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PDB: 47 results

2BB8
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N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: INTEGRASE
Authors:Clubb, R.T, Connolly, K.M, Wojciak, J.M.
Deposit date:1998-05-12
Release date:1998-11-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Site-specific DNA binding using a variation of the double stranded RNA binding motif.
Nat.Struct.Biol., 5, 1998
1TN9
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THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX
Descriptor: DNA (5'-D(*GP*AP*AP*TP*TP*TP*AP*CP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*TP*AP*GP*TP*AP*AP*AP*TP*TP*C)-3'), PROTEIN (INTEGRASE)
Authors:Clubb, R.T, Wojciak, J.M, Connolly, K.M.
Deposit date:1999-01-21
Release date:1999-09-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the Tn916 integrase-DNA complex.
Nat.Struct.Biol., 6, 1999
1CLH
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THREE-DIMENSIONAL SOLUTION STRUCTURE OF ESCHERICHIA COLI PERIPLASMIC CYCLOPHILIN
Descriptor: CYCLOPHILIN
Authors:Clubb, R.T, Wagner, G.
Deposit date:1993-12-20
Release date:1994-05-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of Escherichia coli periplasmic cyclophilin
Biochemistry, 33, 1994
1B69
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THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX
Descriptor: DNA (5'-D(*GP*AP*AP*TP*TP*TP*AP*CP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*TP*AP*GP*TP*AP*AP*AP*TP*TP*C)-3'), PROTEIN (INTEGRASE)
Authors:Clubb, R.T, Wojciak, J.M, Connolly, K.M.
Deposit date:1999-01-21
Release date:1999-09-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the Tn916 integrase-DNA complex.
Nat.Struct.Biol., 6, 1999
1BB8
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N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, 25 STRUCTURES
Descriptor: INTEGRASE
Authors:Clubb, R.T, Connolly, K.M, Wojciak, J.M.
Deposit date:1998-04-29
Release date:1998-11-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Site-specific DNA binding using a variation of the double stranded RNA binding motif.
Nat.Struct.Biol., 5, 1998
7SJY
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BU of 7sjy by Molmil
Crystal structure of Clostridium thermocellum RsgI9 S1C-NTF2 bi-domain
Descriptor: Anti-sigma-I factor RsgI9, GLYCEROL
Authors:Mahoney, B.J, Cascio, D, Clubb, R.T.
Deposit date:2021-10-19
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of the Clostridium thermocellum RsgI9 ectodomain provides insight into the mechanism of biomass sensing.
Proteins, 90, 2022
7MPK
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Crystal structure of TagA with UDP-GlcNAc
Descriptor: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Authors:Martinez, O.E, Cascio, D, Clubb, R.T.
Deposit date:2021-05-04
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.993 Å)
Cite:Insight into the molecular basis of substrate recognition by the wall teichoic acid glycosyltransferase TagA.
J.Biol.Chem., 298, 2021
8U9O
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Solution structure of RsgI9 CRE domain from C. thermocellum
Descriptor: Anti-sigma-I factor RsgI9
Authors:Takayesu, A, Mahoney, B.J, Clubb, R.T.
Deposit date:2023-09-19
Release date:2024-04-24
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Insight into the autoproteolysis mechanism of the RsgI9 anti-sigma factor from Clostridium thermocellum.
Proteins, 92, 2024
7N41
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Crystal structure of TagA with UDP-ManNAc
Descriptor: (2R,3S,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name), N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase
Authors:Martinez, O.E, Cascio, D, Clubb, R.T.
Deposit date:2021-06-03
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Insight into the molecular basis of substrate recognition by the wall teichoic acid glycosyltransferase TagA.
J.Biol.Chem., 298, 2021
8DOV
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Crystal structure of the Shr Hemoglobin Interacting Domain 2 (HID2) in complex with Hemoglobin
Descriptor: GLYCEROL, Heme-binding protein Shr, Hemoglobin subunit alpha, ...
Authors:Macdonald, R, Mahoney, B.J, Cascio, D, Clubb, R.T.
Deposit date:2022-07-14
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Shr receptor from Streptococcus pyogenes uses a cap and release mechanism to acquire heme-iron from human hemoglobin.
Proc.Natl.Acad.Sci.USA, 120, 2023
7K7F
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Solution Structure of the Corynebacterium diphtheriae SpaA Pilin-Signal Peptide Complex
Descriptor: Putative surface-anchored fimbrial subunit, SpaA sorting signal peptide
Authors:McConnell, S.A, Clubb, R.T.
Deposit date:2020-09-22
Release date:2021-03-10
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Sortase-assembled pili in Corynebacterium diphtheriae are built using a latch mechanism.
Proc.Natl.Acad.Sci.USA, 118, 2021
1Y6U
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The Structure of the Excisionase (Xis) Protein from Conjugative Transposon Tn916 Provides Insights into the Regulation of Heterobivalent Tyrosine Recombinases
Descriptor: Excisionase from transposon Tn916
Authors:Abbani, M, Iwahara, M, Clubb, R.T.
Deposit date:2004-12-07
Release date:2005-03-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The structure of the excisionase (xis) protein from conjugative transposon tn916 provides insights into the regulation of heterobivalent tyrosine recombinases
J.Mol.Biol., 347, 2005
8SQX
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BU of 8sqx by Molmil
Solution structure of the basal pilin SpaB from Corynebacterium diphtheriae
Descriptor: Putative surface anchored protein
Authors:Sue, C.K, Mahoney, B.J, Cheung, N.A, Clubb, R.T.
Deposit date:2023-05-04
Release date:2023-06-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The basal and major pilins in the Corynebacterium diphtheriae SpaA pilus adopt similar structures that competitively react with the pilin polymerase.
Biopolymers, 115, 2024
8SMU
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BU of 8smu by Molmil
Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP
Descriptor: CHLORIDE ION, GLYCEROL, HtaACR2 integral fusion within enhanced green fluorescent protein, ...
Authors:Mahoney, B.J, Cascio, D, Clubb, R.T.
Deposit date:2023-04-26
Release date:2023-09-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Development and atomic structure of a new fluorescence-based sensor to probe heme transfer in bacterial pathogens.
J.Inorg.Biochem., 249, 2023
5CUW
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BU of 5cuw by Molmil
Crystal structure of Sortase E1 from Streptomyces coelicolor with tripeptide in the active site
Descriptor: GLYCEROL, SrtE1
Authors:Kattke, M.D, Cascio, D, Sawaya, M.R, Clubb, R.T.
Deposit date:2015-07-25
Release date:2016-08-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.887 Å)
Cite:Crystal structure of the first class E sortase transpeptidase, SrtE1 from Streptomyces coelicolor
To be published
4NLA
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Structure of the central NEAT domain, N2, of the listerial Hbp2 protein, apo form
Descriptor: Iron-regulated surface determinant protein A, SULFATE ION
Authors:Malmirchegini, G.R, Sawaya, M.R, Clubb, R.T.
Deposit date:2013-11-14
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Novel Mechanism of Hemin Capture by Hbp2, the Hemoglobin-binding Hemophore from Listeria monocytogenes.
J.Biol.Chem., 289, 2014
6DKQ
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BU of 6dkq by Molmil
Crystal structure of the Shr Hemoglobin Interacting Domain 2
Descriptor: Heme-binding protein Shr, SULFATE ION
Authors:Macdonald, R, Cascio, D, Collazo, M.J, Clubb, R.T.
Deposit date:2018-05-30
Release date:2018-10-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Streptococcus pyogenes Shr protein captures human hemoglobin using two structurally unique binding domains.
J.Biol.Chem., 293, 2018
5WB4
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Crystal structure of the TarA wall teichoic acid glycosyltransferase
Descriptor: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, SULFATE ION
Authors:Kattke, M.D, Cascio, D, Sawaya, M.R, Clubb, R.T.
Deposit date:2017-06-27
Release date:2019-01-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria.
Plos Pathog., 15, 2019
5WFG
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BU of 5wfg by Molmil
Crystal structure of the TarA wall teichoic acid glycosyltransferase bound to UDP
Descriptor: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Kattke, M.D, Cascio, D, Sawaya, M.R, Clubb, R.T.
Deposit date:2017-07-11
Release date:2019-01-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria.
Plos Pathog., 15, 2019
4LFD
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BU of 4lfd by Molmil
Staphylococcus aureus sortase B-substrate complex
Descriptor: (CBZ)NPQ(B27) PEPTIDE, SULFATE ION, Sortase B
Authors:Jacobitz, A.W, Sawaya, M.R, Yi, S.W, Amer, B.R, Huang, G.L, Nguyen, A.V, Jung, M.E, Clubb, R.T.
Deposit date:2013-06-26
Release date:2014-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural and Computational Studies of the Staphylococcus aureus Sortase B-Substrate Complex Reveal a Substrate-stabilized Oxyanion Hole.
J.Biol.Chem., 289, 2014
4MYP
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BU of 4myp by Molmil
Structure of the central NEAT domain, N2, of the listerial Hbp2 protein complexed with heme
Descriptor: GLYCEROL, Iron-regulated surface determinant protein A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Malmirchegini, G.R, Sawaya, M.R, Clubb, R.T.
Deposit date:2013-09-27
Release date:2014-10-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel Mechanism of Hemin Capture by Hbp2, the Hemoglobin-binding Hemophore from Listeria monocytogenes.
J.Biol.Chem., 289, 2014
5V8C
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BU of 5v8c by Molmil
LytR-Csp2A-Psr enzyme from Actinomyces oris
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, COBALT (II) ION, PHOSPHATE ION, ...
Authors:Amer, B.R, Sawaya, M.R, Liauw, B, Fu, J.Y, Ton-That, H, Clubb, R.T.
Deposit date:2017-03-21
Release date:2018-04-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure and Mechanism of LcpA, a Phosphotransferase That Mediates Glycosylation of a Gram-Positive Bacterial Cell Wall-Anchored Protein.
MBio, 10, 2019
2RV8
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Solution Structure of the PhoP DNA-Binding Domain from Mycobacterium tuberculosis
Descriptor: DNA-binding response regulator
Authors:Macdonald, R, Sarkar, D, Amer, B.R, Clubb, R.T.
Deposit date:2015-04-17
Release date:2015-08-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the PhoP DNA-binding domain from Mycobacterium tuberculosis.
J.Biomol.Nmr, 63, 2015
2RUI
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Solution Structure of the Bacillus anthracis Sortase A-substrate Complex
Descriptor: Boc-LPAT*, LPXTG-site transpeptidase family protein
Authors:Chan, A.H, Yi, S, Jung, M.E, Clubb, R.T.
Deposit date:2014-06-22
Release date:2015-09-09
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure of the Bacillus anthracis Sortase A Enzyme Bound to Its Sorting Signal: A FLEXIBLE AMINO-TERMINAL APPENDAGE MODULATES SUBSTRATE ACCESS.
J.Biol.Chem., 290, 2015
2WCC
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phage lambda IntDBD1-64 complex with p prime 2 DNA
Descriptor: DNA (5'-D(*DCP*DGP*DAP*DGP*DTP*DCP*DAP *DAP*DAP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DTP*DTP*DTP*DGP *DAP*DCP*DTP*DGP*DC)-3'), INTEGRASE
Authors:Fadeev, E.A, Sam, M.D, Clubb, R.T.
Deposit date:2009-03-11
Release date:2009-04-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Structure of the Amino-Terminal Domain of the Lambda Integrase Protein in Complex with DNA: Immobilization of a Flexible Tail Facilitates Beta- Sheet Recognition of the Major Groove.
J.Mol.Biol., 388, 2009

 

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