Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1151 results

2KMS
DownloadVisualize
BU of 2kms by Molmil
Combined high- and low-resolution techniques reveal compact structure in central portion of factor H despite long inter-modular linkers
Descriptor: Complement factor H
Authors:Schmidt, C.Q, Herbert, A.P, Guariento, M, Mertens, H.D.T, Soares, D.C, Uhrin, D, Rowe, A.J, Svergun, D.I, Barlow, P.N.
Deposit date:2009-08-04
Release date:2009-11-03
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:The Central Portion of Factor H (Modules 10-15) Is Compact and Contains a Structurally Deviant CCP Module
J.Mol.Biol., 395, 2010
6BG3
DownloadVisualize
BU of 6bg3 by Molmil
Structure of (3S,4S)-1-benzyl-4-(3-(3-(trifluoromethyl)phenyl)ureido)piperidin-3-yl acetate bound to DCN1
Descriptor: Endolysin, DCN1-like protein 1 chimera, N-{(3S,4S)-1-benzyl-3-[(1S)-1-hydroxyethoxy]piperidin-4-yl}-N'-[3-(trifluoromethyl)phenyl]urea
Authors:Guy, R.K, Schulman, B.A, Scott, D.C, Hammill, J.T.
Deposit date:2017-10-27
Release date:2018-09-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Piperidinyl Ureas Chemically Control Defective in Cullin Neddylation 1 (DCN1)-Mediated Cullin Neddylation.
J. Med. Chem., 61, 2018
6BIQ
DownloadVisualize
BU of 6biq by Molmil
Structure of NlpC2 from Trichomonas vaginalis
Descriptor: Clan CA, family C40, NlpC/P60 superfamily cysteine peptidase
Authors:Pinheiro, J, Simoes-Barbosa, A, Goldstone, D.C.
Deposit date:2017-11-02
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The ProtozoanTrichomonas vaginalisTargets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases.
Mbio, 9, 2018
6BGH
DownloadVisualize
BU of 6bgh by Molmil
Solution NMR structure of Brd3 ET domain bound to Brg1 peptide
Descriptor: Brd3_ET, Bromodomain-containing protein 3
Authors:Szyszka, T.N, Wai, D.C, Mackay, J.P.
Deposit date:2017-10-28
Release date:2018-03-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The BRD3 ET domain recognizes a short peptide motif through a mechanism that is conserved across chromatin remodelers and transcriptional regulators.
J.Biol.Chem., 293, 2018
6BIO
DownloadVisualize
BU of 6bio by Molmil
Structure of NlpC1 from Trichomonas vaginalis
Descriptor: Clan CA, family C40, NlpC/P60 superfamily cysteine peptidase
Authors:Pinheiro, J, Simoes-Barbosa, A, Goldstone, D.C.
Deposit date:2017-11-02
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The ProtozoanTrichomonas vaginalisTargets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases.
Mbio, 9, 2018
6BGG
DownloadVisualize
BU of 6bgg by Molmil
Solution NMR structures of the BRD3 ET domain in complex with a CHD4 peptide
Descriptor: Bromodomain-containing protein 3, CHD4
Authors:Wai, D.C.C, Szyszka, T.N, Campbell, A.E, Kwong, C, Wilkinson-White, L, Silva, A.P.G, Low, J.K.K, Kwan, A.H, Gamsjaeger, R, Lu, B, Vakoc, C.R, Blobel, G.A, Mackay, J.P.
Deposit date:2017-10-28
Release date:2018-03-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The BRD3 ET domain recognizes a short peptide motif through a mechanism that is conserved across chromatin remodelers and transcriptional regulators.
J. Biol. Chem., 293, 2018
2M1M
DownloadVisualize
BU of 2m1m by Molmil
Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response
Descriptor: Auxin-induced protein IAA4
Authors:Kovermann, M, Dinesh, D.C, Gopalswamy, M, Abel, S, Balbach, J.
Deposit date:2012-12-03
Release date:2013-12-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response.
Proc.Natl.Acad.Sci.USA, 112, 2015
6BO1
DownloadVisualize
BU of 6bo1 by Molmil
Mono-adduct formed after 3 days in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL
Descriptor: Lysozyme C, SODIUM ION, dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl)ruthenium
Authors:Sullivan, M.P, Hartinger, C.G, Goldstone, D.C.
Deposit date:2017-11-17
Release date:2018-05-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Unexpected arene ligand exchange results in the oxidation of an organoruthenium anticancer agent: the first X-ray structure of a protein-Ru(carbene) adduct.
Chem. Commun. (Camb.), 54, 2018
1AIJ
DownloadVisualize
BU of 1aij by Molmil
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-NEUTRAL DQAQB STATE
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (II) ION, ...
Authors:Stowell, M.H.B, Mcphillips, T.M, Soltis, S.M, Rees, D.C, Abresch, E, Feher, G.
Deposit date:1997-04-18
Release date:1997-10-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Light-induced structural changes in photosynthetic reaction center: implications for mechanism of electron-proton transfer.
Science, 276, 1997
6CYM
DownloadVisualize
BU of 6cym by Molmil
Reversible Covalent Direct Thrombin Inhibitors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-methoxybenzoic acid, Prothrombin, ...
Authors:Sivaraja, M, Williams, D.C.
Deposit date:2018-04-06
Release date:2018-05-09
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Reversible covalent direct thrombin inhibitors.
PLoS ONE, 13, 2018
6CVA
DownloadVisualize
BU of 6cva by Molmil
Crystal structure of the N. meningitides methionine-binding protein in its substrate-free conformation
Descriptor: Lipoprotein
Authors:Nguyen, P.T, Lai, J.Y, Kaiser, J.T, Rees, D.C.
Deposit date:2018-03-27
Release date:2019-04-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.559 Å)
Cite:Structures of the Neisseria meningitides methionine-binding protein MetQ in substrate-free form and bound to l- and d-methionine isomers.
Protein Sci., 28, 2019
6CVL
DownloadVisualize
BU of 6cvl by Molmil
Crystal structure of the Escherichia coli ATPgS-bound MetNI methionine ABC transporter in complex with its MetQ binding protein
Descriptor: IODIDE ION, MERCURY (II) ION, MetI transmembrane subunit, ...
Authors:Nguyen, P.T, Kaiser, J.T, Rees, D.C.
Deposit date:2018-03-28
Release date:2018-11-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.953 Å)
Cite:Noncanonical role for the binding protein in substrate uptake by the MetNI methionine ATP Binding Cassette (ABC) transporter.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BO2
DownloadVisualize
BU of 6bo2 by Molmil
Adducts formed after 1 month in the reaction of dichlorido(1,3-dimethylbenzimidazol-2-ylidene)(eta6-p-cymene)ruthenium(II) with HEWL
Descriptor: CHLORIDE ION, Lysozyme C, RUTHENIUM ION, ...
Authors:Sullivan, M.P, Hartinger, C.G, Goldstone, D.C.
Deposit date:2017-11-17
Release date:2018-05-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Unexpected arene ligand exchange results in the oxidation of an organoruthenium anticancer agent: the first X-ray structure of a protein-Ru(carbene) adduct.
Chem. Commun. (Camb.), 54, 2018
2NZ5
DownloadVisualize
BU of 2nz5 by Molmil
Structure and Function Studies of Cytochrome P450 158A1 from Streptomyces coelicolor A3(2)
Descriptor: Cytochrome P450 CYP158A1, PROTOPORPHYRIN IX CONTAINING FE, naphthalene-1,2,4,5,7-pentol
Authors:Zhao, B, Lamb, D.C, Kelly, S.L, Waterman, M.R.
Deposit date:2006-11-22
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Different binding modes of two flaviolin substrate molecules in cytochrome P450 158A1 (CYP158A1) compared to CYP158A2.
Biochemistry, 46, 2007
6DEW
DownloadVisualize
BU of 6dew by Molmil
Structure of human COQ9 protein with bound isoprene.
Descriptor: (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol, (2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol, (2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol, ...
Authors:Bingman, C.A, Lohman, D.C, Smith, R.W, Pagliarini, D.J.
Deposit date:2018-05-13
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis.
Mol.Cell, 73, 2019
2NIP
DownloadVisualize
BU of 2nip by Molmil
NITROGENASE IRON PROTEIN FROM AZOTOBACTER VINELANDII
Descriptor: IRON/SULFUR CLUSTER, NITROGENASE IRON PROTEIN
Authors:Komiya, H, Georgiadis, M.M, Chakrabarti, P, Woo, D, Kornuc, J.J, Rees, D.C.
Deposit date:1998-05-11
Release date:1998-11-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conformational variability in structures of the nitrogenase iron proteins from Azotobacter vinelandii and Clostridium pasteurianum.
J.Mol.Biol., 280, 1998
2NQ2
DownloadVisualize
BU of 2nq2 by Molmil
An inward-facing conformation of a putative metal-chelate type ABC transporter.
Descriptor: Hypothetical ABC transporter ATP-binding protein HI1470, Hypothetical ABC transporter permease protein HI1471
Authors:Pinkett, H.P, Lee, A.T, Lum, P, Locher, K.P, Rees, D.C.
Deposit date:2006-10-30
Release date:2007-01-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:An inward-facing conformation of a putative metal-chelate-type ABC transporter.
Science, 315, 2007
6CTD
DownloadVisualize
BU of 6ctd by Molmil
C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Channel of Large Conductance MscL
Descriptor: GOLD ION, Large-conductance mechanosensitive channel
Authors:Herrera, N, Rees, D.C.
Deposit date:2018-03-22
Release date:2018-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (5.8 Å)
Cite:Elucidating a role for the cytoplasmic domain in the Mycobacterium tuberculosis mechanosensitive channel of large conductance.
Sci Rep, 8, 2018
6CN7
DownloadVisualize
BU of 6cn7 by Molmil
The structure of aerobactin synthetase IucC from a hypervirulent pathotype of Klebsiella pneumoniae
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Aerobactin synthase IucC
Authors:Bailey, D.C, Rice, M.R, Gulick, A.M.
Deposit date:2018-03-07
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and functional delineation of aerobactin biosynthesis in hypervirulentKlebsiella pneumoniae.
J. Biol. Chem., 293, 2018
6DTC
DownloadVisualize
BU of 6dtc by Molmil
Dihydrofolate Reductase (DHFR) of Aspergillus flavus in complex with a small molecule inhibitor
Descriptor: (3R)-3-methyl-4-[3-(1H-tetrazol-5-yl)phenoxy]-2,3-dihydrofuro[2,3-f]quinazoline-7,9-diamine, Dihydrofolate reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Bensen, D.C, Fortier, J.M, Akers-Rodriguez, S, Tari, L.W.
Deposit date:2018-06-15
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Prospecting for broad-spectrum inhibitors of fungal dihydrofolate reductase using a structure guided approach.
To be published
6C42
DownloadVisualize
BU of 6c42 by Molmil
Estrogen Receptor Alpha Ligand Binding Domain in Complex with OP1156
Descriptor: (2R,3S,4R)-3-(4-hydroxyphenyl)-4-methyl-2-{4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}-3,4-dihydro-2H-1-benzopyran-7-ol, Estrogen receptor
Authors:Fanning, S.W, Hodges-Gallager, L, Myles, D.C, Sun, R, Fowler, C.E, Green, B.D, Harmon, C.L, Greene, G.L, Kushner, P.J.
Deposit date:2018-01-11
Release date:2018-02-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Specific stereochemistry of OP-1074 disrupts estrogen receptor alpha helix 12 and confers pure antiestrogenic activity.
Nat Commun, 9, 2018
6BIM
DownloadVisualize
BU of 6bim by Molmil
Structure of NlpC1 from Trichomonas vaginalis
Descriptor: Clan CA, family C40, NlpC/P60 superfamily cysteine peptidase
Authors:Pinheiro, J, Simoes-Barbosa, A, Goldstone, D.C.
Deposit date:2017-11-02
Release date:2018-11-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.547 Å)
Cite:The ProtozoanTrichomonas vaginalisTargets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases.
Mbio, 9, 2018
2NP8
DownloadVisualize
BU of 2np8 by Molmil
Structural Basis for the Inhibition of Aurora A Kinase by a Novel Class of High Affinity Disubstituted Pyrimidine Inhibitors
Descriptor: N-{3-[(4-{[3-(TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-2-YL)AMINO]PHENYL}CYCLOPROPANECARBOXAMIDE, SULFATE ION, Serine/threonine-protein kinase 6
Authors:Tari, L.W, Hoffman, I.D, Bensen, D.C, Hunter, M.J, Nix, J, Nelson, K.J, McRee, D.E, Swanson, R.V.
Deposit date:2006-10-26
Release date:2006-12-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for the inhibition of Aurora A kinase by a novel class of high affinity disubstituted pyrimidine inhibitors.
Bioorg.Med.Chem.Lett., 17, 2007
2ONG
DownloadVisualize
BU of 2ong by Molmil
Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).
Descriptor: (1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL TRIHYDROGEN DIPHOSPHATE, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4S-limonene synthase, ...
Authors:Hyatt, D.C, Youn, B, Croteau, R, Kang, C.
Deposit date:2007-01-23
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of limonene synthase, a simple model for terpenoid cyclase catalysis.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ONS
DownloadVisualize
BU of 2ons by Molmil
Crystal structure of A. fulgidus periplasmic binding protein ModA with bound tungstate
Descriptor: MAGNESIUM ION, NITRATE ION, TUNGSTATE(VI)ION, ...
Authors:Hollenstein, K, Frei, D.C, Locher, K.P.
Deposit date:2007-01-24
Release date:2007-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of an ABC transporter in complex with its binding protein.
Nature, 446, 2007

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon