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PDB: 103 results

4ZUA
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Crystal structure of the ExsA regulatory domain
Descriptor: Exoenzyme S synthesis regulatory protein ExsA
Authors:Schubot, F.D.
Deposit date:2015-05-15
Release date:2016-02-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Analysis of the Regulatory Domain of ExsA, a Key Transcriptional Regulator of the Type Three Secretion System in Pseudomonas aeruginosa.
Plos One, 10, 2015
5A9E
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BU of 5a9e by Molmil
Cryo-electron tomography and subtomogram averaging of Rous-Sarcoma- Virus deltaMBD virus-like particles
Descriptor: DELTAMBD GAG PROTEIN
Authors:Schur, F.K.M, Dick, R.A, Hagen, W.J.H, Vogt, V.M, Briggs, J.A.G.
Deposit date:2015-07-21
Release date:2015-08-12
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:The Structure of Immature-Like Rous Sarcoma Virus Gag Particles Reveals a Structural Role for the P10 Domain in Assembly.
J.Virol., 89, 2015
4USN
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BU of 4usn by Molmil
The structure of the immature HIV-1 capsid in intact virus particles at sub-nm resolution
Descriptor: P24
Authors:Schur, F.K.M, Hagen, W.J.H, Rumlova, M, Ruml, T, Mueller, B, Kraeusslich, H.-G, Briggs, J.A.G.
Deposit date:2014-07-11
Release date:2014-11-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Structure of the Immature HIV-1 Capsid in Intact Virus Particles at 8.8 A Resolution.
Nature, 517, 2015
6TTR
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Crystal Structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GGDEF diguanylate cyclase DgcB, PHOSPHATE ION
Authors:Holzschuh, F, Schirmer, T, Teixeira, R.D.
Deposit date:2019-12-30
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
To Be Published
6TTS
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Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GGDEF diguanylate cyclase DgcB, SULFATE ION
Authors:Holzschuh, F, Schirmer, T, Teixeira, R.
Deposit date:2019-12-30
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
To Be Published
5L93
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BU of 5l93 by Molmil
An atomic model of HIV-1 CA-SP1 reveals structures regulating assembly and maturation
Descriptor: Capsid protein p24
Authors:Schur, F.K.M, Obr, M, Hagen, W.J.H, Wan, W, Arjen, J.J, Kirkpatrick, J.M, Sachse, C, Kraeusslich, H.-G, Briggs, J.A.G.
Deposit date:2016-06-09
Release date:2016-07-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.
Science, 353, 2016
3FD9
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BU of 3fd9 by Molmil
Crystal Structure of the transcriptional anti-activator ExsD from Pseudomonas aeruginosa
Descriptor: Uncharacterized protein
Authors:Schubot, F.D.
Deposit date:2008-11-25
Release date:2009-06-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural evidence suggests that antiactivator ExsD from Pseudomonas aeruginosa is a DNA binding protein
Protein Sci., 18, 2009
1XL3
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BU of 1xl3 by Molmil
Complex structure of Y.pestis virulence Factors YopN and TyeA
Descriptor: Secretion control protein, protein type A
Authors:Schubot, F.D, Jackson, M.W, Penrose, K.J, Cherry, S, Tropea, J.E, Plano, G.V, Waugh, D.S.
Deposit date:2004-09-30
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis.
J.Mol.Biol., 346, 2005
1XKP
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Crystal structure of the virulence factor YopN in complex with its heterodimeric chaperone SycN-YscB
Descriptor: Chaperone protein sycN, Chaperone protein yscB, putative membrane-bound Yop targeting protein YopN
Authors:Schubot, F.D, Jackson, M.W, Penrose, K.J, Cherry, S, Tropea, J.E, Plano, G.V, Waugh, D.S.
Deposit date:2004-09-29
Release date:2005-03-22
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis.
J.Mol.Biol., 346, 2005
1UG4
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Crystal Structure of Cardiotoxin VI from Taiwan Cobra (Naja atra) Venom
Descriptor: Cytotoxin 6
Authors:Chung, F.-Y, Wu, W.-G, Chen, C.-J.
Deposit date:2003-06-12
Release date:2005-02-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural difference between group I and group II cobra cardiotoxins: X-ray, NMR, and CD analysis of the effect of cis-proline conformation on three-fingered toxins.
Biochemistry, 44, 2005
2IF5
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BU of 2if5 by Molmil
Structure of the POZ domain of human LRF, a master regulator of oncogenesis
Descriptor: PRASEODYMIUM ION, Zinc finger and BTB domain-containing protein 7A
Authors:Schubot, F.D, Waugh, D.S, Tropea, J.
Deposit date:2006-09-20
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the POZ domain of human LRF, a master regulator of oncogenesis.
Biochem.Biophys.Res.Commun., 351, 2006
1I4W
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BU of 1i4w by Molmil
THE CRYSTAL STRUCTURE OF THE TRANSCRIPTION FACTOR SC-MTTFB OFFERS INTRIGUING INSIGHTS INTO MITOCHONDRIAL TRANSCRIPTION
Descriptor: MITOCHONDRIAL REPLICATION PROTEIN MTF1, XENON
Authors:Schubot, F.D, Chen, C.-J, Rose, J.P, Dailey, T.A, Dailey, H.A, Wang, B.-C.
Deposit date:2001-02-23
Release date:2001-10-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription.
Protein Sci., 10, 2001
1JJF
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BU of 1jjf by Molmil
STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY OF THE FERULOYL ESTERASE DOMAIN OF THE CELLULOSOMAL XYLANASE Z OF CLOSTRIDIUM THERMOCELLUM
Descriptor: ENDO-1,4-BETA-XYLANASE Z, PLATINUM (II) ION
Authors:Schubot, F.D, Kataeva, I.A, Blum, D.L, Shah, A.K, Ljungdahl, L.G, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2001-07-05
Release date:2001-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase Z from Clostridium thermocellum.
Biochemistry, 40, 2001
1Z21
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BU of 1z21 by Molmil
Crystal structure of the core domain of Yersinia pestis virulence factor YopR
Descriptor: Yop proteins translocation protein H
Authors:Schubot, F.D, Cherry, S, Tropea, J.E, Austin, B.P, Waugh, D.S.
Deposit date:2005-03-07
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Crystal structure of the protease-resistant core domain of Yersinia pestis virulence factor YopR.
Protein Sci., 14, 2005
1M30
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BU of 1m30 by Molmil
Solution structure of N-terminal SH3 domain from oncogene protein c-Crk
Descriptor: Proto-oncogene C-crk
Authors:Schumann, F.H, Varadan, R, Tayakuniyil, P.P, Hall, J.B, Camarero, J.A, Fushman, D.
Deposit date:2002-06-26
Release date:2003-08-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Changing protein backbone topology: Structural and dynamic consequences of the backbone cyclization in SH3 domain
To be Published
1M3C
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BU of 1m3c by Molmil
Solution structure of a circular form of the N-terminal SH3 domain (E132C, E133G, R191G mutant) from oncogene protein c-Crk
Descriptor: Proto-oncogene C-crk
Authors:Schumann, F.H, Varadan, R, Tayakuniyil, P.P, Hall, J.B, Camarero, J.A, Fushman, D.
Deposit date:2002-06-27
Release date:2003-08-05
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Changing protein backbone topology: Structural and dynamic consequences of the backbone cyclization in SH3 domain
To be Published
1JT2
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BU of 1jt2 by Molmil
STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY OF THE FERUL DOMAIN OF THE CELLULOSOMAL XYLANASE Z FROM C. THERMOCELLUM
Descriptor: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, PROTEIN (ENDO-1,4-BETA-XYLANASE Z)
Authors:Schubot, F.D, Kataeva, I.A, Blum, D.L, Shah, A.K, Ljungdahl, L.G, Rose, J.P, Wang, B.-C.
Deposit date:2001-08-20
Release date:2002-03-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase Z from Clostridium thermocellum.
Biochemistry, 40, 2001
1M3B
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BU of 1m3b by Molmil
Solution structure of a circular form of the N-terminal SH3 domain (A134C, E135G, R191G mutant) from oncogene protein c-Crk.
Descriptor: Proto-oncogene C-crk
Authors:Schumann, F.H, Varadan, R, Tayakuniyil, P.P, Hall, J.B, Camarero, J.A, Fushman, D.
Deposit date:2002-06-27
Release date:2003-08-05
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Changing protein backbone topology: Structural and dynamic consequences of the backbone cyclization in SH3 domain
To be Published
1M3A
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BU of 1m3a by Molmil
Solution structure of a circular form of the truncated N-terminal SH3 domain from oncogene protein c-Crk.
Descriptor: Proto-oncogene C-crk
Authors:Schumann, F.H, Varadan, R, Tayakuniyil, P.P, Hall, J.B, Camarero, J.A, Fushman, D.
Deposit date:2002-06-27
Release date:2003-08-05
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Changing protein backbone topology: Structural and dynamic consequences of the backbone cyclization in SH3 domain
To be Published
1RQ5
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BU of 1rq5 by Molmil
Structural Basis for the Exocellulase Activity of the Cellobiohydrolase CbhA from C. thermocellum
Descriptor: CALCIUM ION, Cellobiohydrolase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Schubot, F.D, Kataeva, I.A, Chang, J, Shah, A.K, Ljungdahl, L.G, Rose, J.P, Wang, B.C.
Deposit date:2003-12-04
Release date:2004-03-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum
Biochemistry, 43, 2004
1UT9
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BU of 1ut9 by Molmil
Structural Basis for the Exocellulase Activity of the Cellobiohydrolase CbhA from C. thermocellum
Descriptor: CELLULOSE 1,4-BETA-CELLOBIOSIDASE
Authors:Schubot, F.D, Kataeva, I.A, Chang, J, Shah, A.K, Ljungdahl, L.G, Rose, J.P, Wang, B.C.
Deposit date:2003-12-04
Release date:2004-02-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum.
Biochemistry, 43, 2004
7DS7
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BU of 7ds7 by Molmil
The Crystal Structure of Leaf-branch compost cutinase from Biortus.
Descriptor: CITRIC ACID, GLYCEROL, IMIDAZOLE, ...
Authors:Wang, F, Lv, Z, Cheng, W, Lin, D, Chu, F, Xu, X, Tan, J.
Deposit date:2020-12-30
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The Crystal Structure of Leaf-branch compost cutinase from Biortus.
To Be Published
3I6K
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BU of 3i6k by Molmil
Newly identified epitope from SARS-CoV membrane protein complexed with HLA-A*0201
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-2 alpha chain, ...
Authors:Liu, J, Sun, Y, Qi, J, Chu, F, Wu, H, Gao, F, Li, T, Yan, J, Gao, G.F.
Deposit date:2009-07-07
Release date:2010-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The membrane protein of severe acute respiratory syndrome coronavirus acts as a dominant immunogen revealed by a clustering region of novel functionally and structurally defined cytotoxic T-lymphocyte epitopes
J Infect Dis, 202, 2010
1ZVS
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BU of 1zvs by Molmil
Crystal structure of the first class MHC mamu and Tat-Tl8 complex
Descriptor: Beta-2-microglobulin, MHC class I antigen, Tat-Tl8
Authors:Lou, Z, Chu, F, Gao, G.F, Rao, Z.
Deposit date:2005-06-02
Release date:2006-06-13
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:First glimpse of the peptide presentation by rhesus macaque MHC class I: crystal structures of Mamu-A*01 complexed with two immunogenic SIV epitopes and insights into CTL escape.
J Immunol., 178, 2007
3FN3
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BU of 3fn3 by Molmil
Dimeric Structure of PD-L1
Descriptor: Programmed cell death 1 ligand 1
Authors:Chen, Y, Gao, F, Liu, P, Chu, F, Qi, J, Gao, G.F.
Deposit date:2008-12-23
Release date:2009-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A dimeric structure of PD-L1: functional units or evolutionary relics?
Protein Cell, 1, 2010

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PDB entries from 2024-07-17

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