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PDB: 155 results

7PW9
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BU of 7pw9 by Molmil
Human SMG1-9 kinase complex bound to AMPPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW4
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BU of 7pw4 by Molmil
Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW5
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Human SMG1-8-9 kinase complex with AlphaFold predicted SMG8 C-terminus, bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7PW7
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BU of 7pw7 by Molmil
Human SMG1-9 kinase complex bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
2WP8
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BU of 2wp8 by Molmil
yeast rrp44 nuclease
Descriptor: CHLORIDE ION, EXOSOME COMPLEX COMPONENT RRP45, EXOSOME COMPLEX COMPONENT SKI6, ...
Authors:Basquin, J, Bonneau, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Yeast Exosome Functions as a Macromolecular Cage to Channel RNA Substrates for Degradation.
Cell(Cambridge,Mass.), 139, 2009
2XZO
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BU of 2xzo by Molmil
Upf1 helicase - RNA complex
Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP)-3', ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chakrabarti, S, Jayachandran, U, Bonneau, F, Fiorini, F, Basquin, C, Domcke, S, Le Hir, H, Conti, E.
Deposit date:2010-11-26
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Mol.Cell, 41, 2011
1A0D
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BU of 1a0d by Molmil
XYLOSE ISOMERASE FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: MANGANESE (II) ION, XYLOSE ISOMERASE
Authors:Gallay, O, Chopra, R, Conti, E, Brick, P, Blow, D.
Deposit date:1997-11-28
Release date:1998-06-03
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structures of Class II Xylose Isomerases from Two Thermophiles and a Hyperthermophile
To be Published
2VXG
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BU of 2vxg by Molmil
Crystal structure of the conserved C-terminal region of Ge-1
Descriptor: CG6181-PA, ISOFORM A
Authors:Jinek, M, Eulalio, A, Lingel, A, Helms, S, Conti, E, Izaurralde, E.
Deposit date:2008-07-04
Release date:2008-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The C-Terminal Region of Ge-1 Presents Conserved Structural Features Required for P-Body Localization.
RNA, 14, 2008
5AIE
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BU of 5aie by Molmil
Not4 ring domain in complex with Ubc4
Descriptor: GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 4, UBIQUITIN-CONJUGATING ENZYME E2 4, ZINC ION
Authors:Bhaskar, V, Basquin, J, Conti, E.
Deposit date:2015-02-12
Release date:2015-04-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Architecture of the Ubiquitylation Module of the Yeast Ccr4-not Complex.
Structure, 23, 2015
4BUJ
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BU of 4buj by Molmil
Crystal structure of the S. cerevisiae Ski2-3-8 complex
Descriptor: ANTIVIRAL HELICASE SKI2, ANTIVIRAL PROTEIN SKI8, SULFATE ION, ...
Authors:Halbach, F, Reichelt, P, Rode, M, Conti, E.
Deposit date:2013-06-20
Release date:2013-08-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:The Yeast Ski Complex: Crystal Structure and RNA Channeling to the Exosome Complex.
Cell(Cambridge,Mass.), 154, 2013
1A0C
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BU of 1a0c by Molmil
XYLOSE ISOMERASE FROM THERMOANAEROBACTERIUM THERMOSULFURIGENES
Descriptor: COBALT (II) ION, XYLOSE ISOMERASE
Authors:Gallay, O, Chopra, R, Conti, E, Brick, P, Blow, D.
Deposit date:1997-11-28
Release date:1998-06-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structures of Class II Xylose Isomerases from Two Thermophiles and a Hyperthermophile
To be Published
2JEA
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BU of 2jea by Molmil
Structure of a 9-subunit archaeal exosome bound to RNA
Descriptor: EXOSOME COMPLEX EXONUCLEASE 1, EXOSOME COMPLEX EXONUCLEASE 2, EXOSOME COMPLEX RNA-BINDING PROTEIN 1, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-16
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2J0S
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BU of 2j0s by Molmil
The crystal structure of the Exon Junction Complex at 2.2 A resolution
Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP *UP*UP*UP*UP*U)-3', ATP-DEPENDENT RNA HELICASE DDX48, MAGNESIUM ION, ...
Authors:Bono, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2006-08-04
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The Crystal Structure of the Exon Junction Complex Reveals How It Mantains a Stable Grip on Mrna
Cell(Cambridge,Mass.), 126, 2006
2JE6
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BU of 2je6 by Molmil
Structure of a 9-subunit archaeal exosome
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, EXOSOME COMPLEX EXONUCLEASE 1, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-15
Release date:2007-01-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2J0Q
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BU of 2j0q by Molmil
The crystal structure of the Exon Junction Complex at 3.2 A resolution
Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ATP-DEPENDENT RNA HELICASE DDX48, MAGNESIUM ION, ...
Authors:Bono, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2006-08-04
Release date:2006-08-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on Mrna.
Cell(Cambridge,Mass.), 126, 2006
2HWW
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BU of 2hww by Molmil
Structure of PIN domain of human SMG6
Descriptor: Telomerase-binding protein EST1A
Authors:Glavan, F, Behm-Ansmant, I, Izaurralde, E, Conti, E.
Deposit date:2006-08-02
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex.
Embo J., 25, 2006
2JEB
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BU of 2jeb by Molmil
Structure of a 9-subunit archaeal exosome bound to Mn ions
Descriptor: CHLORIDE ION, EXOSOME COMPLEX EXONUCLEASE 1, EXOSOME COMPLEX EXONUCLEASE 2, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-16
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2X19
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BU of 2x19 by Molmil
Crystal structure of Importin13 - RanGTP complex
Descriptor: GTP-BINDING NUCLEAR PROTEIN GSP1/CNR1, GUANOSINE-5'-TRIPHOSPHATE, IMPORTIN-13, ...
Authors:Bono, F, Cook, A.G, Gruenwald, M, Ebert, J, Conti, E.
Deposit date:2009-12-23
Release date:2010-02-16
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Nuclear Import Mechanism of the Ejc Component Mago- Y14 Revealed by Structural Studies of Importin 13.
Mol.Cell, 37, 2010
2X1G
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BU of 2x1g by Molmil
Crystal structure of Importin13 - Mago-Y14 complex
Descriptor: CADMUS, PROTEIN MAGO NASHI, RNA-BINDING PROTEIN 8A
Authors:Bono, F, Cook, A.G, Gruenwald, M, Ebert, J, Conti, E.
Deposit date:2009-12-23
Release date:2010-02-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Nuclear Import Mechanism of the Ejc Component Mago- Y14 Revealed by Structural Studies of Importin 13.
Mol.Cell, 37, 2010
2XGJ
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BU of 2xgj by Molmil
Structure of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT RNA HELICASE DOB1, RNA (5'-(*AP*AP*AP*AP*A)-3')
Authors:Weir, J.R, Bonneau, F, Hentschel, J, Conti, E.
Deposit date:2010-06-04
Release date:2010-06-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Analysis Reveals the Characteristic Features of Mtr4, a Dexh Helicase Involved in Nuclear RNA Processing and Surveillance.
Proc.Natl.Acad.Sci.USA, 107, 2010
4BY6
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BU of 4by6 by Molmil
Yeast Not1-Not2-Not5 complex
Descriptor: ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Bhaskar, V, Basquin, J, Conti, E.
Deposit date:2013-07-18
Release date:2013-10-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.797 Å)
Cite:Structure and RNA-Binding Properties of the not1-not2-not5 Module of the Yeast Ccr4-not Complex
Nat.Struct.Mol.Biol., 20, 2013
4AJ5
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BU of 4aj5 by Molmil
Crystal structure of the Ska core complex
Descriptor: SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1, SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2, SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3
Authors:Jeyaprakash, A.A, Santamaria, A, Jayachandran, U, Chan, Y.W, Benda, C, Nigg, E.A, Conti, E.
Deposit date:2012-02-15
Release date:2012-05-23
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structural and Functional Organization of the Ska Complex, a Key Component of the Kinetochore-Microtubule Interface.
Mol.Cell, 46, 2012
2XB2
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BU of 2xb2 by Molmil
Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery
Descriptor: EUKARYOTIC INITIATION FACTOR 4A-III, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Buchwald, G, Ebert, J, Basquin, C, Sauliere, J, Jayachandran, U, Bono, F, Le Hir, H, Conti, E.
Deposit date:2010-04-03
Release date:2010-05-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Insights Into the Recruitment of the Nmd Machinery from the Crystal Structure of a Core Ejc-Upf3B Complex.
Proc.Natl.Acad.Sci.USA, 107, 2010
2XZP
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BU of 2xzp by Molmil
Upf1 helicase
Descriptor: GLYCEROL, MALONATE ION, REGULATOR OF NONSENSE TRANSCRIPTS 1
Authors:Chakrabarti, S, Jayachandran, U, Bonneau, F, Fiorini, F, Basquin, C, Domcke, S, Le Hir, H, Conti, E.
Deposit date:2010-11-26
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Mol.Cell, 41, 2011
2XZL
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BU of 2xzl by Molmil
Upf1-RNA complex
Descriptor: 5- R(*UP*UP*UP*UP*UP*UP*UP*UP*U) -3, ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT HELICASE NAM7, ...
Authors:Chakrabarti, S, Jayachandran, U, Bonneau, F, Fiorini, F, Basquin, C, Domcke, S, Le Hir, H, Conti, E.
Deposit date:2010-11-26
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Mol.Cell, 41, 2011

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