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PDB: 52974 results

5CYA
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BU of 5cya by Molmil
Crystal structure of Arl2 GTPase-activating protein tubulin cofactor C (TBCC)
Descriptor: SULFATE ION, Tubulin-specific chaperone C
Authors:Nithianantham, S, Le, S, Seto, E, Jia, W, Leary, J, Corbett, K.D, Moore, J.K, Al-Bassam, J.
Deposit date:2015-07-30
Release date:2015-08-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tubulin cofactors and Arl2 are cage-like chaperones that regulate the soluble alpha beta-tubulin pool for microtubule dynamics.
Elife, 4, 2015
5CYZ
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BU of 5cyz by Molmil
Structure of S. cerevisiae Hrr25:Mam1 complex, form 1
Descriptor: Casein kinase I homolog HRR25, Monopolin complex subunit MAM1, ZINC ION
Authors:Ye, Q, Corbett, K.D.
Deposit date:2015-07-31
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.841 Å)
Cite:Structure of the Saccharomyces cerevisiae Hrr25:Mam1 monopolin subcomplex reveals a novel kinase regulator.
Embo J., 35, 2016
1TKQ
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BU of 1tkq by Molmil
SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE IN THE PRESENCE OF CsCl
Descriptor: GRAMICIDIN A, MINI-GRAMICIDIN A, SUCCINIC ACID
Authors:Xie, X, Al-Momani, L, Bockelmann, D, Griesinger, C, Koert, U.
Deposit date:2004-06-09
Release date:2004-07-13
Last modified:2019-09-25
Method:SOLUTION NMR
Cite:An Asymmetric Ion Channel Derived from Gramicidin A. Synthesis, Function and NMR Structure.
FEBS J., 272, 2005
3WXY
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BU of 3wxy by Molmil
Crystal structure of CsyB complexed with CoA-SH
Descriptor: COENZYME A, Putative uncharacterized protein csyB
Authors:Mori, T, Yang, D, Matsui, T, Morita, H, Fujii, I, Abe, I.
Deposit date:2014-08-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:Structural basis for the formation of acylalkylpyrones from two beta-ketoacyl units by the fungal type III polyketide synthase CsyB.
J.Biol.Chem., 290, 2015
4R8H
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BU of 4r8h by Molmil
The role of protein-ligand contacts in allosteric regulation of the Escherichia coli Catabolite Activator Protein
Descriptor: 6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL, GLYCEROL, cAMP-activated global transcriptional regulator CRP
Authors:Townsend, P.D, Pohl, E, McLeish, T.C.B, Rodgers, T.L, Glover, L.C, Korhonen, H.J, Wilson, M.R, Hodgson, D.R.W, Cann, M.J.
Deposit date:2014-09-02
Release date:2015-07-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:The Role of Protein-Ligand Contacts in Allosteric Regulation of the Escherichia coli Catabolite Activator Protein.
J.Biol.Chem., 290, 2015
2II3
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BU of 2ii3 by Molmil
Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (E2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (BCKDC), Oxidized Coenzyme A-bound form
Descriptor: ACETATE ION, CHLORIDE ION, Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, ...
Authors:Kato, M, Wynn, R.M, Chuang, J.L, Brautigam, C.A, Custorio, M, Chuang, D.T.
Deposit date:2006-09-27
Release date:2006-12-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
Embo J., 25, 2006
5D82
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BU of 5d82 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y16(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
3E76
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BU of 3e76 by Molmil
Crystal structure of Wild-type GroEL with bound Thallium ions
Descriptor: 60 kDa chaperonin, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Kiser, P.D, Lorimer, G.H, Palczewski, K.
Deposit date:2008-08-17
Release date:2009-08-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.94 Å)
Cite:Use of thallium to identify monovalent cation binding sites in GroEL.
Acta Crystallogr.,Sect.F, 65, 2009
5D9C
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BU of 5d9c by Molmil
Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against Hg derivative data)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2015-08-18
Release date:2015-09-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
8HZC
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BU of 8hzc by Molmil
Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-2)
Descriptor: Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2023-01-08
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-2)
To Be Published
8HZB
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BU of 8hzb by Molmil
Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-1)
Descriptor: Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2023-01-08
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-1)
To Be Published
6PPH
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BU of 6pph by Molmil
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
Authors:Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H.
Deposit date:2019-07-06
Release date:2019-09-11
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV.
Cell, 178, 2019
3ZRJ
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BU of 3zrj by Molmil
Complex of ClpV N-domain with VipB peptide
Descriptor: 1,2-ETHANEDIOL, CLPB PROTEIN, VIPB
Authors:Lenherr, E.D, Kopp, J, Sinning, I.
Deposit date:2011-06-16
Release date:2011-07-06
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Molecular Basis for the Unique Role of the Aaa+ Chaperone Clpv in Type Vi Protein Secretion.
J.Biol.Chem., 286, 2011
5CTY
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BU of 5cty by Molmil
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-(pyridin-3-yl)-1,3-thiazol-5-yl]-2,7-dihydro-6H-pyrazolo[3,4-b]pyridin-6-one, CHLORIDE ION, ...
Authors:Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C, Mesleh, M, Cross, J.B, Zhang, J, Yang, Q, Lippa, B, Ryan, M.D.
Deposit date:2015-07-24
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fragment-based discovery of DNA gyrase inhibitors targeting the ATPase subunit of GyrB.
Bioorg.Med.Chem.Lett., 26, 2016
2VX8
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BU of 2vx8 by Molmil
Vamp7 longin domain Hrb peptide complex
Descriptor: CHLORIDE ION, NUCLEOPORIN-LIKE PROTEIN RIP, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7
Authors:Evans, P.R, Owen, D.J, Luzio, J.P.
Deposit date:2008-07-01
Release date:2008-09-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular Basis for the Sorting of the Snare Vamp7 Into Endocytic Clathrin-Coated Vesicles by the Arfgap Hrb.
Cell(Cambridge,Mass.), 134, 2008
136D
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BU of 136d by Molmil
SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor: DNA TRIPLEX
Authors:Radhakrishnan, I, Patel, D.J.
Deposit date:1993-08-30
Release date:1994-04-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure, 1, 1993
4II3
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BU of 4ii3 by Molmil
Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Olsen, S.K, Lima, C.D.
Deposit date:2012-12-19
Release date:2013-02-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer.
Mol.Cell, 49, 2013
3ECB
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BU of 3ecb by Molmil
Crystal structure of mouse H-2Dd in complex with peptide P18-I10 derived from human immunodeficiency virus envelope glycoprotein 120
Descriptor: 1,2-ETHANEDIOL, Beta-2 microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Natarajan, K, Wang, R, Margulies, D.H.
Deposit date:2008-08-29
Release date:2009-07-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Structural basis of the CD8alphabeta/MHC class i interaction: focused recognition orients CD8beta to a T cell proximal position
J.Immunol., 183, 2009
8HZS
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BU of 8hzs by Molmil
Formed alpha-synuclein fibrils after incubation with heparin for 3 days (Hep-remod-3)
Descriptor: Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2023-01-09
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Formed alpha-synuclein fibrils after incubation with heparin for 3 days (Hep-remod-3)
To Be Published
4R7W
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BU of 4r7w by Molmil
Crystal structure of 5-methylcytosine deaminase from Klebsiella pneumoniae liganded with phosphonocytosine
Descriptor: (2R)-2-amino-2,5-dihydro-1,5,2-diazaphosphinin-6(1H)-one 2-oxide, 1,2-ETHANEDIOL, Cytosine deaminase, ...
Authors:Fedorov, A.A, Fedorov, E.V, Hitchcock, D.S, Raushel, F.M, Almo, S.C.
Deposit date:2014-08-28
Release date:2014-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Crystal structure of 5-methylcytosine deaminase from Klebsiella pneumoniae liganded with phosphonocytosine
To be Published
1T5G
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BU of 1t5g by Molmil
Arginase-F2-L-Arginine complex
Descriptor: ARGININE, Arginase 1, FLUORIDE ION, ...
Authors:Cama, E, Pethe, S, Boucher, J.-L, Han, S, Emig, F.A, Ash, D.E, Viola, R.E, Mansuy, D, Christianson, D.W.
Deposit date:2004-05-04
Release date:2004-10-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inhibitor coordination interactions in the binuclear manganese cluster of arginase
Biochemistry, 43, 2004
4IJA
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BU of 4ija by Molmil
Structure of S. aureus methicillin resistance factor MecR2
Descriptor: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Arede, P, Botelho, T, Guevara, T, Uson, I, Oliveira, D.C, Gomis-Ruth, F.X.
Deposit date:2012-12-21
Release date:2013-06-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Function Studies of the Staphylococcal Methicillin Resistance Antirepressor MecR2.
J.Biol.Chem., 288, 2013
5KEZ
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BU of 5kez by Molmil
Selective and potent inhibition of the glycosidase human amylase by the short and extremely compact peptide piHA from mRNA display
Descriptor: ACE-DTY-PRO-TYR-SER-CYS-TRP-VAL-ARG-HIS-NH2, CALCIUM ION, CHLORIDE ION, ...
Authors:Caner, S, Brayer, G.D.
Deposit date:2016-06-10
Release date:2017-03-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Rapid Discovery of Potent and Selective Glycosidase-Inhibiting De Novo Peptides.
Cell Chem Biol, 24, 2017
1T9R
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BU of 1t9r by Molmil
Catalytic Domain Of Human Phosphodiesterase 5A
Descriptor: CITRIC ACID, PHOSPHATE ION, ZINC ION, ...
Authors:Zhang, K.Y.J, Card, G.L, Suzuki, Y, Artis, D.R, Fong, D, Gillette, S, Hsieh, D, Neiman, J, West, B.L, Zhang, C, Milburn, M.V, Kim, S.-H, Schlessinger, J, Bollag, G.
Deposit date:2004-05-18
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases
Mol.Cell, 15, 2004
6PPD
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BU of 6ppd by Molmil
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure
Descriptor: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ...
Authors:Gong, D, Dai, X, Jih, J, Liu, Y.T, Bi, G.Q, Sun, R, Zhou, Z.H.
Deposit date:2019-07-06
Release date:2019-09-11
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV.
Cell, 178, 2019

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