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PDB: 104 results

5SMI
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BU of 5smi by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z71580604
Descriptor: (2S)-N-(5-methylpyridin-2-yl)oxolane-2-carboxamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:2022-03-03
Release date:2022-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:PanDDA analysis group deposition
To Be Published
5SL8
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BU of 5sl8 by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434762
Descriptor: N,N-dimethylpyridin-4-amine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:2022-03-03
Release date:2022-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:PanDDA analysis group deposition
To Be Published
5SLN
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BU of 5sln by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z57299529
Descriptor: PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ...
Authors:Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:2022-03-03
Release date:2022-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:PanDDA analysis group deposition
To Be Published
5SM2
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BU of 5sm2 by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z3006151474
Descriptor: (5S)-5-(difluoromethoxy)pyridin-2(5H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:2022-03-03
Release date:2022-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:PanDDA analysis group deposition
To Be Published
5SMH
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BU of 5smh by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434938
Descriptor: 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanamine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:2022-03-03
Release date:2022-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:PanDDA analysis group deposition
To Be Published
4Y0L
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BU of 4y0l by Molmil
Mycobacterial membrane protein MmpL11D2
Descriptor: IODIDE ION, Putative membrane protein mmpL11, SULFATE ION
Authors:Torres, R, Chim, N, Goulding, C.W.
Deposit date:2015-02-06
Release date:2015-08-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Structure and Interactions of Periplasmic Domains of Crucial MmpL Membrane Proteins from Mycobacterium tuberculosis.
Chem.Biol., 22, 2015
7RSU
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BU of 7rsu by Molmil
TNA polymerase, n+2 product
Descriptor: DNA polymerase, Primer, Template
Authors:Maola, V, Chaput, J, Chim, N.
Deposit date:2021-08-11
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Synthesis and Polymerase Recognition of Threose Nucleic Acid Triphosphates Equipped with Diverse Chemical Functionalities.
J.Am.Chem.Soc., 143, 2021
7RSS
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BU of 7rss by Molmil
Kod-RI incorporating DNA, n+2
Descriptor: DNA polymerase, Primer, Template
Authors:Hajjar, M, Chim, N, Chaput, J.C.
Deposit date:2021-08-11
Release date:2022-08-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystallographic analysis of engineered polymerases synthesizing phosphonomethylthreosyl nucleic acid.
Nucleic Acids Res., 50, 2022
7RSR
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BU of 7rsr by Molmil
Kod-RI incorporating PMT, n+2
Descriptor: DNA polymerase, Primer, Template
Authors:Hajjar, M, Chim, N, Chaput, J.C.
Deposit date:2021-08-11
Release date:2022-08-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystallographic analysis of engineered polymerases synthesizing phosphonomethylthreosyl nucleic acid.
Nucleic Acids Res., 50, 2022
6MU4
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BU of 6mu4 by Molmil
Bst DNA polymerase I FANA/DNA binary complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA polymerase I, ...
Authors:Jackson, L.N, Chim, N, Chaput, J.C.
Deposit date:2018-10-22
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.
Nucleic Acids Res., 47, 2019
6MU5
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BU of 6mu5 by Molmil
Bst DNA polymerase I TNA/DNA binary complex
Descriptor: DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA polymerase I, SULFATE ION, ...
Authors:Jackson, L.N, Chim, N, Chaput, J.C.
Deposit date:2018-10-22
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.912 Å)
Cite:Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.
Nucleic Acids Res., 47, 2019
4IVH
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BU of 4ivh by Molmil
Crystal structure of QKLVFFAED nonapeptide segment from amyloid beta incorporated into a macrocyclic beta-sheet template
Descriptor: SODIUM ION, TERTIARY-BUTYL ALCOHOL, cyclo[Gln-Lys-Leu-Val-Phe-Phe-Ala-Glu-Asp-(delta-linked-Orn)-Hao-Lys-Hao-(p-bromoPhe)-Thr-(delta-linked-Orn)]
Authors:Pham, J.D, Chim, N, Goulding, C.W, Nowick, J.S.
Deposit date:2013-01-22
Release date:2013-07-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structures of beta-Amyloid Peptide Oligomers
J.Am.Chem.Soc., 2013
3MAY
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BU of 3may by Molmil
Crystal structure of a secreted Mycobacterium tuberculosis heme-binding protein
Descriptor: POSSIBLE EXPORTED PROTEIN
Authors:Goulding, C.W, Chim, N.
Deposit date:2010-03-24
Release date:2011-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Discovery and characterization of a unique mycobacterial heme acquisition system.
Proc.Natl.Acad.Sci.USA, 108, 2011
2LBW
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BU of 2lbw by Molmil
Solution structure of the S. cerevisiae H/ACA RNP protein Nhp2p-S82W mutant
Descriptor: H/ACA ribonucleoprotein complex subunit 2
Authors:Koo, B, Park, C, Fernandez, C.F, Chim, N, Ding, Y, Chanfreau, G, Feigon, J.
Deposit date:2011-04-07
Release date:2011-07-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a Conserved Proline at the RNA and Nop10 Binding Interface.
J.Mol.Biol., 411, 2011
2LBX
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BU of 2lbx by Molmil
Solution structure of the S. cerevisiae H/ACA RNP protein Nhp2p
Descriptor: H/ACA ribonucleoprotein complex subunit 2
Authors:Koo, B, Park, C, Fernandez, C.F, Chim, N, Ding, Y, Chanfreau, G, Feigon, J.
Deposit date:2011-04-07
Release date:2011-07-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a Conserved Proline at the RNA and Nop10 Binding Interface.
J.Mol.Biol., 411, 2011
7TQW
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BU of 7tqw by Molmil
Kod RSGA incorporating PMT, n+2
Descriptor: DNA polymerase, Primer, Template
Authors:Hajjar, M, Chim, N, Chaput, J.C.
Deposit date:2022-01-27
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystallographic analysis of engineered polymerases synthesizing phosphonomethylthreosyl nucleic acid.
Nucleic Acids Res., 50, 2022
2QH3
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BU of 2qh3 by Molmil
Solution structure of the U64 H/ACA snoRNA 3' terminal hairpin loop
Descriptor: Human U64 H/ACA snoRNA
Authors:Feigon, J, Theimer, C.A, Chim, N, Breece, K.E.
Deposit date:2007-06-29
Release date:2007-09-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and functional characterization of human telomerase RNA processing and cajal body localization signals.
Mol.Cell, 27, 2007
2QH2
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BU of 2qh2 by Molmil
Solution structure of the CR7 terminal hairpin loop from human telomerase RNA
Descriptor: Human telomerase RNA CR7 terminal hairpin loop
Authors:Feigon, J, Theimer, C.A, Chim, N, Breece, K.E.
Deposit date:2007-06-29
Release date:2007-09-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and functional characterization of human telomerase RNA processing and cajal body localization signals.
Mol.Cell, 27, 2007
2QH4
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BU of 2qh4 by Molmil
Solution structure of the U85 C/D-H/ACA scaRNA 5' terminal hairpin loop
Descriptor: Human U85 C/D-H/ACA scaRNA
Authors:Feigon, J, Theimer, C.A, Chim, N, Breece, K.E.
Deposit date:2007-06-29
Release date:2007-09-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural and functional characterization of human telomerase RNA processing and cajal body localization signals.
Mol.Cell, 27, 2007
7SMJ
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BU of 7smj by Molmil
F2N structure, protein design with deep learning
Descriptor: AI-designed TIM-barrel F2N
Authors:Mathews, I.I, Anand-Achim, N, Huang, P.
Deposit date:2021-10-26
Release date:2022-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
8A7N
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BU of 8a7n by Molmil
Crystal Structure of human Brachyury G177D variant in complex with (S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide (CF-2-125)
Descriptor: N-(3-azanylpropyl)-3-[[(3S)-1-(2-fluorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-N-methyl-benzamide, PHOSPHATE ION, T-box transcription factor T
Authors:Newman, J.A, Gavard, A, Aitkenhead, H, Imprachim, N, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Bountra, C, Gileadi, O.
Deposit date:2022-06-21
Release date:2022-10-05
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of human Brachyury G177D variant in complex with (S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide (CF-2-125)
To Be Published
7ZK2
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BU of 7zk2 by Molmil
Crystal Structure of human Brachyury G177D variant in complex with CSC027898502
Descriptor: N-[4-(2-morpholin-4-yl-1,3-thiazol-4-yl)phenyl]ethanamide, PHOSPHATE ION, T-box transcription factor T
Authors:Newman, J.A, Gavard, A, Aitkenhead, H, Imprachim, N, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Bountra, C, Gileadi, O.
Deposit date:2022-04-12
Release date:2022-06-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of human Brachyury G177D variant in complex with CSC027898502
To Be Published
7ZKF
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BU of 7zkf by Molmil
Crystal Structure of human Brachyury G177D variant in complex with CF-5-86
Descriptor: PHOSPHATE ION, T-box transcription factor T, UNKNOWN LIGAND
Authors:Newman, J.A, Gavard, A, Aitkenhead, H, Imprachim, N, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Bountra, C, Gileadi, O.
Deposit date:2022-04-12
Release date:2022-06-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal Structure of human Brachyury G177D variant in complex with CF-5-86
To Be Published
7ZL2
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BU of 7zl2 by Molmil
Crystal Structure of human Brachyury G177D variant in complex with Molpolrt-039-246-810
Descriptor: T-box transcription factor T, UNKNOWN LIGAND
Authors:Newman, J.A, Gavard, A, Aitkenhead, H, Imprachim, N, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Bountra, C, Gileadi, O.
Deposit date:2022-04-13
Release date:2022-06-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of human Brachyury G177D variant in complex with Molpolrt-039-246-810
To Be Published
8A10
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BU of 8a10 by Molmil
Crystal Structure of human Brachyury G177D variant in complex with Molpolrt-020-049-143
Descriptor: T-box transcription factor T, UNKNOWN LIGAND
Authors:Newman, J.A, Gavard, A, Aitkenhead, H, Imprachim, N, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Bountra, C, Gileadi, O.
Deposit date:2022-05-30
Release date:2022-07-13
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal Structure of human Brachyury G177D variant in complex with Molpolrt-020-049-143
To Be Published

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