myosin function by mutants G680A and G680V of Dictyostelium myosin-2
分子名称: MYOSIN-2
著者Preller, M, Bauer, S, Adamek, N, Fujita-Becker, S, Fedorov, R, Geeves, M.A, Manstein, D.J.
登録日2011-02-14
公開日2011-07-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.397 Å)
主引用文献Structural Basis for the Allosteric Interference of Myosin Function by Reactive Thiol Region Mutations G680A and G680V.
J.Biol.Chem., 286, 2011
5FQH
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BU of 5fqh by Molmil
The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, BETA-N-ACETYLGALACTOSAMINIDASE, PHOSPHATE ION
著者Noach, I, Pluvinage, B, Laurie, C, Abe, K.T, Alteen, M, Vocadlo, D.J, Boraston, A.B.
登録日2015-12-10
公開日2016-03-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium Perfringens
J.Mol.Biol., 428, 2016
7NIT
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X-ray structure of a multidomain BbgIII from Bifidobacterium bifidum
分子名称: Beta-galactosidase, CALCIUM ION, GLYCEROL, ...
著者Moroz, O.V, Blagova, E, Lebedev, A.A, Sanchez Rodriguez, F, Rigden, D.J, Tams, J.W, Wilting, R, Vester, J.K, Longhin, E, Krogh, K.B.R, Pache, R.A, Davies, G.J, Wilson, K.S.
登録日2021-02-14
公開日2021-12-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Multitasking in the gut: the X-ray structure of the multidomain BbgIII from Bifidobacterium bifidum offers possible explanations for its alternative functions.
Acta Crystallogr D Struct Biol, 77, 2021
2XZS
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BU of 2xzs by Molmil
Death associated protein kinase 1 residues 1-312
分子名称: DEATH ASSOCIATED KINASE 1, MAGNESIUM ION
著者Yumerefendi, H, Mas, P.J, Dordevic, N, McCarthy, A.A, Hart, D.J.
登録日2010-11-29
公開日2011-12-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Death-Associated Protein Kinase Activity is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites.
Structure, 24, 2016
5FK0
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Yeast delta-COP-I mu-homology domain
分子名称: CALCIUM ION, COATOMER SUBUNIT DELTA
著者Suckling, R.J, Evans, P.R, Owen, D.J.
登録日2015-10-14
公開日2015-11-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Basis for the Binding of Tryptophan-Based Motifs by Delta-Cop.
Proc.Natl.Acad.Sci.USA, 112, 2015
5FR0
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BU of 5fr0 by Molmil
The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens
分子名称: 2-deoxy-2-[(difluoroacetyl)amino]-beta-D-galactopyranose, BETA-N-ACETYLGALACTOSAMINIDASE, PHOSPHATE ION
著者Noach, I, Pluvinage, B, Laurie, C, Abe, K.T, Alteen, M, Vocadlo, D.J, Boraston, A.B.
登録日2015-12-14
公開日2016-03-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium Perfringens
J.Mol.Biol., 428, 2016
2BGZ
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ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.
分子名称: FLAGELLAR HOOK PROTEIN FLGE
著者Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, Derosier, D.J.
登録日2005-01-06
公開日2005-01-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (9 Å)
主引用文献A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
5ER5
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BU of 5er5 by Molmil
Crystal Structure of Calcium-loaded S100B bound to SC1990
分子名称: CALCIUM ION, ETHIDIUM, Protein S100-B
著者Cavalier, M.C, Melville, Z.E, Aligholizadeh, E, Fang, L, Alasady, M.J, Pierce, A.D, Wilder, P.T, MacKerell Jr, A.D, Weber, D.J.
登録日2015-11-13
公開日2016-06-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献Novel protein-inhibitor interactions in site 3 of Ca(2+)-bound S100B as discovered by X-ray crystallography.
Acta Crystallogr D Struct Biol, 72, 2016
2XX0
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STRUCTURE OF THE N90S-H254F MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COPPER (II) ION, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, ...
著者Antonyuk, S.V, Leferink, N.G.H, Han, C, Heyes, D.J, Rigby, S.E.J, Hough, M.A, Eady, R.R, Scrutton, N.S, Hasnain, S.S.
登録日2010-11-07
公開日2011-05-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Proton-Coupled Electron Transfer in the Catalytic Cycle of Alcaligenes Xylosoxidans Copper-Dependent Nitrite Reductase.
Biochemistry, 50, 2011
5HPN
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A circularly permuted PduA forming an icosahedral cage
分子名称: Permuted PduA, SULFATE ION
著者Leibly, D.J, Jorda, J, Yeates, T.O.
登録日2016-01-20
公開日2016-04-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.509 Å)
主引用文献Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.
Chem.Commun.(Camb.), 52, 2016
7LHC
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BU of 7lhc by Molmil
NMR Solution Structure of [T20K]kalata B1
分子名称: Kalata-B1
著者Harvey, P.J, Craik, D.J, Gruber, C.W.
登録日2021-01-22
公開日2021-10-20
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Importance of the Cyclic Cystine Knot Structural Motif for Immunosuppressive Effects of Cyclotides.
Acs Chem.Biol., 16, 2021
5DR6
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BU of 5dr6 by Molmil
Aurora A Kinase in Complex with AA30 and JNJ-7706621 in Space Group P6122
分子名称: 2-(3-bromophenyl)quinoline-4-carboxylic acid, 4-({5-amino-1-[(2,6-difluorophenyl)carbonyl]-1H-1,2,4-triazol-3-yl}amino)benzenesulfonamide, Aurora kinase A
著者Janecek, M, Rossmann, M, Sharma, P, Emery, A, McKenzie, G.J, Huggins, D.J, Stockwell, S, Stokes, J.A, Almeida, E.G, Hardwick, B, Narvaez, A.J, Hyvonen, M, Spring, D.R, Venkitaraman, A.R.
登録日2015-09-15
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.534 Å)
主引用文献Allosteric modulation of AURKA kinase activity by a small-molecule inhibitor of its protein-protein interaction with TPX2.
Sci Rep, 6, 2016
2XWZ
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STRUCTURE OF THE RECOMBINANT NATIVE NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS complexed with nitrite
分子名称: ACETATE ION, COPPER (II) ION, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, ...
著者Antonyuk, S.V, Leferink, N.G.H, Han, C, Heyes, D.J, Rigby, S.E.J, Hough, M.A, Eady, R.R, Scrutton, N.S, Hasnain, S.S.
登録日2010-11-06
公開日2011-05-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Proton-Coupled Electron Transfer in the Catalytic Cycle of Alcaligenes Xylosoxidans Copper-Dependent Nitrite Reductase.
Biochemistry, 50, 2011
5DUN
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BU of 5dun by Molmil
The crystal structure of OMe substituted twister ribozyme
分子名称: MAGNESIUM ION, POTASSIUM ION, RNA (54-MER)
著者Ren, A, Patel, D.J, Micura, R, Rajashankar, K.R.
登録日2015-09-19
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.
Angew.Chem.Int.Ed.Engl., 54, 2015
2Y0A
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BU of 2y0a by Molmil
Structure of DAPK1 construct residues 1-304
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DEATH-ASSOCIATED PROTEIN KINASE 1
著者Yumerefendi, H, Mas, P.J, Dordevic, N, McCarthy, A.A, Hart, D.J.
登録日2010-12-01
公開日2011-12-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Library-Based Construct Screening of Death-Associated Protein Kinase 1 Identifies the Minimal Calmodulin Interaction Region and Autoinhibitory Conformation of the Catalytic Domain
To be Published
5JDX
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BU of 5jdx by Molmil
PigG holo
分子名称: 4'-PHOSPHOPANTETHEINE, Putative peptidyl carrier protein
著者Jaremko, M.J, Lee, D.J, Burkart, M.D.
登録日2016-04-17
公開日2017-08-23
最終更新日2019-12-04
実験手法SOLUTION NMR
主引用文献PigG holo
To Be Published
5FQF
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BU of 5fqf by Molmil
The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, BETA-N-ACETYLGALACTOSAMINIDASE, FORMIC ACID
著者Noach, I, Pluvinage, B, Laurie, C, Abe, K.T, Alteen, M, Vocadlo, D.J, Boraston, A.B.
登録日2015-12-10
公開日2016-03-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium Perfringens
J.Mol.Biol., 428, 2016
2YA0
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Catalytic Module of the Multi-modular glycogen-degrading pneumococcal virulence factor SpuA
分子名称: CALCIUM ION, GLYCEROL, PUTATIVE ALKALINE AMYLOPULLULANASE, ...
著者Lammerts van Bueren, A, Ficko-Blean, E, Pluvinage, B, Hehemann, J.H, Higgins, M.A, Deng, L, Ogunniyi, A.D, Stroeher, U.H, Warry, N.E, Burke, R.D, Czjzek, M, Paton, J.C, Vocadlo, D.J, Boraston, A.B.
登録日2011-02-17
公開日2011-04-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The Conformation and Function of a Multimodular Glycogen-Degrading Pneumococcal Virulence Factor.
Structure, 19, 2011
5FL1
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Structure of a hydrolase with an inhibitor
分子名称: (3~{a}~{R},5~{R},6~{S},7~{R},7~{a}~{R})-5-(hydroxymethyl)-2-(prop-2-enylamino)-5,6,7,7~{a}-tetrahydro-3~{a}~{H}-pyrano[3,2-d][1,3]thiazole-6,7-diol, 1,2-ETHANEDIOL, CALCIUM ION, ...
著者Cekic, N, Heinonen, J.E, Stubbs, K.A, Roth, C, McEachern, E.J, Davies, G.J, Vocadlo, D.J.
登録日2015-10-20
公開日2016-08-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Analysis of transition state mimicry by tight binding aminothiazoline inhibitors provides insight into catalysis by humanO-GlcNAcase.
Chem Sci, 7, 2016
2YNN
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BU of 2ynn by Molmil
yeast betaprime COP 1-304 with KTKTN motif
分子名称: COATOMER SUBUNIT BETA', KTKTN MOTIF, SULFATE ION
著者Jackson, L.P, Lewis, M, Kent, H.M, Edeling, M.A, Evans, P.R, Duden, R, Owen, D.J.
登録日2012-10-17
公開日2012-12-12
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.782 Å)
主引用文献Molecular Basis for Recognition of Dilysine Trafficking Motifs by Copi.
Dev.Cell, 23, 2012

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