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PDB: 1279 results

2GEL
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2.05A crystal structure of Salmonella typhimurium YeaZ, form B
Descriptor: Putative Gram negative resuscitation promoting factor
Authors:Nichols, C.E, Stammers, D.K.
Deposit date:2006-03-20
Release date:2006-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Characterization of Salmonella typhimurium YeaZ, an M22 O-Sialoglycoprotein Endopeptidase Homolog
Proteins, 64, 2006
5EKA
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HU DNA-binding protein from Thermus thermophilus
Descriptor: DNA-binding protein HU, GLYCEROL
Authors:Papageorgiou, A, Adam, P, Stavros, P, Nounesis, G, Meijers, R, Petratos, K, Vorgias, C.E.
Deposit date:2015-11-03
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:HU histone-like DNA-binding protein from Thermus thermophilus: structural and evolutionary analyses.
Extremophiles, 20, 2016
5EL2
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Crystal structure of Odorant Binding Protein 1 from Anopheles gambiae (AgamOBP1) with Icaridin (butan-2-yl 2-(2-hydroxyethyl)piperidine-1-carboxylate)
Descriptor: AGAP003309-PA, Icaridin, MAGNESIUM ION
Authors:Drakou, C.E, Tsitsanou, K.E, Zographos, S.E.
Deposit date:2015-11-04
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of the AgamOBP1Icaridin complex reveals alternative binding modes and stereo-selective repellent recognition.
Cell. Mol. Life Sci., 74, 2017
5GAQ
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Cryo-EM structure of the Lysenin Pore
Descriptor: Lysenin
Authors:Savva, C.G, Bokori-Brown, M, Martin, T.G, Titball, R.W, Naylor, C.E, Basak, A.K.
Deposit date:2016-01-05
Release date:2016-04-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of lysenin pore elucidates membrane insertion by an aerolysin family protein
Nat Commun, 7, 2016
2KQ5
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Solution NMR structure of a section of the repeat domain of the type III effector protein PthA
Descriptor: Avirulence protein
Authors:Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C.
Deposit date:2009-10-28
Release date:2010-09-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions
To be Published
2HNY
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Crystal Structure of E138K Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine
Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Ren, J, Nichols, C.E, Stamp, A, Chamberlain, P.P, Stammers, D.K.
Deposit date:2006-07-13
Release date:2006-09-05
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138.
Febs J., 273, 2006
2HFO
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Crystal Structures of the Synechocystis Photoreceptor Slr1694 Reveal Distinct Structural States Related to Signaling
Descriptor: Activator of photopigment and puc expression, FLAVIN MONONUCLEOTIDE
Authors:Yuan, H, Anderson, S, Masuda, S, Dragnea, V, Moffat, K, Bauer, C.E.
Deposit date:2006-06-24
Release date:2006-12-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling.
Biochemistry, 45, 2006
2HND
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Crystal Structure of K101E Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine
Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Ren, J, Nichols, C.E, Stamp, A, Chamberlain, P.P, Stammers, D.K.
Deposit date:2006-07-12
Release date:2006-09-05
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138.
Febs J., 273, 2006
2HO0
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Structure of a Hyper-cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region
Descriptor: CALCIUM ION, Repressor protein cI101-229DM-K192A
Authors:Ndjonka, D, Bell, C.E.
Deposit date:2006-07-13
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a Hyper-cleavable Monomeric Fragment of Phage lambda Repressor Containing the Cleavage Site Region.
J.Mol.Biol., 362, 2006
2GWK
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SpvB ADP-ribosylated actin: orthorhombic crystal form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Stebbins, C.E, Margarit, S.M.
Deposit date:2006-05-04
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A steric antagonism of actin polymerization by a salmonella virulence protein.
Structure, 14, 2006
2GWL
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Crystal structure of the Salmonella SpvB ATR Domain in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 65 kDa virulence protein
Authors:Stebbins, C.E, Margarit, S.M.
Deposit date:2006-05-04
Release date:2006-08-29
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A steric antagonism of actin polymerization by a salmonella virulence protein.
Structure, 14, 2006
2GW8
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Structure of the PII signal transduction protein of Neisseria meningitidis at 1.85 resolution
Descriptor: PII signal transduction protein
Authors:Nichols, C.E, Sainsbury, S, Berrow, N.S, Alderton, D, Stammers, D.K, Owens, R.J, Oxford Protein Production Facility (OPPF)
Deposit date:2006-05-04
Release date:2006-06-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the P(II) signal transduction protein of Neisseria meningitidis at 1.85 A resolution.
Acta Crystallogr.,Sect.F, 62, 2006
2GWJ
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SpvB ADP-ribosylated actin: hexagonal crystal form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Stebbins, C.E, Margarit, S.M.
Deposit date:2006-05-04
Release date:2006-08-29
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A steric antagonism of actin polymerization by a salmonella virulence protein.
Structure, 14, 2006
2HKC
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BU of 2hkc by Molmil
NMR Structure of the IQ-modified Dodecamer CTCGGC[IQ]GCCATC
Descriptor: 3-METHYL-3H-IMIDAZO[4,5-F]QUINOLIN-2-AMINE, 5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3', 5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3'
Authors:Wang, F, DeMuro, N.E, Elmquist, C.E, Stover, J.S, Rizzo, C.J, Stone, M.P.
Deposit date:2006-07-03
Release date:2006-10-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2 bp deletions.
J.Am.Chem.Soc., 128, 2006
2HNF
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Structure of a Hyper-cleavable Monomeric Fragment of Phage lambda Repressor Containing the Cleavage Site Region
Descriptor: CALCIUM ION, Repressor protein cI101-229DM-K192A
Authors:Ndjonka, D, Bell, C.E.
Deposit date:2006-07-12
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a Hyper-cleavable Monomeric Fragment of Phage lambda Repressor Containing the Cleavage Site Region.
J.Mol.Biol., 362, 2006
2HKB
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NMR Structure of the B-DNA Dodecamer CTCGGCGCCATC
Descriptor: 5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3', 5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3'
Authors:Wang, F, DeMuro, N.E, Elmquist, C.E, Stover, J.S, Rizzo, C.J, Stone, M.P.
Deposit date:2006-07-03
Release date:2006-10-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2 bp deletions.
J.Am.Chem.Soc., 128, 2006
2HNZ
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BU of 2hnz by Molmil
Crystal Structure of E138K Mutant HIV-1 Reverse Transcriptase in Complex with PETT-2
Descriptor: 1-[2-(4-ETHOXY-3-FLUOROPYRIDIN-2-YL)ETHYL]-3-(5-METHYLPYRIDIN-2-YL)THIOUREA, PHOSPHATE ION, Reverse transcriptase/ribonuclease H
Authors:Ren, J, Nichols, C.E, Stamp, A, Chamberlain, P.P, Stammers, D.K.
Deposit date:2006-07-13
Release date:2006-09-05
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138.
Febs J., 273, 2006
8F2P
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BU of 8f2p by Molmil
Nef SF2 dimerization mutant bound to Hck SH3
Descriptor: C-terminal core protein, Tyrosine-protein kinase HCK
Authors:Thomas, C.E, Alvarado, J.J, Smithgall, T.E.
Deposit date:2022-11-08
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Neutron Reflectometry and Molecular Simulations Demonstrate HIV-1 Nef Homodimer Formation on Model Lipid Bilayers.
J.Mol.Biol., 435, 2023
7ONF
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BU of 7onf by Molmil
The binding of p-coumaroyl glucose to glycogen phosphorylase reveals the relationship between structural data and effects on cell metabolome
Descriptor: Glycogen phosphorylase, muscle form, INOSINIC ACID, ...
Authors:Tsagkarakou, A.S, Koulas, S.M, Kyriakis, E, Drakou, C.E, Leonidas, D.D.
Deposit date:2021-05-25
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure activity relationship of the binding of p-coumaroyl glucose to glycogen phosphorylase and its effect on hepatic cell metabolic pathways
Eur J Med Chem Rep, 3, 2021
4ZYY
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Human GAR transformylase in complex with GAR and (S)-2-({5-[4-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]-pyrimidin-6-yl)butyl]thiophene-3-carbonyl}amino)pentanedioic acid (AGF118)
Descriptor: (S)-2-({5-[4-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]-pyrimidin-6-yl)butyl]thiophene-3-carbonyl}amino)pentanedioic acid, GLYCINAMIDE RIBONUCLEOTIDE, Trifunctional purine biosynthetic protein adenosine-3
Authors:Deis, S.M, Dann III, C.E.
Deposit date:2015-05-22
Release date:2016-04-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Enzymatic Analysis of Tumor-Targeted Antifolates That Inhibit Glycinamide Ribonucleotide Formyltransferase.
Biochemistry, 55, 2016
4ZZ3
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Human GAR transformylase in complex with GAR and pemetrexed
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE, N-{4-[2-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)ethyl]benzoyl}-L-glutamic acid, Trifunctional purine biosynthetic protein adenosine-3
Authors:Deis, S.M, Dann III, C.E.
Deposit date:2015-05-22
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:6-Substituted Pyrrolo[2,3-d]pyrimidine Thienoyl Regioisomers as Targeted Antifolates for Folate Receptor alpha and the Proton-Coupled Folate Transporter in Human Tumors.
J.Med.Chem., 58, 2015
7P4R
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BU of 7p4r by Molmil
Ultra High Resolution X-ray Structure of Orthorhombic Bovine Pancreatic Ribonuclease at 100K
Descriptor: ETHANOL, Ribonuclease pancreatic, SULFATE ION
Authors:Lisgarten, D.R, Palmer, R.A, Cooper, J.B, Naylor, C.E, Howlin, B.J, Lisgarten, J.N, Najmudin, S, Lobley, C.M.C.
Deposit date:2021-07-12
Release date:2022-07-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Ultra-high resolution X-ray structure of orthorhombic bovine pancreatic Ribonuclease A at 100K.
BMC Chem, 17, 2023
8FFJ
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BU of 8ffj by Molmil
Structure of Zanidatamab bound to HER2
Descriptor: Receptor tyrosine-protein kinase erbB-2, Zanidatamab Heavy Chain A, Zanidatamab Heavy Chain B, ...
Authors:Worrall, L.J, Atkinson, C.E, Sanches, M, Dixit, S, Strynadka, N.C.J.
Deposit date:2022-12-08
Release date:2023-02-22
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Zanidatamab, an Anti-HER2 Biparatopic that Induces Unique Surface HER2 Clusters and Complement-Dependent Cytotoxicity
To be Published
8FON
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BU of 8fon by Molmil
Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
Deposit date:2023-01-02
Release date:2023-03-29
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
J.Biol.Chem., 299, 2023
4ZZ1
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HUMAN GAR TRANSFORMYLASE IN COMPLEX WITH GAR AND (S)-2-({4-[3-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)-PROPYL]-THIOPHENE-2-CARBONYL}-AMINO)-PENTANEDIOIC ACID
Descriptor: (S)-2-({4-[3-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)-propyl]-thiophene-2-carbonyl}-amino)-pentanedioic acid, GLYCINAMIDE RIBONUCLEOTIDE, Trifunctional purine biosynthetic protein adenosine-3
Authors:Deis, S.M, Dann III, C.E.
Deposit date:2015-05-22
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.351 Å)
Cite:6-Substituted Pyrrolo[2,3-d]pyrimidine Thienoyl Regioisomers as Targeted Antifolates for Folate Receptor alpha and the Proton-Coupled Folate Transporter in Human Tumors.
J.Med.Chem., 58, 2015

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