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PDB: 216 results

8TR3
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BU of 8tr3 by Molmil
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CNE40 SOSIP Envelope glycoprotein gp120, ...
Authors:Chan, K.-W, Kong, X.P.
Deposit date:2023-08-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains.
Nat Commun, 15, 2024
7SGN
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BU of 7sgn by Molmil
Crystal structure of periplasmic domain of Helicobacter pylori FliL (residues 81 to 183) (crystal form A)
Descriptor: Flagellar protein FliL
Authors:Chan, K.L, Peterson, B, Khan, M.F, Roujeinikova, A.
Deposit date:2021-10-06
Release date:2022-03-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The flagellar motor protein FliL forms a scaffold of circumferentially positioned rings required for stator activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
7SGO
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BU of 7sgo by Molmil
Crystal structure of periplasmic domain of Helicobacter pylori FliL (residues 81 to 183) (crystal form B)
Descriptor: Flagellar protein FliL
Authors:Chan, K.L, Peterson, B, Khan, M.F, Roujeinikova, A.
Deposit date:2021-10-06
Release date:2022-03-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.695 Å)
Cite:The flagellar motor protein FliL forms a scaffold of circumferentially positioned rings required for stator activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
7SGP
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BU of 7sgp by Molmil
Crystal structure of periplasmic domain of Helicobacter pylori FliL (residues 81 to 183) (crystal form C)
Descriptor: Flagellar protein FliL
Authors:Chan, K.L, Peterson, B, Khan, M.F, Roujeinikova, A.
Deposit date:2021-10-06
Release date:2022-03-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The flagellar motor protein FliL forms a scaffold of circumferentially positioned rings required for stator activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
6YSS
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BU of 6yss by Molmil
Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V.
Deposit date:2020-04-23
Release date:2020-08-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Mechanism of ribosome rescue by alternative ribosome-rescue factor B.
Nat Commun, 11, 2020
6YST
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BU of 6yst by Molmil
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V.
Deposit date:2020-04-23
Release date:2020-08-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanism of ribosome rescue by alternative ribosome-rescue factor B.
Nat Commun, 11, 2020
6YSU
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BU of 6ysu by Molmil
Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V.
Deposit date:2020-04-23
Release date:2020-08-19
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanism of ribosome rescue by alternative ribosome-rescue factor B.
Nat Commun, 11, 2020
6YSR
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BU of 6ysr by Molmil
Structure of the P+9 stalled ribosome complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V.
Deposit date:2020-04-23
Release date:2020-08-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of ribosome rescue by alternative ribosome-rescue factor B.
Nat Commun, 11, 2020
7RAI
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BU of 7rai by Molmil
Cryo-EM structure of M4008_N1 Fab in complex with BG505 DS-SOSIP.664 Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Chan, K.-W, Kong, X.P.
Deposit date:2021-07-01
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:A site of vulnerability at V3 crown defined by HIV-1 bNAb M4008_N1.
Nat Commun, 12, 2021
6VY2
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BU of 6vy2 by Molmil
Cryo-EM structure of M1214_N1 Fab in complex with CH505 TF chimeric SOSIP.664 Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein 120, ...
Authors:Chan, K.-W, Kong, X.P.
Deposit date:2020-02-25
Release date:2020-05-06
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.86 Å)
Cite:VSV-Displayed HIV-1 Envelope Identifies Broadly Neutralizing Antibodies Class-Switched to IgG and IgA.
Cell Host Microbe, 27, 2020
5O38
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BU of 5o38 by Molmil
Human Brd2(BD2) mutant in free form
Descriptor: (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol, 3-[(2~{R})-2-oxidanylpropoxy]-2-[[(2~{R})-2-oxidanylpropoxy]methyl]-2-[[(2~{S})-2-oxidanylpropoxy]methyl]propan-1-ol, Bromodomain-containing protein 2, ...
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3I
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BU of 5o3i by Molmil
Human Brd2(BD2) mutant in complex with AL-tBu
Descriptor: (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol, Bromodomain-containing protein 2, CHLORIDE ION, ...
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3D
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BU of 5o3d by Molmil
Human Brd2(BD2) mutant in complex with 9-ET
Descriptor: (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol, Bromodomain-containing protein 2, CHLORIDE ION, ...
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3A
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BU of 5o3a by Molmil
Human Brd2(BD2) mutant in complex with ET
Descriptor: Bromodomain-containing protein 2, methyl (2R)-2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]butanoate
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3E
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BU of 5o3e by Molmil
Human Brd2(BD2) mutant in complex with Me-Am1
Descriptor: (2~{R})-2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-~{N}-ethyl-propanamide, (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol, Bromodomain-containing protein 2, ...
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3G
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BU of 5o3g by Molmil
Human Brd2(BD2) mutant in complex with AL-Am1
Descriptor: (2~{R})-2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-~{N}-ethyl-pent-4-enamide, Bromodomain-containing protein 2
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
5O3H
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BU of 5o3h by Molmil
Human Brd2(BD2) mutant in complex with 9-ME-Am1
Descriptor: (2~{R})-2-[(4~{S})-6-(4-chlorophenyl)-9-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-~{N}-ethyl-propanamide, (2~{S})-1-[(2~{S})-2-oxidanylpropoxy]propan-2-ol, Bromodomain-containing protein 2, ...
Authors:Chan, K.-H, Runcie, A.C, Ciulli, A.
Deposit date:2017-05-23
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Optimization of a "bump-and-hole" approach to allele-selective BET bromodomain inhibition.
Chem Sci, 9, 2018
6DB5
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BU of 6db5 by Molmil
Crystal structure of anti-HIV-1 V3 Fab TA6 in complex with a HIV-1 gp120 V3 peptide from NY5 strain
Descriptor: HIV-1 gp120 V3 peptide from NY5 strain, Human monoclonal anti-HIV-1 gp120 V3 antibody TA6 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody TA6 Fab light chain
Authors:Chan, K.-W, Kong, X.-P.
Deposit date:2018-05-02
Release date:2018-07-11
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.599 Å)
Cite:Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.
J. Virol., 92, 2018
6DB7
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BU of 6db7 by Molmil
Crystal structure of anti-HIV-1 V3 Fab 1334 in complex with a HIV-1 gp120 V3 peptide from MN strain
Descriptor: GLYCEROL, HIV-1 gp120 V3 peptide from MN strain, Human monoclonal anti-HIV-1 gp120 V3 antibody 1334 Fab heavy chain, ...
Authors:Chan, K.-W, Kong, X.-P.
Deposit date:2018-05-02
Release date:2018-07-11
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.
J. Virol., 92, 2018
6DB6
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BU of 6db6 by Molmil
Crystal structure of anti-HIV-1 V3 Fab 311-11D in complex with a HIV-1 gp120 V3 peptide from MN strain
Descriptor: HIV-1 gp120 V3 peptide from MN strain, Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain, ...
Authors:Chan, K.-W, Kong, X.-P.
Deposit date:2018-05-02
Release date:2018-07-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection.
J. Virol., 92, 2018
3PQC
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BU of 3pqc by Molmil
Crystal structure of Thermotoga maritima ribosome biogenesis GTP-binding protein EngB (YsxC/YihA) in complex with GDP
Descriptor: DI(HYDROXYETHYL)ETHER, GUANOSINE-5'-DIPHOSPHATE, Probable GTP-binding protein engB
Authors:Chan, K.H, Wong, K.B.
Deposit date:2010-11-26
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of an essential GTPase, YsxC, from Thermotoga maritima
Acta Crystallogr.,Sect.F, 67, 2011
3PR1
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BU of 3pr1 by Molmil
Crystal structure of apo Thermotoga maritima ribosome biogenesis GTP-binding protein EngB
Descriptor: PHOSPHATE ION, Probable GTP-binding protein engB
Authors:Chan, K.H, Wong, K.B.
Deposit date:2010-11-29
Release date:2011-06-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of an essential GTPase, YsxC, from Thermotoga maritima
Acta Crystallogr.,Sect.F, 67, 2011
2VW9
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BU of 2vw9 by Molmil
Single stranded DNA binding protein complex from Helicobacter pylori
Descriptor: POLY-DT, SINGLE-STRANDED DNA BINDING PROTEIN
Authors:Chan, K.-W, Wang, C.-H, Lee, Y.-J, Sun, Y.-J.
Deposit date:2008-06-18
Release date:2009-06-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Single-Stranded DNA-Binding Protein Complex from Helicobacter Pylori Suggests an Ssdna-Binding Surface.
J.Mol.Biol., 388, 2009
8WT1
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BU of 8wt1 by Molmil
Crystal structure of S9 carboxypeptidase from Geobacillus sterothermophilus
Descriptor: ALANINE, CITRATE ANION, GLYCEROL, ...
Authors:Chandravanshi, K, Kumar, A, Sen, C, Singh, R, Bhange, G.B, Makde, R.D.
Deposit date:2023-10-17
Release date:2024-03-13
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and solution scattering of Geobacillus stearothermophilus S9 peptidase reveal structural adaptations for carboxypeptidase activity.
Febs Lett., 598, 2024
7Q5N
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BU of 7q5n by Molmil
Crystal structure of Chaetomium thermophilum Ahp1-Urm1 complex
Descriptor: Thioredoxin domain-containing protein, Ubiquitin-related modifier 1, ZINC ION
Authors:Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
Deposit date:2021-11-04
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022

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PDB entries from 2024-07-17

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