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PDB: 56244 results

7MUV
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BU of 7muv by Molmil
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 3
Descriptor: DUF2807 domain-containing protein, DotC, DotD, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
7Y53
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BU of 7y53 by Molmil
The cryo-EM structure of human ERAD retro-translocation complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Derlin-1, Transitional endoplasmic reticulum ATPase
Authors:Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y.
Deposit date:2022-06-16
Release date:2023-10-18
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:The cryo-EM structure of the human ERAD retrotranslocation complex.
Sci Adv, 9, 2023
9B3G
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BU of 9b3g by Molmil
Human Notch-1 EGFs 21-23
Descriptor: BARIUM ION, Neurogenic locus notch homolog protein 1
Authors:Johnson, S, Sheppard, D, Handford, P.A, Lea, S.M.
Deposit date:2024-03-19
Release date:2024-10-16
Last modified:2024-12-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and functional studies of the EGF20-27 region reveal new features of the human Notch receptor important for optimal activation.
Structure, 32, 2024
8C70
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BU of 8c70 by Molmil
Pyrrolidine fragment 1 bound to endothiapepsin
Descriptor: (3~{R},4~{R})-4-[4-[(5-bromanylpyridin-3-yl)oxymethyl]-1,2,3-triazol-1-yl]pyrrolidin-3-ol, Endothiapepsin
Authors:Wiese, J.N, Buehrmann, M, Mueller, M.P, Rauh, D.
Deposit date:2023-01-12
Release date:2023-05-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Fragtory: Pharmacophore-Focused Design, Synthesis, and Evaluation of an sp 3 -Enriched Fragment Library.
J.Med.Chem., 66, 2023
7MUY
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BU of 7muy by Molmil
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 5
Descriptor: DUF2807 domain-containing protein, DotC, DotD, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
7Y4W
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BU of 7y4w by Molmil
The cryo-EM structure of human ERAD retro-translocation complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Derlin-1, Transitional endoplasmic reticulum ATPase
Authors:Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y.
Deposit date:2022-06-16
Release date:2023-10-18
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:The cryo-EM structure of the human ERAD retrotranslocation complex.
Sci Adv, 9, 2023
1J8E
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BU of 1j8e by Molmil
Crystal structure of ligand-binding repeat CR7 from LRP
Descriptor: CALCIUM ION, LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1
Authors:Simonovic, M, Dolmer, K, Huang, W, Strickland, D.K, Volz, K, Gettins, P.G.W.
Deposit date:2001-05-21
Release date:2001-12-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Calcium coordination and pH dependence of the calcium affinity of ligand-binding repeat CR7 from the LRP. Comparison with related domains from the LRP and the LDL receptor.
Biochemistry, 40, 2001
5HYG
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BU of 5hyg by Molmil
CmlI (peroxo bound state), arylamine oxygenase of chloramphenicol biosynthetic pathway
Descriptor: FE (III) ION, HYDROGEN PEROXIDE, L(+)-TARTARIC ACID, ...
Authors:Knoot, C.J, Lipscomb, J.D.
Deposit date:2016-02-01
Release date:2016-06-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of CmlI, the arylamine oxygenase from the chloramphenicol biosynthetic pathway.
J.Biol.Inorg.Chem., 21, 2016
7SCW
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BU of 7scw by Molmil
KRAS full length wild-type in complex with RGL1 Ras association domain
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Isoform 2B of GTPase KRas, MAGNESIUM ION, ...
Authors:Eves, B.J, Kuntz, D.A, Ikura, M, Marshall, C.B.
Deposit date:2021-09-29
Release date:2022-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of RGL1 RAS-Association Domain in Complex with KRAS and the Oncogenic G12V Mutant.
J.Mol.Biol., 434, 2022
5HIN
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BU of 5hin by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with 18L compound
Descriptor: ACETATE ION, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Huang, J, Wu, D, Lu, Q, Yao, X.
Deposit date:2016-01-12
Release date:2016-07-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of human dihydroorotate dehydrogenase (DHODH) with 18L at 1.60 A resolution
To Be Published
7YAX
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BU of 7yax by Molmil
HYDROXYNITRILE LYASE FROM THE MILLIPEDE,
Descriptor: CHLORIDE ION, Hydroxynitrile lyase, SULFATE ION
Authors:Chaikaew, S, Watanabe, Y, Zheng, D, Motojima, F, Asano, Y.
Deposit date:2022-06-28
Release date:2024-01-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure-Based Site-Directed Mutagenesis of Hydroxynitrile Lyase from Cyanogenic Millipede, Oxidus gracilis for Hydrocyanation and Henry Reactions.
Chembiochem, 25, 2024
7SC0
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BU of 7sc0 by Molmil
CryoEM structure of the Caveolin-1 8S complex
Descriptor: Caveolin-1
Authors:Porta, J.P, Ohi, M.D, Kenworthy, A.K, Karakas, E.
Deposit date:2021-09-26
Release date:2022-05-25
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular architecture of the human caveolin-1 complex.
Sci Adv, 8, 2022
7SCX
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BU of 7scx by Molmil
KRAS full-length G12V in complex with RGL1 Ras association domain
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Isoform 2B of GTPase KRas, MAGNESIUM ION, ...
Authors:Eves, B.J, Kuntz, D.A, Ikura, M, Marshall, C.B.
Deposit date:2021-09-29
Release date:2022-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structures of RGL1 RAS-Association Domain in Complex with KRAS and the Oncogenic G12V Mutant.
J.Mol.Biol., 434, 2022
5EAL
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BU of 5eal by Molmil
Crystal structure of human WDR5 in complex with compound 9h
Descriptor: 1,2-ETHANEDIOL, 3-methyl-~{N}-[2-(4-methylpiperazin-1-yl)-5-quinolin-3-yl-phenyl]benzamide, CHLORIDE ION, ...
Authors:DONG, A, DOMBROVSKI, L, SMIL, D, GETLIK, M, BOLSHAN, Y, WALKER, J.R, SENISTERRA, G, PODA, G, AL-AWAR, R, SCHAPIRA, M, VEDADI, M, Bountra, C, Edwards, A.M, Arrowsmith, C.H, BROWN, P.J, WU, H, Structural Genomics Consortium (SGC)
Deposit date:2015-10-16
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human WDR5 in complex with compound 9h
to be published
4WN9
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BU of 4wn9 by Molmil
Structure of the Nitrogenase MoFe Protein from Clostridium pasteurianum Pressurized with Xenon
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Morrison, C.N, Hoy, J.A, Rees, D.C.
Deposit date:2014-10-11
Release date:2015-03-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate Pathways in the Nitrogenase MoFe Protein by Experimental Identification of Small Molecule Binding Sites.
Biochemistry, 54, 2015
5E09
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BU of 5e09 by Molmil
Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
Descriptor: Cellulase
Authors:Zhang, H.J, Zhang, H.D.
Deposit date:2015-09-28
Release date:2016-10-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.347 Å)
Cite:Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
To Be Published
6TO8
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BU of 6to8 by Molmil
Neck of empty GTA particle computed with C12 symmetry
Descriptor: Adaptor protein Rcc01688, Portal protein Rcc01684
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
5HLD
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BU of 5hld by Molmil
E. coli PBP1b in complex with acyl-CENTA and moenomycin
Descriptor: (2S)-5-methylidene-2-{(1R)-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, MOENOMYCIN, Penicillin-binding protein 1B
Authors:King, D.T, Strynadka, N.C.J.
Deposit date:2016-01-14
Release date:2016-12-14
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Escherichia coli Penicillin-Binding Protein 1B: Structural Insights into Inhibition.
J. Biol. Chem., 2016
6TPG
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BU of 6tpg by Molmil
Crystal structure of the Orexin-2 receptor in complex with EMPA at 2.74 A resolution
Descriptor: N-ethyl-2-[(6-methoxypyridin-3-yl)-(2-methylphenyl)sulfonyl-amino]-N-(pyridin-3-ylmethyl)ethanamide, OLEIC ACID, Orexin receptor type 2,GlgA glycogen synthase,Hypocretin receptor-2, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-13
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.741 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
4WSP
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BU of 4wsp by Molmil
Racemic crystal structure of Rv1738 from Mycobacterium tuberculosis (Form-I)
Descriptor: CHLORIDE ION, protein DL-Rv1738
Authors:Bunker, R.D, Mandal, K, Kent, S.B.H, Baker, E.N.
Deposit date:2014-10-28
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A functional role of Rv1738 in Mycobacterium tuberculosis persistence suggested by racemic protein crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
6Q3Z
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BU of 6q3z by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with the inhibitor 16k
Descriptor: (7~{R})-2-[[2-ethoxy-4-(1-methylpiperidin-4-yl)phenyl]amino]-7-ethyl-5-methyl-8-[(4-methylthiophen-2-yl)methyl]-7~{H}-pteridin-6-one, 1,2-ETHANEDIOL, Bromodomain-containing protein 4
Authors:Heidenreich, D, Watts, E, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Knapp, S, Hoelder, S, Structural Genomics Consortium (SGC)
Deposit date:2018-12-04
Release date:2019-03-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Designing Dual Inhibitors of Anaplastic Lymphoma Kinase (ALK) and Bromodomain-4 (BRD4) by Tuning Kinase Selectivity.
J.Med.Chem., 62, 2019
5NSR
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BU of 5nsr by Molmil
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Glyde, R, Ye, F.Z, Darbari, V.C, Zhang, N, Buck, M, Zhang, X.D.
Deposit date:2017-04-26
Release date:2017-06-28
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation.
Mol. Cell, 67, 2017
9B52
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BU of 9b52 by Molmil
RhAAV4282 Empty Capsid
Descriptor: Capsid protein VP1
Authors:Dagotto, G, Jenni, S, Li, Z, Barouch, D.H.
Deposit date:2024-03-22
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Identification of a novel neutralization epitope in rhesus AAVs.
Mol Ther Methods Clin Dev, 32, 2024
3GW2
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BU of 3gw2 by Molmil
Crystal structure of possible transcriptional regulatory protein (fragment 1-100) from Mycobacterium bovis. Northeast Structural Genomics Consortium Target MbR242E.
Descriptor: Possible transcriptional regulatory arsR-family protein
Authors:Kuzin, A.P, Su, M, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-03-31
Release date:2009-04-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Northeast Structural Genomics Consortium Target MbR242E
To be published
9ARC
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BU of 9arc by Molmil
Crystal Structure of C0362 (TDE_0362 [TDE0362] resi 205-647)
Descriptor: Bacterial Ig-like domain protein C0362, POTASSIUM ION
Authors:Clark, N.D, Malkowski, M.G.
Deposit date:2024-02-23
Release date:2024-11-27
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:A bipartite bacterial virulence factor targets the complement system and neutrophil activation.
Embo J., 44, 2025

237423

數據於2025-06-11公開中

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