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PDB: 53326 件

8DEF
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Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW24 fab
分子名称: SKW24 Fab heavy chain, SKW24 Fab light chain, Spike glycoprotein E1, ...
著者Pletnev, S, Tsybovsky, Y, Verardi, R, Roedeger, M, Kwong, P.D.
登録日2022-06-20
公開日2023-07-05
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Vaccine elicitation and structural basis for antibody protection against alphaviruses.
Cell, 186, 2023
7A4G
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Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-1 (180-mer)
分子名称: Antitermination protein N,6,7-dimethyl-8-ribityllumazine synthase,6,7-dimethyl-8-ribityllumazine synthase
著者Tetter, S, Hilvert, D.
登録日2020-08-19
公開日2021-06-02
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein.
Science, 372, 2021
6UIM
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 7-{[(3-aminopropyl)amino]-2-oxoheptyl} thioacetate
分子名称: 7-[(3-aminopropyl)amino]-1-sulfanylheptan-2-one, PHOSPHATE ION, POTASSIUM ION, ...
著者Herbst-Gervasoni, C.J, Christianson, D.W.
登録日2019-10-01
公開日2019-12-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation.
Biochemistry, 58, 2019
7A4I
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Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-3
分子名称: Antitermination protein N,6,7-dimethyl-8-ribityllumazine synthase,6,7-dimethyl-8-ribityllumazine synthase
著者Tetter, S, Hilvert, D.
登録日2020-08-19
公開日2021-06-02
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (7.04 Å)
主引用文献Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein.
Science, 372, 2021
8JA2
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ASFV Topoisomerase ATPase domain in complex with AMP-PNP and Mg2+
分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Pang, A.H, Chang, C.-W, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
4OAK
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Crystal structure of vancomycin resistance D,D-dipeptidase/D,D-pentapeptidase VanXYc D59S mutant in complex with D-Alanine-D-Alanine and copper (II)
分子名称: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, CHLORIDE ION, COPPER (II) ION, ...
著者Stogios, P.J, Evdokimova, E, Meziane-Cherif, D, Di Leo, R, Yim, V, Courvalin, P, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2014-01-04
公開日2014-01-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the evolution of vancomycin resistance D,D-peptidases.
Proc.Natl.Acad.Sci.USA, 111, 2014
6S7U
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Fumarate hydratase of Mycobacterium tuberculosis in complex with formate and allosteric modulator N-(5-(Azepan-1-ylsulfonyl)-2-methoxyphenyl)-2-(1H-indol-3-yl)acetamide
分子名称: FORMIC ACID, Fumarate hydratase class II, MAGNESIUM ION, ...
著者Whitehouse, A.J, Libardo, M.D, Kasbekar, M, Brear, P, Fischer, G, Thomas, C.J, Barry, C.E, Boshoff, H.I, Coyne, A.G, Abell, C.
登録日2019-07-06
公開日2019-09-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Targeting of Fumarate Hydratase fromMycobacterium tuberculosisUsing Allosteric Inhibitors with a Dimeric-Binding Mode.
J.Med.Chem., 62, 2019
5JQF
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Crystal structure of the lasso peptide Sphingopyxin I (SpI)
分子名称: Sphingopyxin I
著者Fage, C.D, Hegemann, J.D, Harms, K, Bange, G, Marahiel, M.A.
登録日2016-05-04
公開日2016-09-14
最終更新日2021-06-16
実験手法X-RAY DIFFRACTION (0.85 Å)
主引用文献Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase.
Angew. Chem. Int. Ed. Engl., 55, 2016
4XNR
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Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine
分子名称: ADENINE, MAGNESIUM ION, Vibrio Vulnificus Adenine Riboswitch
著者Zhang, J, Liu, Y, Wang, Y.-X, Ferre-D'Amare, A.R.
登録日2015-01-16
公開日2015-05-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Synthesis and applications of RNAs with position-selective labelling and mosaic composition.
Nature, 522, 2015
6I0O
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Structure of human IMP dehydrogenase, isoform 2, bound to GTP
分子名称: GUANOSINE-5'-TRIPHOSPHATE, Inosine-5'-monophosphate dehydrogenase 2, SULFATE ION
著者Buey, R.M, Fernandez-Justel, D, Revuelta, J.L.
登録日2018-10-26
公開日2019-01-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.623 Å)
主引用文献A Nucleotide-Dependent Conformational Switch Controls the Polymerization of Human IMP Dehydrogenases to Modulate their Catalytic Activity.
J. Mol. Biol., 431, 2019
8JA1
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BU of 8ja1 by Molmil
ASFV Topoisomerase ATPase domain in complex with AMP-PNP and Mg2+ (oxidized form)
分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Chang, C.-W, Pang, A.H, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
6RHV
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Crystal structure of mouse CD11b I-domain (CD11b-I) in complex with Staphylococcus aureus octameric bi-component leukocidin LukGH (LukH K319A mutant)
分子名称: Beta-channel forming cytolysin, DIMETHYL SULFOXIDE, Integrin alpha-M, ...
著者Trstenjak, N, Milic, D, Djinovic-Carugo, K, Badarau, A.
登録日2019-04-23
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Molecular mechanism of leukocidin GH-integrin CD11b/CD18 recognition and species specificity.
Proc.Natl.Acad.Sci.USA, 117, 2020
8TZ0
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BU of 8tz0 by Molmil
Structure of a bacterial E1-E2-Ubl complex (form 1)
分子名称: E1(BilD), E2(BilB), Ubl(BilA), ...
著者Ye, Q, Chambers, L.R, Corbett, K.D.
登録日2023-08-26
公開日2024-06-12
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献A eukaryotic-like ubiquitination system in bacterial antiviral defence.
Nature, 631, 2024
5ZUP
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BU of 5zup by Molmil
Crystal Structure of BZ junction in diverse sequence
分子名称: (5'-D(*AP*CP*GP*GP*TP*TP*TP*AP*TP*CP*GP*CP*GP*CP*GP*CP*G)-3'), (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*CP*AP*AP*TP*AP*AP*AP*CP*C)-3'), Double-stranded RNA-specific adenosine deaminase
著者Kim, K.K, Kim, D.
登録日2018-05-08
公開日2018-08-29
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res., 46, 2018
5JSZ
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Folate ECF transporter: apo state
分子名称: Conserved hypothetical membrane protein, Energy-coupling factor transporter ATP-binding protein EcfA1, Energy-coupling factor transporter ATP-binding protein EcfA2, ...
著者Swier, L.J.Y.M, Guskov, A, Slotboom, D.J.
登録日2016-05-09
公開日2016-05-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.004 Å)
主引用文献Structural insight in the toppling mechanism of an energy-coupling factor transporter.
Nat Commun, 7, 2016
4F7C
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Crystal structure of bovine CD1d with bound C12-di-sulfatide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, CD1D antigen, ...
著者Wang, J, Zajonc, D.M.
登録日2012-05-15
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.864 Å)
主引用文献Crystal Structures of Bovine CD1d Reveal Altered αGalCer Presentation and a Restricted A' Pocket Unable to Bind Long-Chain Glycolipids.
Plos One, 7, 2012
6HYA
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BU of 6hya by Molmil
THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL MUTANT Q193L
分子名称: CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, Proton-gated ion channel
著者Hu, H.D, Delarue, M.
登録日2018-10-19
公開日2018-12-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (3.39 Å)
主引用文献Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6U0J
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BU of 6u0j by Molmil
Crosslinked Crystal Structure of Malonyl-CoA Acyl Carrier Protein Transacylase, FabD, and Acyl Carrier Protein, AcpP
分子名称: 1,2-ETHANEDIOL, Acyl carrier protein, Malonyl CoA-acyl carrier protein transacylase, ...
著者Mindrebo, J.T, Misson, L, Davis, T.D, Burkart, M.D, Noel, J.P.
登録日2019-08-14
公開日2020-07-22
最終更新日2020-10-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Interfacial plasticity facilitates high reaction rate of E. coli FAS malonyl-CoA:ACP transacylase, FabD.
Proc.Natl.Acad.Sci.USA, 117, 2020
7RH7
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Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
登録日2021-07-16
公開日2021-08-04
最終更新日2022-02-23
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
1MQM
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BHA/LSTa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
著者ha, y, steven, d.j, skehel, j.j, wiley, d.c.
登録日2002-09-16
公開日2003-08-26
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献X-ray structure of the hemagglutinin of a potential H3 avian progenitor of the 1968 Hong Kong pandemic influenza virus.
Virology, 309, 2003
7R7T
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p47-bound p97-R155H mutant with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, NSFL1 cofactor p47, Transitional endoplasmic reticulum ATPase
著者Nandi, P, Li, S, Coulmbres, R.C.A, Wang, F, Williams, D.R, Malyutin, A.G, Poh, Y.-P, Chou, T.-F, Chiu, P.-L.
登録日2021-06-25
公開日2021-08-04
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes.
Int J Mol Sci, 22, 2021
5CMN
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FLRT3 LRR domain in complex with LPHN3 Olfactomedin domain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Latrophilin-3, ...
著者Lu, Y, Salzman, G, Arac, D.
登録日2015-07-17
公開日2015-08-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.605 Å)
主引用文献Structural Basis of Latrophilin-FLRT-UNC5 Interaction in Cell Adhesion.
Structure, 23, 2015
4XS6
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Salmonella typhimurium AhpC W81F mutant
分子名称: Alkyl hydroperoxide reductase subunit C, POTASSIUM ION
著者Perkins, A, Nelson, K, Parsonage, D, Poole, L, Karplus, P.A.
登録日2015-01-21
公開日2016-01-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Experimentally Dissecting the Origins of Peroxiredoxin Catalysis.
Antioxid.Redox Signal., 28, 2018
6ZLX
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The structure of the ClpX-associated factor PDIP38
分子名称: PLATINUM (II) ION, Polymerase delta-interacting protein 2
著者Zeth, K, Dougan, D.
登録日2020-07-01
公開日2021-07-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (3.394 Å)
主引用文献PDIP38 is a novel adaptor-like modulator of the mitochondrial AAA+ protease CLPXP
To Be Published
7RH5
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Mycobacterial CIII2CIV2 supercomplex, Inhibitor free
分子名称: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
登録日2021-07-16
公開日2021-08-04
最終更新日2021-11-10
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021

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