Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 623 件
7BQU
DownloadVisualize
BU of 7bqu by Molmil
Cereblon in complex with SALL4 and (S)-thalidomide
分子名称: Protein cereblon, S-Thalidomide, Sal-like protein 4, ...
著者Furihata, H, Miyauchi, Y, Asano, A, Tanokura, M, Miyakawa, T.
登録日2020-03-25
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural bases of IMiD selectivity that emerges by 5-hydroxythalidomide.
Nat Commun, 11, 2020
3A33
DownloadVisualize
BU of 3a33 by Molmil
UbcH5b~Ubiquitin Conjugate
分子名称: GLYCEROL, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2
著者Sakata, E, Satoh, T, Yamamoto, S, Yamaguchi, Y, Yagi-Utsumi, M, Kurimoto, E, Wakatsuki, S, Kato, K.
登録日2009-06-08
公開日2009-11-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of UbcH5b~Ubiquitin Intermediate: Insight into the Formation of the Self-Assembled E2~Ub Conjugates
Structure, 18, 2010
7KLX
DownloadVisualize
BU of 7klx by Molmil
Protein Tyrosine Phosphatase 1B with inhibitor
分子名称: 2-(2,5-dimethyl-1H-pyrrol-1-yl)-5-hydroxybenzoic acid, MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
著者Battaile, K.P, Chirgadze, Y, Ruzanov, M, Romanov, V, Lam, K, Gordon, R, Lin, A, Lam, R, Pai, E, Chirgadze, N.
登録日2020-11-01
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.839 Å)
主引用文献Signal transfer in human protein tyrosine phosphatase PTP1B from allosteric inhibitor P00058.
J.Biomol.Struct.Dyn., 2021
3AEX
DownloadVisualize
BU of 3aex by Molmil
Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8
分子名称: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid, PHOSPHATE ION, Threonine synthase
著者Murakawa, T, Machida, Y, Hayashi, H.
登録日2010-02-13
公開日2010-11-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Product-assisted catalysis as the basis of the reaction specificity of threonine synthase.
J.Biol.Chem., 286, 2011
7CKE
DownloadVisualize
BU of 7cke by Molmil
Solution structure of NCR169 oxidized form 2 from Medicago truncatula
分子名称: Nodule Cysteine-Rich (NCR) secreted peptide
著者Isozumi, N, Masubuchi, Y, Ohki, S.
登録日2020-07-16
公開日2021-05-26
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and antimicrobial activity of NCR169, a nodule-specific cysteine-rich peptide of Medicago truncatula.
Sci Rep, 11, 2021
7CKD
DownloadVisualize
BU of 7ckd by Molmil
Solution structure of NCR169 oxidized form 1 from Medicago truncatula
分子名称: Nodule Cysteine-Rich (NCR) secreted peptide
著者Isozumi, N, Masubuchi, Y, Ohki, S.
登録日2020-07-16
公開日2021-05-26
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and antimicrobial activity of NCR169, a nodule-specific cysteine-rich peptide of Medicago truncatula.
Sci Rep, 11, 2021
7DGN
DownloadVisualize
BU of 7dgn by Molmil
The Co-bound dimeric structure of K79H/G80A/H81A myoglobin
分子名称: COBALT (II) ION, Myoglobin, OXYGEN ATOM, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGJ
DownloadVisualize
BU of 7dgj by Molmil
The dimeric structure of K78H/G80A/H82A myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGM
DownloadVisualize
BU of 7dgm by Molmil
The dimeric structure of K79H/G80A/H81A myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGL
DownloadVisualize
BU of 7dgl by Molmil
The Ni-bound dimeric structure of K78H/G80A/H82A myoglobin
分子名称: Myoglobin, NICKEL (II) ION, OXYGEN ATOM, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGO
DownloadVisualize
BU of 7dgo by Molmil
The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGK
DownloadVisualize
BU of 7dgk by Molmil
The Co-bound dimeric structure of K78H/G80A/H82A myoglobin
分子名称: COBALT (II) ION, Myoglobin, OXYGEN ATOM, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
3AN1
DownloadVisualize
BU of 3an1 by Molmil
Crystal structure of rat D428A mutant, urate bound form
分子名称: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T.
登録日2010-08-27
公開日2010-12-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
3AT9
DownloadVisualize
BU of 3at9 by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride and 10 mM magnesium chloride)
分子名称: MAGNESIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
7ECK
DownloadVisualize
BU of 7eck by Molmil
RNA duplex containing C-Ag-A and U-Ag-A base pairs
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献RNA duplex containing C-Ag-A and U-Ag-A base pairs
To Be Published
7EAP
DownloadVisualize
BU of 7eap by Molmil
Crystal structure of IpeA-XXXG complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Matsuzawa, T, Watanabe, M, Nakamichi, Y, Akita, H, Yaoi, K.
登録日2021-03-08
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Structural basis for the catalytic mechanism of the glycoside hydrolase family 3 isoprimeverose-producing oligoxyloglucan hydrolase from Aspergillus oryzae.
Febs Lett., 596, 2022
7ECJ
DownloadVisualize
BU of 7ecj by Molmil
RNA duplex containing C-A base pairs
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献RNA duplex containing C-A base pairs
To Be Published
7ECL
DownloadVisualize
BU of 7ecl by Molmil
RNA duplex containing C-Ag-A and U-Ag-A base pair
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献RNA duplex containing C-Ag-A and U-Ag-A base pair
To Be Published
3AQP
DownloadVisualize
BU of 3aqp by Molmil
Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
分子名称: Probable SecDF protein-export membrane protein
著者Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O.
登録日2010-11-16
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
3AEY
DownloadVisualize
BU of 3aey by Molmil
Apo form of threonine synthase from Thermus thermophilus HB8
分子名称: SULFATE ION, Threonine synthase
著者Murakawa, T, Machida, Y, Hayashi, H.
登録日2010-02-17
公開日2010-11-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Product-assisted catalysis as the basis of the reaction specificity of threonine synthase.
J.Biol.Chem., 286, 2011
3ATB
DownloadVisualize
BU of 3atb by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride)
分子名称: GADOLINIUM ATOM, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3AUW
DownloadVisualize
BU of 3auw by Molmil
Cytoplasmic domain of inward rectifier potassium channel Kir3.2 in complex with cadmium
分子名称: CADMIUM ION, ETHANOL, MAGNESIUM ION, ...
著者Inanobe, A, Kurachi, Y.
登録日2011-02-17
公開日2011-10-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.56 Å)
主引用文献Inverse agonist-like action of cadmium on G-protein-gated inward-rectifier K(+) channels
Biochem.Biophys.Res.Commun., 407, 2011
3AT8
DownloadVisualize
BU of 3at8 by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride)
分子名称: BARIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATF
DownloadVisualize
BU of 3atf by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 200 mM Cesium chloride)
分子名称: CESIUM ION, ETHANOL, MAGNESIUM ION, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATD
DownloadVisualize
BU of 3atd by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride and 10 mM magnesium chloride)
分子名称: GADOLINIUM ATOM, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon