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PDB: 268 results

2O5K
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BU of 2o5k by Molmil
Crystal Structure of GSK3beta in complex with a benzoimidazol inhibitor
Descriptor: 2-(2,4-DICHLORO-PHENYL)-7-HYDROXY-1H-BENZOIMIDAZOLE-4-CARBOXYLIC ACID [2-(4-METHANESULFONYLAMINO-PHENYL)-ETHYL]-AMIDE, Glycogen synthase kinase-3 beta
Authors:Shin, D, Lee, S.C, Heo, Y.S, Cho, Y.S, Kim, Y.E, Hyun, Y.L, Cho, J.M, Lee, Y.S, Ro, S.
Deposit date:2006-12-06
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Design and synthesis of 7-hydroxy-1H-benzoimidazole derivatives as novel inhibitors of glycogen synthase kinase-3beta
Bioorg.Med.Chem.Lett., 17, 2007
8IED
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BU of 8ied by Molmil
Cryo-EM structure of GPR156-miniGo-scFv16 complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(o) subunit alpha, ...
Authors:Shin, J, Park, J, Cho, Y.
Deposit date:2023-02-15
Release date:2024-02-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Constitutive activation mechanism of a class C GPCR.
Nat.Struct.Mol.Biol., 31, 2024
8IEB
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BU of 8ieb by Molmil
Cryo-EM structure of GPR156 of GPR156-miniGo-scFv16 complex (local refine)
Descriptor: Probable G-protein coupled receptor 156, [(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate
Authors:Shin, J, Park, J, Cho, Y.
Deposit date:2023-02-15
Release date:2024-02-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Constitutive activation mechanism of a class C GPCR.
Nat.Struct.Mol.Biol., 31, 2024
8IEP
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BU of 8iep by Molmil
Cryo-EM structure of GPR156C/D of G-protein free GPR156 (local refine)
Descriptor: Probable G-protein coupled receptor 156, [(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate
Authors:Shin, J, Park, J, Cho, Y.
Deposit date:2023-02-15
Release date:2024-02-14
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Constitutive activation mechanism of a class C GPCR.
Nat.Struct.Mol.Biol., 31, 2024
8IEI
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BU of 8iei by Molmil
Cryo-EM structure of GPR156A/B of G-protein free GPR156 (local refine)
Descriptor: Probable G-protein coupled receptor 156, [(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate
Authors:Shin, J, Park, J, Cho, Y.
Deposit date:2023-02-15
Release date:2024-02-14
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Constitutive activation mechanism of a class C GPCR.
Nat.Struct.Mol.Biol., 31, 2024
6JJK
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BU of 6jjk by Molmil
Crystal structure of the DegP dodecamer with a modulator
Descriptor: CYS-TYR-TYR-LYS-ILE, Periplasmic serine endoprotease DegP
Authors:Cho, H, Choi, Y, Lee, H.H, Kim, S.
Deposit date:2019-02-26
Release date:2020-09-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy
Commun Biol, 3, 2020
5E9H
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BU of 5e9h by Molmil
Structural insights of isocitrate lyases from Fusarium graminearum
Descriptor: Isocitrate lyase, MALONATE ION, MANGANESE (II) ION
Authors:Park, Y, Cho, Y, Lee, Y.-H, Lee, Y.-W, Rhee, S.
Deposit date:2015-10-15
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure and functional analysis of isocitrate lyases from Magnaporthe oryzae and Fusarium graminearum
J.Struct.Biol., 194, 2016
5E9G
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BU of 5e9g by Molmil
Structural insights of isocitrate lyases from Magnaporthe oryzae
Descriptor: GLYCEROL, GLYOXYLIC ACID, Isocitrate lyase, ...
Authors:Park, Y, Cho, Y, Lee, Y.-H, Lee, Y.-W, Rhee, S.
Deposit date:2015-10-15
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure and functional analysis of isocitrate lyases from Magnaporthe oryzae and Fusarium graminearum
J.Struct.Biol., 194, 2016
5E9F
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BU of 5e9f by Molmil
Structural insights of isocitrate lyases from Magnaporthe oryzae
Descriptor: Isocitrate lyase, MAGNESIUM ION
Authors:Park, Y, Cho, Y, Lee, Y.-H, Lee, Y.-W, Rhee, S.
Deposit date:2015-10-15
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure and functional analysis of isocitrate lyases from Magnaporthe oryzae and Fusarium graminearum
J.Struct.Biol., 194, 2016
7YXA
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BU of 7yxa by Molmil
XFEL crystal structure of the human sphingosine 1 phosphate receptor 5 in complex with ONO-5430608
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[6-(2-naphthalen-1-ylethoxy)-2,3,4,5-tetrahydro-1H-3-benzazepin-3-ium-3-yl]butanoic acid, ...
Authors:Lyapina, E, Marin, E, Gusach, A, Orekhov, P, Gerasimov, A, Luginina, A, Vakhrameev, D, Ergasheva, M, Kovaleva, M, Khusainov, G, Khorn, P, Shevtsov, M, Kovalev, K, Okhrimenko, I, Bukhdruker, S, Popov, P, Hu, H, Weierstall, U, Liu, W, Cho, Y, Gushchin, I, Rogachev, A, Bourenkov, G, Park, S, Park, G, Huyn, H.J, Park, J, Gordeliy, V, Borshchevskiy, V, Mishin, A, Cherezov, V.
Deposit date:2022-02-15
Release date:2022-08-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for receptor selectivity and inverse agonism in S1P 5 receptors.
Nat Commun, 13, 2022
5A1N
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BU of 5a1n by Molmil
The crystal structure of the GST-like domains complex of EPRS-AIMP2 mutant S156D
Descriptor: AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN 2, BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE, GLYCEROL
Authors:Cho, H.Y, Choi, Y.S, Kang, B.S.
Deposit date:2015-05-03
Release date:2016-06-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Symmetric Assembly of a Decameric Subcomplex in Human Multi-tRNA Synthetase Complex Via Interactions between Glutathione Transferase-Homology Domains and Aspartyl-tRNA Synthetase.
J.Mol.Biol., 2019
5X06
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BU of 5x06 by Molmil
DNA replication regulation protein
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ...
Authors:Kim, J, Cho, Y.
Deposit date:2017-01-20
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.237 Å)
Cite:Replication regulation protein
To Be Published
1WOU
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BU of 1wou by Molmil
Crystal Structure of human Trp14
Descriptor: thioredoxin -related protein, 14 kDa
Authors:Woo, J.R, Kim, S.J, Jeong, W, Cho, Y.H, Lee, S.C, Chung, Y.J, Rhee, S.G, Ryu, S.E.
Deposit date:2004-08-25
Release date:2004-09-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of cellular redox regulation by human TRP14
J.Biol.Chem., 279, 2004
7WRS
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BU of 7wrs by Molmil
Crystal structure of the chicken isoleucyl-tRNA synthetase 1 (IARS1) UNE-I complexed with glutamyl-tRNA synthetase 1 (EARS1)
Descriptor: Glutamyl-tRNA synthetase, Isoleucyl-tRNA synthetase
Authors:Chung, S, Cho, Y.
Deposit date:2022-01-27
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Regulation of BRCA1 stability through the tandem UBX domains of isoleucyl-tRNA synthetase 1.
Nat Commun, 13, 2022
7WRU
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BU of 7wru by Molmil
Crystal structure of the apo chicken glutamyl-tRNA synthetase 1 (EARS1)
Descriptor: Glutamyl-tRNA synthetase, MERCURY (II) ION
Authors:Chung, S, Cho, Y.
Deposit date:2022-01-27
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Regulation of BRCA1 stability through the tandem UBX domains of isoleucyl-tRNA synthetase 1.
Nat Commun, 13, 2022
2EHO
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BU of 2eho by Molmil
Crystal structure of human GINS complex
Descriptor: DNA replication complex GINS protein PSF1, DNA replication complex GINS protein PSF2, GINS complex subunit 3, ...
Authors:Choi, J.M, Lim, H.S, Kim, J.J, Song, O.K, Cho, Y.
Deposit date:2007-03-07
Release date:2007-06-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the human GINS complex
Genes Dev., 21, 2007
8K6X
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BU of 8k6x by Molmil
Crystal structure of E.coli Cyanase complex with cyanate and bicarbonate
Descriptor: CARBONATE ION, Cyanate hydratase, SULFATE ION, ...
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6U
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BU of 8k6u by Molmil
Serial Femtosecond X-ray structure of E.coli Cyanase with un-modeled density at active site
Descriptor: Cyanate hydratase, SULFATE ION
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6G
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BU of 8k6g by Molmil
Crystal structure of E.coli Cyanase
Descriptor: Cyanate hydratase, SULFATE ION
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6H
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BU of 8k6h by Molmil
Crystal structure of e.coli cyanase complex with cyanate
Descriptor: Cyanate hydratase, SULFATE ION, cyanic acid
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6S
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BU of 8k6s by Molmil
Crystal structure of E.coli Cyanase complex with bicarbonate
Descriptor: CARBONATE ION, Cyanate hydratase, SULFATE ION
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
3IJJ
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BU of 3ijj by Molmil
Ternary Complex of Macrophage Migration Inhibitory Factor (MIF) Bound Both to 4-hydroxyphenylpyruvate and to the Allosteric Inhibitor AV1013 (R-stereoisomer)
Descriptor: (2E)-2-hydroxy-3-(4-hydroxyphenyl)prop-2-enoic acid, (2R)-2-amino-1-[2-(1-methylethyl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one, 3-(4-HYDROXY-PHENYL)PYRUVIC ACID, ...
Authors:Crichlow, G.V, Cho, Y, Lolis, E.J.
Deposit date:2009-08-04
Release date:2010-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Allosteric inhibition of macrophage migration inhibitory factor revealed by ibudilast.
Proc.Natl.Acad.Sci.USA, 107, 2010
3IJG
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BU of 3ijg by Molmil
Macrophage Migration Inhibitory Factor (MIF) Bound to the (R)-Stereoisomer of AV1013
Descriptor: (2R)-2-amino-1-[2-(1-methylethyl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one, CHLORIDE ION, Macrophage migration inhibitory factor
Authors:Crichlow, G.V, Cho, Y, Lolis, E.J.
Deposit date:2009-08-04
Release date:2010-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Allosteric inhibition of macrophage migration inhibitory factor revealed by ibudilast.
Proc.Natl.Acad.Sci.USA, 107, 2010
4CF7
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BU of 4cf7 by Molmil
Crystal structure of adenylate kinase from Aquifex aeolicus with MgADP bound
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENYLATE KINASE, ...
Authors:Kerns, S.J, Agafonov, R.V, Cho, Y.-J, Pontiggia, F, Otten, R, Pachov, D.V, Kutter, S, Phung, L.A, Murphy, P.N, Thai, V, Hagan, M.F, Kern, D.
Deposit date:2013-11-13
Release date:2014-12-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.594 Å)
Cite:The Energy Landscape of Adenylate Kinase During Catalysis.
Nat.Struct.Mol.Biol., 22, 2015
7EWP
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BU of 7ewp by Molmil
Cryo-EM structure of human GPR158 in complex with RGS7-Gbeta5 in a 2:1:1 ratio
Descriptor: Guanine nucleotide-binding protein subunit beta-5, Probable G-protein coupled receptor 158, Regulator of G-protein signaling 7
Authors:Kim, Y, Jeong, E, Jeong, J, Cho, Y.
Deposit date:2021-05-25
Release date:2021-12-01
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure of the class C orphan GPCR GPR158 in complex with RGS7-G beta 5.
Nat Commun, 12, 2021

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