Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1158 件

6MFL
DownloadVisualize
BU of 6mfl by Molmil
Structure of siderophore binding protein BauB bound to a complex between two molecules of acinetobactin and ferric iron.
分子名称: 1,2-ETHANEDIOL, FE (III) ION, Siderophore Binding Protein BauB, ...
著者Gulick, A.M, Bailey, D.C, Wencewicz, T.A.
登録日2018-09-11
公開日2018-11-21
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of the Siderophore Binding Protein BauB Bound to an Unusual 2:1 Complex Between Acinetobactin and Ferric Iron.
Biochemistry, 57, 2018
6MCW
DownloadVisualize
BU of 6mcw by Molmil
Crystal structure of the P450 domain of the CYP51-ferredoxin fusion protein from Methylococcus capsulatus, complex with the detergent Anapoe-X-114
分子名称: 23-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]-3,6,9,12,15,18,21-heptaoxatricosan-1-ol, Cytochrome P450 51, PROTOPORPHYRIN IX CONTAINING FE
著者Hargrove, T, Wawrzak, Z, Lamb, D.C, Lepesheva, G.I.
登録日2018-09-02
公開日2019-07-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Concerning P450 evolution: Structural Analyses Support Bacterial Origin of Sterol 14 alpha-Demethylases.
Mol.Biol.Evol., 2020
8TC3
DownloadVisualize
BU of 8tc3 by Molmil
CryoEM structure of nucleotide-free form of the nitrogenase iron protein from A. vinelandii
分子名称: IRON/SULFUR CLUSTER, Nitrogenase iron protein,Fluorescent protein plum
著者Warmack, R.A, Rees, D.C.
登録日2023-06-29
公開日2024-04-17
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Anaerobic cryoEM protocols for air-sensitive nitrogenase proteins.
Nat Protoc, 19, 2024
8UMC
DownloadVisualize
BU of 8umc by Molmil
Deinococcus aerius TR0125 C-glucosyl deglycosidase (CGD), cryo-EM
分子名称: DUF6379 domain-containing protein, MANGANESE (II) ION, Xylose isomerase-like TIM barrel domain-containing protein
著者Furlanetto, V, Kalyani, D.C, Kostelac, A, Haltrich, D, Hallberg, B.M, Divne, C.
登録日2023-10-17
公開日2024-05-29
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural and Functional Characterization of a Gene Cluster Responsible for Deglycosylation of C-glucosyl Flavonoids and Xanthonoids by Deinococcus aerius.
J.Mol.Biol., 436, 2024
8TQP
DownloadVisualize
BU of 8tqp by Molmil
HIV-CA Disulfide linked Hexamer bound to Quinazolin-4-one Scaffold inhibitor
分子名称: 2-[4-(4-aminobenzene-1-sulfonyl)-2-oxopiperazin-1-yl]-N-{(1R)-2-(3,5-difluorophenyl)-1-[3-(4-methoxyphenyl)-4-oxo-3,4-dihydroquinazolin-2-yl]ethyl}acetamide, Gag polyprotein
著者Goldstone, D.C, Barnett, M.J, Taka, J.R.H.
登録日2023-08-08
公開日2023-12-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Discovery, Crystallographic Studies, and Mechanistic Investigations of Novel Phenylalanine Derivatives Bearing a Quinazolin-4-one Scaffold as Potent HIV Capsid Modulators.
J.Med.Chem., 66, 2023
8TOV
DownloadVisualize
BU of 8tov by Molmil
HIV-CA Disulfide linked Hexamer bound to Quinazolin-4-one Scaffold inhibitor
分子名称: 2-[4-(4-aminobenzene-1-sulfonyl)-2-oxopiperazin-1-yl]-N-[(1R)-2-(3,5-difluorophenyl)-1-{3-[4-(morpholine-4-sulfonyl)phenyl]-4-oxo-3,4-dihydroquinazolin-2-yl}ethyl]acetamide, Matrix protein p17
著者Goldstone, D.C, Barnett, M.J, Taka, J.R.H.
登録日2023-08-04
公開日2023-12-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Discovery, Crystallographic Studies, and Mechanistic Investigations of Novel Phenylalanine Derivatives Bearing a Quinazolin-4-one Scaffold as Potent HIV Capsid Modulators.
J.Med.Chem., 66, 2023
8OZD
DownloadVisualize
BU of 8ozd by Molmil
cryoEM structure of SPARTA complex dimer-3
分子名称: DNA (16-MER), Piwi domain-containing protein, RNA (18-MER), ...
著者Ekundayo, B, Ni, D.C, Lu, X.H, Stahlberg, H.
登録日2023-05-09
公開日2023-08-16
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (3.89 Å)
主引用文献Activation mechanism of a short argonaute-TIR prokaryotic immune system.
Sci Adv, 9, 2023
9CEQ
DownloadVisualize
BU of 9ceq by Molmil
Lanthanide Binding Tag complex LBT3-NH2:La3+
分子名称: LANTHANUM (III) ION, Lanthanide Binding Tag Peptide
著者Kt, S, Messinger, R.J, Favaro, D.C.
登録日2024-06-27
公開日2024-07-17
実験手法SOLUTION NMR
主引用文献Role of Water in the Selective Complexation of Rare Earth Elements by Lanthanide Binding Tag Peptides
To Be Published
9BHW
DownloadVisualize
BU of 9bhw by Molmil
Septin Tetrameric Complex SEPT7/SEPT9 of Ciona intestinalis by Cryo-EM
分子名称: CiSeptin-7, GUANOSINE-5'-DIPHOSPHATE, Neuronal-specific septin-3
著者Mendonca, D.C, Pereira, H.M, Garratt, R.C.
登録日2024-04-22
公開日2024-07-10
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.72 Å)
主引用文献Structural Insights into Ciona intestinalis Septins: Complexes Suggest a Mechanism for Nucleotide-dependent Interfacial Cross-talk.
J.Mol.Biol., 436, 2024
9BHT
DownloadVisualize
BU of 9bht by Molmil
Septin Hexameric Complex SEPT2/SEPT6/SEPT7 of Ciona intestinalis by Cryo-EM
分子名称: CiSeptin-2, CiSeptin-6, CiSeptin-7, ...
著者Mendonca, D.C, Pereira, H.M, Garratt, R.C.
登録日2024-04-22
公開日2024-07-10
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Structural Insights into Ciona intestinalis Septins: Complexes Suggest a Mechanism for Nucleotide-dependent Interfacial Cross-talk.
J.Mol.Biol., 436, 2024
8OZC
DownloadVisualize
BU of 8ozc by Molmil
cryoEM structure of SPARTA complex heterodimer apo
分子名称: Piwi domain-containing protein, TIR domain-containing protein
著者Ekundayo, B, Ni, D.C, Lu, X.H, Stahlberg, H.
登録日2023-05-09
公開日2023-08-16
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Activation mechanism of a short argonaute-TIR prokaryotic immune system.
Sci Adv, 9, 2023
4YL6
DownloadVisualize
BU of 4yl6 by Molmil
Crystal structure of truncated cerebral cavernous malformation 2 C-terminal adaptor domain in complex with an internal helix of mitogen-activated protein kinase kinase kinase 3
分子名称: Malcavernin, Mitogen-activated protein kinase kinase kinase 3
著者Ding, J, Wang, X, Wang, D.C.
登録日2015-03-05
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Insights into the Molecular Recognition between Cerebral Cavernous Malformation 2 and Mitogen-Activated Protein Kinase Kinase Kinase 3
Structure, 23, 2015
4YFN
DownloadVisualize
BU of 4yfn by Molmil
Escherichia coli RNA polymerase in complex with squaramide compound 14 (N-[3,4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-1-yl)cyclobut-1-en-1-yl]-3,5-dimethyl-1,2-oxazole-4-sulfonamide)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Molodtsov, V, Fleming, P.R, Eyermann, C.J, Ferguson, A.D, Foulk, M.A, McKinney, D.C, Masse, C.E, Buurman, E.T, Murakami, K.S.
登録日2015-02-25
公開日2015-03-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.817 Å)
主引用文献X-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein.
J.Med.Chem., 58, 2015
4Z7M
DownloadVisualize
BU of 4z7m by Molmil
Novel Inhibitors of Bacterial Methionine Aminopeptidase with Broad-Spectrum Biochemical Activity
分子名称: MANGANESE (II) ION, Methionine aminopeptidase, N~2~-[(3,5-difluorophenyl)acetyl]-N-[(3S,7R)-1-methyl-2-oxo-7-phenyl-2,3,4,7-tetrahydro-1H-azepin-3-yl]-L-alaninamide
著者Rose, J.A, Lahiri, S.D, McKinney, D.C, Albert, R, Morningstar, M, Shapiro, A.B, Fisher, S.F, Fleming, P.R.
登録日2015-04-07
公開日2016-04-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Novel Inhibitors of Bacterial Methionine Aminopeptidase with Broad-Spectrum Biochemical Activity
To be Published
4ZTC
DownloadVisualize
BU of 4ztc by Molmil
PglE Aminotransferase in complex with External Aldimine, Mutant K184A
分子名称: Aminotransferase homolog, [(2R,3R,4R,5S,6R)-3-acetamido-6-methyl-5-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-oxan-2-yl] [[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate
著者Riegert, A.S, Thoden, J.B, Young, N.M, Watson, D.C, Holden, H.M.
登録日2015-05-14
公開日2015-07-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the external aldimine form of PglE, an aminotransferase required for N,N'-diacetylbacillosamine biosynthesis.
Protein Sci., 24, 2015
6QOZ
DownloadVisualize
BU of 6qoz by Molmil
CryoEM reconstruction of Cowpea Mosaic Virus (CPMV) bound to an Affimer reagent
分子名称: Affimer binding protein, Cowpea mosaic virus large subunit, RNA2 polyprotein
著者Hesketh, E.L, Tiede, C, Adamson, H, Adams, T.L, Byrne, M.J, Meshcheriakova, Y, Lomonossoff, G.P, Kruse, I, McPherson, M.J, Tomlinson, D.C, Ranson, N.A.
登録日2019-02-13
公開日2019-12-18
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Affimer reagents as tools in diagnosing plant virus diseases.
Sci Rep, 9, 2019
4YKC
DownloadVisualize
BU of 4ykc by Molmil
Crystal structure of cerebral cavernous malformation 2 C-terminal adaptor domain
分子名称: Malcavernin
著者Ding, J, Wang, X, Wang, D.C.
登録日2015-03-04
公開日2015-06-03
最終更新日2015-06-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural Insights into the Molecular Recognition between Cerebral Cavernous Malformation 2 and Mitogen-Activated Protein Kinase Kinase Kinase 3
Structure, 23, 2015
4YKD
DownloadVisualize
BU of 4ykd by Molmil
Crystal structure of truncated cerebral cavernous malformation 2 C-terminal adaptor domain
分子名称: Malcavernin
著者Ding, J, Wang, X, Wang, D.C.
登録日2015-03-04
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.932 Å)
主引用文献Structural Insights into the Molecular Recognition between Cerebral Cavernous Malformation 2 and Mitogen-Activated Protein Kinase Kinase Kinase 3
Structure, 23, 2015
4YFX
DownloadVisualize
BU of 4yfx by Molmil
Escherichia coli RNA polymerase in complex with Myxopyronin B
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Molodtsov, V, Fleming, P.R, Eyermann, C.J, Ferguson, A.D, Foulk, M.A, McKinney, D.C, Masse, C.E, Buurman, E.T, Murakami, K.S.
登録日2015-02-25
公開日2015-03-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.844 Å)
主引用文献X-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein.
J.Med.Chem., 58, 2015
4YFK
DownloadVisualize
BU of 4yfk by Molmil
Escherichia coli RNA polymerase in complex with squaramide compound 8.
分子名称: 3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Molodtsov, V, Fleming, P.R, Eyermann, C.J, Ferguson, A.D, Foulk, M.A, McKinney, D.C, Masse, C.E, Buurman, E.T, Murakami, K.S.
登録日2015-02-25
公開日2015-03-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.571 Å)
主引用文献X-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein.
J.Med.Chem., 58, 2015
5A0O
DownloadVisualize
BU of 5a0o by Molmil
adhiron raised against p300
分子名称: ADHIRON
著者Kyle, H.F, Wickson, K.F, Stott, J, Burslem, G.M, Breeze, A.L, Tiede, C, Tomlinson, D.C, Warriner, S.L, Nelson, A, Wilson, A.J, Edwards, T.A.
登録日2015-04-21
公開日2015-07-15
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Exploration of the Hif-1Alpha.P300 Interface Using Peptide and Adhiron Phage Display Technologies
Mol.Biosyst., 11, 2015
4ZRZ
DownloadVisualize
BU of 4zrz by Molmil
PlyCB mutant R66E
分子名称: PlyCB
著者Gallagher, D.T, Nelson, D.C, Shen, Y.
登録日2015-05-12
公開日2016-09-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献A bacteriophage endolysin that eliminates intracellular streptococci.
Elife, 5, 2016
4YAH
DownloadVisualize
BU of 4yah by Molmil
Crystal Structure of the Methionine Binding Protein, MetQ
分子名称: D-methionine-binding lipoprotein MetQ, METHIONINE
著者Lai, J.Y, Kadaba, N.S, Kaiser, J.T, Rees, D.C.
登録日2015-02-17
公開日2015-04-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex.
Biol.Chem., 396, 2015
5BNM
DownloadVisualize
BU of 5bnm by Molmil
E. coli FabH with Small Molecule Inhibitor 1
分子名称: 3-oxoacyl-[acyl-carrier-protein] synthase 3, N-{[3'-(hydroxymethyl)biphenyl-4-yl]methyl}benzenesulfonamide, SULFATE ION, ...
著者Kazmirski, S.L, McKinney, D.C.
登録日2015-05-26
公開日2016-05-18
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Antibacterial FabH Inhibitors with Mode of Action Validated in Haemophilus influenzae by in Vitro Resistance Mutation Mapping.
Acs Infect Dis., 2, 2016
5AO5
DownloadVisualize
BU of 5ao5 by Molmil
Endo180 D1-4, monoclinic form
分子名称: C-TYPE MANNOSE RECEPTOR 2, SODIUM ION, SULFATE ION
著者Paracuellos, P, Briggs, D.C, Carafoli, F, Loncar, T, Hohenester, E.
登録日2015-09-09
公開日2015-10-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Insights Into Collagen Uptake by C-Type Mannose Receptors from the Crystal Structure of Endo180 Domains 1-4.
Structure, 23, 2015

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon