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PDB: 52220 results

1QWP
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NMR analysis of 25-35 fragment of beta amyloid peptide
Descriptor: 11-mer peptide from Amyloid beta A4 protein
Authors:D'Ursi, A.M, Armenante, M.R, Guerrini, R, Salvadori, S, Sorrentino, G, Picone, D.
Deposit date:2003-09-03
Release date:2004-09-14
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of amyloid beta-peptide (25-35) in different media
J.Med.Chem., 47, 2004
1QYT
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Solution structure of fragment (25-35) of beta amyloid peptide in SDS micellar solution
Descriptor: 11-mer peptide from Amyloid beta A4 protein
Authors:D'Ursi, A.M, Armenante, M.R, Guerrini, R, Salvadori, S, Sorrentino, G, Picone, D.
Deposit date:2003-09-12
Release date:2004-12-14
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of amyloid beta-peptide (25-35) in different media
J.Med.Chem., 47, 2004
2E2X
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Sec14 Homology Module of Neurofibromin in complex with phosphatitylethanolamine
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Neurofibromin, PYROPHOSPHATE 2-
Authors:D'Angelo, I, Welti, S, Scheffzek, K.
Deposit date:2006-11-18
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The sec14 homology module of neurofibromin binds cellular glycerophospholipids: mass spectrometry and structure of a lipid complex
J.Mol.Biol., 366, 2007
2O00
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NMR structure analysis of the Penetratin conjugated Gas (374-394) peptide
Descriptor: Penetratin conjugated Gas (374-394) peptide
Authors:D'Ursi, A.M, Rovero, P, Albrizio, S, Espsito, C, D'Errico, G, Novellino, E.
Deposit date:2006-11-27
Release date:2007-06-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Driving forces in the delivery of penetratin conjugated G protein fragment.
J.Med.Chem., 50, 2007
2NZZ
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BU of 2nzz by Molmil
NMR structure analysis of the Penetratin conjugated Gas (374-394) peptide
Descriptor: Penetratin conjugated Gas (374-394) peptide
Authors:D'Ursi, A.M, Rovero, P, Albrizio, S, Espsito, C, D'Errico, G, Novellino, E.
Deposit date:2006-11-27
Release date:2007-06-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Driving forces in the delivery of penetratin conjugated G protein fragment.
J.Med.Chem., 50, 2007
2HLS
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BU of 2hls by Molmil
The crystal structure of a protein disulfide oxidoreductase from Aeropyrum pernix k1
Descriptor: CHLORIDE ION, protein disulfide oxidoreductase
Authors:D'Ambrosio, K, De Simone, G.
Deposit date:2006-07-10
Release date:2006-10-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:A Novel Member of the Protein Disulfide Oxidoreductase Family from Aeropyrum pernix K1: Structure, Function and Electrostatics.
J.Mol.Biol., 362, 2006
2MS0
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Solution NMR structure pf tRNApro:MLV-Nucleocapsid (1:2) Complex
Descriptor: Nucleocapsid protein p10, ZINC ION, tRNApro
Authors:D'Souza, V, Yildiz, Z.
Deposit date:2014-07-19
Release date:2014-09-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
1U6P
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NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein
Descriptor: 101-MER, Gag polyprotein, ZINC ION
Authors:D'Souza, V, Summers, M.F.
Deposit date:2004-07-30
Release date:2004-11-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus
Nature, 431, 2004
2MS1
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Solution NMR structure of tRNApro:MLV Nucleocapsid Protein (1:1) Complex
Descriptor: Nucleocapsid protein p10, ZINC ION, tRNApro
Authors:D'Souza, V, Yildiz, Z.
Deposit date:2014-07-19
Release date:2014-09-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
2MQT
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Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome
Descriptor: RNA (68-MER)
Authors:D'Souza, V, Yildiz, Z.
Deposit date:2014-06-26
Release date:2014-09-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
2JSI
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11-23 obestatin fragment in DPC/SDS micellar solution
Descriptor: Appetite-regulating hormone, Obestatin
Authors:D'Ursi, A.M, Scrima, M, Esposito, C, Campiglia, P.
Deposit date:2007-07-05
Release date:2008-10-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Obestatin conformational features: a strategy to unveil obestatin's biological role?
Biochem.Biophys.Res.Commun., 363, 2007
2JSH
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obestatin NMR structure in SDS/DPC micellar solution
Descriptor: Appetite-regulating hormone, Obestatin
Authors:D'Ursi, A.M, Scrima, M, Esposito, C, Campiglia, P.
Deposit date:2007-07-05
Release date:2008-10-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Obestatin conformational features: a strategy to unveil obestatin's biological role?
Biochem.Biophys.Res.Commun., 363, 2007
2JSJ
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Obestatin in water solution
Descriptor: Appetite-regulating hormone, Obestatin
Authors:D'Ursi, A.M, Scrima, M, Esposito, C, Campiglia, P.
Deposit date:2007-07-05
Release date:2008-10-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Obestatin conformational features: a strategy to unveil obestatin's biological role?
Biochem.Biophys.Res.Commun., 363, 2007
2MQV
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Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein
Descriptor: Nucleocapsid protein p10, RNA (68-MER), ZINC ION
Authors:D'Souza, V.M, Yildiz, Z.
Deposit date:2014-06-27
Release date:2014-09-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
8UWA
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VH1-18 QxxV class antibody 09-1B12 bound to A/Perth/16/2009 H3N2 hemagglutinin
Descriptor: 09-1B12 heavy chain, 09-1B12 light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Maurer, D.P.
Deposit date:2023-11-06
Release date:2024-05-08
Method:X-RAY DIFFRACTION (4.02 Å)
Cite:Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses.
Immunity, 2024
8VYF
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SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Heavy Chain, ...
Authors:McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-02-08
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.
Nat Commun, 15, 2024
8XJ4
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Structure of prostatic acid phosphatase in human semen
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Prostatic acid phosphatase, alpha-D-mannopyranose, ...
Authors:Liu, X.Z, Li, J.L, Deng, D, Wang, X.
Deposit date:2023-12-20
Release date:2024-02-28
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Purification, identification and Cryo-EM structure of prostatic acid phosphatase in human semen.
Biochem.Biophys.Res.Commun., 702, 2024
9AYF
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Structure of human calcium-sensing receptor in complex with Gi1 (miniGi1) protein in detergent
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(2-chlorophenyl)-N-[(1R)-1-(3-methoxyphenyl)ethyl]propan-1-amine, ...
Authors:Zuo, H, Park, J, Frangaj, A, Ye, J, Lu, G, Manning, J.J, Asher, W.B, Lu, Z, Hu, G, Wang, L, Mendez, J, Eng, E, Zhang, Z, Lin, X, Grasucci, R, Hendrickson, W.A, Clarke, O.B, Javitch, J.A, Conigrave, A.D, Fan, Q.R.
Deposit date:2024-03-07
Release date:2024-04-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Promiscuous G-protein activation by the calcium-sensing receptor.
Nature, 2024
9AXF
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Structure of human calcium-sensing receptor in complex with chimeric Gq (miniGisq) protein in detergent
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(2-chlorophenyl)-N-[(1R)-1-(3-methoxyphenyl)ethyl]propan-1-amine, ...
Authors:Zuo, H, Park, J, Frangaj, A, Ye, J, Lu, G, Manning, J.J, Asher, W.B, Lu, Z, Hu, G, Wang, L, Mendez, J, Eng, E, Zhang, Z, Lin, X, Grasucci, R, Hendrickson, W.A, Clarke, O.B, Javitch, J.A, Conigrave, A.D, Fan, Q.R.
Deposit date:2024-03-06
Release date:2024-04-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Promiscuous G-protein activation by the calcium-sensing receptor.
Nature, 2024
9BDW
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NF-kappaB RelA homo-dimer bound to GC-centric kappaB DNA
Descriptor: DNA (5'-D(P*AP*CP*TP*GP*GP*GP*AP*AP*GP*TP*TP*CP*CP*AP*GP*TP*GP*AP*T)-3'), DNA (5'-D(P*AP*TP*CP*AP*CP*TP*GP*GP*AP*AP*CP*TP*TP*CP*CP*CP*AP*GP*T)-3'), SULFATE ION, ...
Authors:Biswas, T, Shahabi, S, Tsodikov, O.V, Huang, D, Ghosh, G.
Deposit date:2024-04-12
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Transient interactions modulate affinity of NF-kappaB transcription factors for DNA
To Be Published
8VYE
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SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Heavy Chain, S2L20 Light Chain, ...
Authors:McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-02-08
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.
Nat Commun, 15, 2024
8UTE
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BU of 8ute by Molmil
Structure of SARS-Cov2 3CLPro in complex with Compound 27
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S)-6,6-difluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate
Authors:Krishnamurthy, H, Zhuang, N, Qiang, D, Wu, Y, Klein, D.J.
Deposit date:2023-10-31
Release date:2024-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
8UPV
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Structure of SARS-Cov2 3CLPro in complex with Compound 33
Descriptor: 3C-like proteinase nsp5, methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6R)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate
Authors:Krishnamurthy, H, Zhuang, N, Qiang, D, Wu, Y, Klein, D.J.
Deposit date:2023-10-23
Release date:2024-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
8UPS
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Structure of SARS-Cov2 3CLPro in complex with Compound 5
Descriptor: (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, PHOSPHATE ION
Authors:Wu, Y, Qiang, D, Zhuang, N, Krishnamurthy, H, Klein, D.J.
Deposit date:2023-10-23
Release date:2024-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
8UPW
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Structure of SARS-Cov2 3CLPro in complex with Compound 34
Descriptor: 3C-like proteinase nsp5, methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6S)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate
Authors:Krishnamurthy, H, Zhuang, N, Qiang, D, Wu, Y, Klein, D.J.
Deposit date:2023-10-23
Release date:2024-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024

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PDB entries from 2024-05-15

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