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PDB: 53012 results

1GJE
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Peptide Antagonist of IGFBP-1, Minimized Average Structure
Descriptor: IGFBP-1 antagonist
Authors:Lowman, H.B, Chen, Y.M, Skelton, N.J, Mortensen, D.L, Tomlinson, E.E, Sadick, M.D, Robinson, I.C, Clark, R.G.
Deposit date:2001-05-11
Release date:2001-05-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure-function analysis of a phage display-derived peptide that binds to insulin-like growth factor binding protein 1.
Biochemistry, 40, 2001
3T67
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Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: CATECHOL, FE (III) ION, GLYCEROL, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2011-07-28
Release date:2012-08-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
2EI0
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BU of 2ei0 by Molmil
Anaerobic Crystal Structure Analysis of 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexed with 3,4-dihydroxybiphenyl
Descriptor: 1,1'-BIPHENYL-3,4-DIOL, 1,2-dihydroxynaphthalene dioxygenase, FE (II) ION, ...
Authors:Neau, D.B, Kelker, M.S, Colbert, C.L, Bolin, J.T.
Deposit date:2007-03-10
Release date:2008-02-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural explanation for success and failure in the enzymatic ring-cleavage of 3,4 dihydroxybiphenyl and related PCB metabolites
To be Published
1G27
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CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE DEFORMYLASE COMPLEXED WITH THE INHIBITOR BB-3497
Descriptor: 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE, NICKEL (II) ION, POLYPEPTIDE DEFORMYLASE
Authors:Clements, J.M, Beckett, P, Brown, A, Catlin, C, Lobell, M, Palan, S, Thomas, W, Whittaker, M, Baker, P.J, Rodgers, H.F, Barynin, V, Rice, D.W, Hunter, M.G.
Deposit date:2000-10-17
Release date:2001-10-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor.
Antimicrob.Agents Chemother., 45, 2001
1G5S
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CRYSTAL STRUCTURE OF HUMAN CYCLIN DEPENDENT KINASE 2 (CDK2) IN COMPLEX WITH THE INHIBITOR H717
Descriptor: 2-[TRANS-(4-AMINOCYCLOHEXYL)AMINO]-6-(BENZYL-AMINO)-9-CYCLOPENTYLPURINE, CELL DIVISION PROTEIN KINASE 2
Authors:Dreyer, M.K, Borcherding, D.R, Dumont, J.A, Peet, N.P, Tsay, J.T, Wright, P.S, Bitonti, A.J, Shen, J, Kim, S.-H.
Deposit date:2000-11-02
Release date:2001-11-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717.
J.Med.Chem., 44, 2001
1G5Z
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CRYSTAL STRUCTURE OF LYME DISEASE ANTIGEN OUTER SURFACE PROTEIN C (OSPC) FROM BORRELIA BURGDORFERI STRAIN N40
Descriptor: OUTER SURFACE PROTEIN C
Authors:Eicken, C, Sharma, V, Klabunde, T, Owens, R.T, Pikas, D.S, Hook, M, Sacchettini, J.C.
Deposit date:2000-11-02
Release date:2001-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystal structure of Lyme disease antigen outer surface protein C from Borrelia burgdorferi.
J.Biol.Chem., 276, 2001
6DAU
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Crystal structure of E33Q and E41Q mutant forms of the spermidine/spermine N-acetyltransferase SpeG from Vibrio cholerae
Descriptor: GLYCEROL, Spermidine N1-acetyltransferase
Authors:Filippova, E.V, Minasov, G, Beahan, A, Kulyavtsev, P, Tan, L, Tran, D, Kuhn, M.L, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-05-02
Release date:2018-07-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Crystal structure of E33Q and E41Q mutant forms of the spermidine/spermine N-acetyltransferase SpeG from Vibrio cholerae.
To be Published
2PFE
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BU of 2pfe by Molmil
Crystal Structure of Thermobifida fusca Protease A (TFPA)
Descriptor: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE, Alkaline serine protease, GLYCEROL, ...
Authors:Kelch, B.A, Agard, D.A.
Deposit date:2007-04-04
Release date:2007-07-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.436 Å)
Cite:Mesophile versus Thermophile: Insights Into the Structural Mechanisms of Kinetic Stability
J.Mol.Biol., 370, 2007
2PPO
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BU of 2ppo by Molmil
Crystal structure of E60A mutant of FKBP12
Descriptor: FK506-binding protein 1A
Authors:Szep, S, Park, S, VanDuyne, G.D, Saven, J.G.
Deposit date:2007-04-30
Release date:2008-05-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Structural coupling between FKBP12 and buried water.
Proteins, 74, 2009
2PTF
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BU of 2ptf by Molmil
Crystal structure of protein MTH_863 from Methanobacterium thermoautotrophicum bound to FMN
Descriptor: FLAVIN MONONUCLEOTIDE, Uncharacterized protein MTH_863
Authors:Bonanno, J.B, Rutter, M, Bain, K.T, Iizuka, M, Ozyurt, S, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-05-08
Release date:2007-05-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of protein MTH_863 from Methanobacterium thermoautotrophicum bound to FMN.
To be Published
6D9F
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Protein 60 with aldehyde deformylating oxidase activity from Kitasatospora setae
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Putative VlmB homolog, ...
Authors:Arenas, R, Wilson, D.K, Mak, W.S, Siegel, J.B.
Deposit date:2018-04-28
Release date:2019-05-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Discovery, Design, and Structural Characterization of Alkane-Producing Enzymes across the Ferritin-like Superfamily.
Biochemistry, 59, 2020
2PP8
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Formate bound to oxidized wild type AfNiR
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ...
Authors:Tocheva, E.I, Eltis, L.D, Murphy, M.E.P.
Deposit date:2007-04-28
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules.
Biochemistry, 47, 2008
6DTK
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BU of 6dtk by Molmil
Heterodimers of FALS mutant SOD enzyme
Descriptor: COPPER (II) ION, MALONATE ION, Superoxide dismutase C111S/D83S-C111S HETERODIMER, ...
Authors:Streltsov, V.A, Nuttall, S.D, Ganio, K.E, Roberts, B.
Deposit date:2018-06-17
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of heterodimers of FALS mutant SOD enzyme
To Be Published
2PWZ
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Crystal structure of the apo form of E.Coli malate dehydrogenase
Descriptor: Malate dehydrogenase
Authors:Soderberg, C.A.G, Clarke, T.A, Richardson, D.J, Hemmings, A.M.
Deposit date:2007-05-14
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The X-ray crystal structure of the apo form of E.Coli malate dehydrogenase in space group C2
To be Published
1GA0
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BU of 1ga0 by Molmil
STRUCTURE OF THE E. CLOACAE GC1 BETA-LACTAMASE WITH A CEPHALOSPORIN SULFONE INHIBITOR
Descriptor: 3-(4-CARBAMOYL-1-CARBOXY-2-METHYLSULFONYL-BUTA-1,3-DIENYLAMINO)-INDOLIZINE-2-CARBOXYLIC ACID, BETA-LACTAMASE, GLYCEROL, ...
Authors:Crichlow, G.V, Nukaga, M, Buynak, J.D, Knox, J.R.
Deposit date:2000-11-28
Release date:2001-06-06
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Inhibition of class C beta-lactamases: structure of a reaction intermediate with a cephem sulfone.
Biochemistry, 40, 2001
3T3X
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1.57 A structure of Friedreich's ataxia frataxin variant R165C
Descriptor: Frataxin, mitochondrial, SULFATE ION
Authors:Bridwell-Rabb, J, Winn, A.M, Barondeau, D.P.
Deposit date:2011-07-25
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structure-Function Analysis of Friedreich's Ataxia Mutants Reveals Determinants of Frataxin Binding and Activation of the Fe-S Assembly Complex.
Biochemistry, 50, 2011
2PLL
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BU of 2pll by Molmil
Crystal structure of perdeuterated human arginase I
Descriptor: 2(S)-AMINO-6-BORONOHEXANOIC ACID, MANGANESE (II) ION, arginase-1
Authors:Di Costanzo, L, Moulin, M, Haertlein, M, Meilleur, F, Christianson, D.W.
Deposit date:2007-04-19
Release date:2007-08-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Expression, purification, assay, and crystal structure of perdeuterated human arginase I
Arch.Biochem.Biophys., 465, 2007
8RB5
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BU of 8rb5 by Molmil
Structure of the three-fold capsomer of the PNMA2 capsid
Descriptor: Paraneoplastic antigen Ma2 homolog
Authors:Erlendsson, S, Xu, J, Shepherd, J.D, Briggs, J.A.G.
Deposit date:2023-12-03
Release date:2024-02-14
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome.
Cell, 187, 2024
7M2Y
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Closed conformation of the Yeast wild-type gamma-TuRC
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Spindle pole body component 110, Spindle pole body component SPC97, ...
Authors:Brilot, A.F, Lyon, A.S, Zelter, A, Viswanath, S, Maxwell, A, MacCoss, M.J, Muller, E.G, Sali, A, Davis, T.N, Agard, D.A.
Deposit date:2021-03-17
Release date:2021-05-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:CM1-driven assembly and activation of yeast gamma-tubulin small complex underlies microtubule nucleation.
Elife, 10, 2021
7M2Z
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Monomeric single-particle reconstruction of the Yeast gamma-TuSC
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Spindle pole body component SPC97, Spindle pole body component SPC98, ...
Authors:Brilot, A.F, Lyon, A.S, Zelter, A, Viswanath, S, Maxwell, A, MacCoss, M.J, Muller, E.G, Sali, A, Davis, T.N, Agard, D.A.
Deposit date:2021-03-17
Release date:2021-05-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:CM1-driven assembly and activation of yeast gamma-tubulin small complex underlies microtubule nucleation.
Elife, 10, 2021
8RB3
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Structure of the PNMA2 capsid
Descriptor: Paraneoplastic antigen Ma2 homolog
Authors:Erlendsson, S, Xu, J, Shepherd, J.D, Briggs, J.A.G.
Deposit date:2023-12-02
Release date:2024-02-14
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome.
Cell, 187, 2024
8RB7
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Structure of the two-fold capsomer of the PNMA2 capsid
Descriptor: Paraneoplastic antigen Ma2 homolog
Authors:Erlendsson, S, Xu, J, Shepherd, J.D, Briggs, J.A.G.
Deposit date:2023-12-03
Release date:2024-02-14
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome.
Cell, 187, 2024
1G1H
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CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH A BIS-PHOSPHORYLATED PEPTIDE (ETD(PTR)(PTR)RKGGKGLL) FROM THE INSULIN RECEPTOR KINASE
Descriptor: BI-PHOSPHORYLATED PEPTIDE FROM THE INSULIN RECEPTOR KINASE, PROTEIN TYROSINE PHOSPHATASE 1B
Authors:Salmeen, A, Andersen, J.N, Myers, M.P, Tonks, N.K, Barford, D.
Deposit date:2000-10-11
Release date:2001-01-17
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis for the dephosphorylation of the activation segment of the insulin receptor by protein tyrosine phosphatase 1B.
Mol.Cell, 6, 2000
7M2X
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Open conformation of the Yeast wild-type gamma-TuRC
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Spindle pole body component 110, Spindle pole body component SPC97, ...
Authors:Brilot, A.F, Lyon, A.S, Zelter, A, Viswanath, S, Maxwell, A, MacCoss, M.J, Muller, E.G, Sali, A, Davis, T.N, Agard, D.A.
Deposit date:2021-03-17
Release date:2021-05-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:CM1-driven assembly and activation of yeast gamma-tubulin small complex underlies microtubule nucleation.
Elife, 10, 2021
1G2N
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BU of 1g2n by Molmil
CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE ULTRASPIRACLE PROTEIN USP, THE ORTHOLOG OF RXRS IN INSECTS
Descriptor: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE, ULTRASPIRACLE PROTEIN
Authors:Billas, I.M.L, Moulinier, L, Rochel, N, Moras, D, Structural Proteomics in Europe (SPINE)
Deposit date:2000-10-20
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of the ligand-binding domain of the ultraspiracle protein USP, the ortholog of retinoid X receptors in insects.
J.Biol.Chem., 276, 2001

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