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PDB: 2660 results

3H9Q
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BU of 3h9q by Molmil
Crystal structure of E. coli MccB + SeMet MccA
Descriptor: MccB protein, Microcin C7 ANALOG, SULFATE ION, ...
Authors:Regni, C.A, Roush, R.F, Miller, D, Nourse, A, Walsh, C.T, Schulman, B.A.
Deposit date:2009-04-30
Release date:2009-06-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:How the MccB bacterial ancestor of ubiquitin E1 initiates biosynthesis of the microcin C7 antibiotic.
Embo J., 28, 2009
3K54
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BU of 3k54 by Molmil
Structures of human Bruton's tyrosine kinase in active and inactive conformations suggests a mechanism of activation for TEC family kinases.
Descriptor: N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE, Tyrosine-protein kinase BTK
Authors:Marcotte, D.J, Liu, Y.-T, Arduini, R.M, Hession, C.A, Miatkowski, K, Wildes, C.P, Cullen, P.F, Hopkins, B.T, Mertsching, E, Jenkins, T.J, Romanowski, M.J, Baker, D.P, Silvian, L.F.
Deposit date:2009-10-06
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structures of human Bruton's tyrosine kinase in active and inactive conformations suggest a mechanism of activation for TEC family kinases.
Protein Sci., 19, 2010
3MDF
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BU of 3mdf by Molmil
Crystal structure of the RRM domain of Cyclophilin 33
Descriptor: Peptidyl-prolyl cis-trans isomerase E
Authors:Hom, R.A, Chang, P.Y, Roy, S, Mussleman, C.A, Glass, K.C, Seleznevia, A.I, Gozani, O, Ismagilov, R.F, Cleary, M.L, Kutateladze, T.G.
Deposit date:2010-03-30
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain.
J.Mol.Biol., 400, 2010
3MG2
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BU of 3mg2 by Molmil
Crystal structure of the orange carotenoid protein Y44S mutant from cyanobacteria synechocystis sp. PCC 6803
Descriptor: Orange carotenoid protein, beta,beta-caroten-4-one
Authors:Wilson, A, Kinney, J, Zwart, P.H, Punginelli, C, D'Haen, S, Perreau, F, Klein, M.G, Kirilovsky, D, Kerfeld, C.A.
Deposit date:2010-04-05
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.653 Å)
Cite:Structural determinants underlying photoprotection in the photoactive orange carotenoid protein of cyanobacteria.
J.Biol.Chem., 285, 2010
2BDU
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BU of 2bdu by Molmil
X-Ray Structure of a Cytosolic 5'-Nucleotidase III from Mus Musculus MM.158936
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cytosolic 5'-nucleotidase III
Authors:Wesenberg, G.E, Phillips Jr, G.N, Han, B.W, Bitto, E, Bingman, C.A, Bae, E, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-10-20
Release date:2005-11-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning.
J.Biol.Chem., 281, 2006
2BE4
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BU of 2be4 by Molmil
X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO Dr.36843
Descriptor: hypothetical protein LOC449832
Authors:Wesenberg, G.E, Phillips Jr, G.N, Han, B.W, Bitto, E, Bingman, C.A, Bae, E, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-10-21
Release date:2005-11-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor.
Proteins, 76, 2009
3K34
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BU of 3k34 by Molmil
Human carbonic anhydrase II with a sulfonamide inhibitor
Descriptor: (4-SULFAMOYL-PHENYL)-THIOCARBAMIC ACID O-(2-THIOPHEN-3-YL-ETHYL) ESTER, 4-(HYDROXYMERCURY)BENZOIC ACID, Carbonic anhydrase 2, ...
Authors:Behnke, C.A, Le Trong, I, Merritt, E.A, Teller, D.C, Stenkamp, R.E.
Deposit date:2009-10-01
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Atomic resolution studies of carbonic anhydrase II.
Acta Crystallogr.,Sect.D, 66, 2010
3J9W
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BU of 3j9w by Molmil
Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein bS16, ...
Authors:Sohmen, D, Chiba, S, Shimokawa-Chiba, N, Innis, C.A, Berninghausen, O, Beckmann, R, Ito, K, Wilson, D.N.
Deposit date:2015-03-16
Release date:2015-04-29
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling.
Nat Commun, 6, 2015
3MG3
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BU of 3mg3 by Molmil
Crystal structure of the orange carotenoid protein R155L mutant from cyanobacteria synechocystis sp. PCC 6803
Descriptor: GLYCEROL, Orange carotenoid-binding protein, beta,beta-caroten-4-one
Authors:Wilson, A, Kinney, J, Zwart, P.H, Punginelli, C, D'Haen, S, Perreau, F, Klein, M.G, Kirilovsky, D, Kerfeld, C.A.
Deposit date:2010-04-05
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Structural determinants underlying photoprotection in the photoactive orange carotenoid protein of cyanobacteria.
J.Biol.Chem., 285, 2010
3H7K
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BU of 3h7k by Molmil
Crystal Structure of Arabidopsis thaliana Agmatine Deiminase Complexed with a Covalently Bound Reaction Intermediate
Descriptor: Agmatine deiminase, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Burgie, E.S, Bingman, C.A, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-04-27
Release date:2009-05-26
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural Insights into the Catalytic Mechanism of Arabidopsis thaliana Agmatine Deiminase
to be published
2KZZ
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BU of 2kzz by Molmil
KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY
Descriptor: DNA (5'-D(*GP*CP*TP*T*AP*CP*G)-3'), PROTEIN (DNA POLYMERASE I), ZINC ION
Authors:Brautigam, C.A, Sun, S, Piccirilli, J.A, Steitz, T.A.
Deposit date:1998-07-07
Release date:1999-12-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli.
Biochemistry, 38, 1999
2AZQ
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BU of 2azq by Molmil
Crystal Structure of Catechol 1,2-Dioxygenase from Pseudomonas arvilla C-1
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, FE (III) ION, catechol 1,2-dioxygenase
Authors:Earhart, C.A, Vetting, M.W, Gosu, R, Michaud-Soret, I, Que, L, Ohlendorf, D.H.
Deposit date:2005-09-12
Release date:2005-10-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of catechol 1,2-dioxygenase from Pseudomonas arvilla
Biochem.Biophys.Res.Commun., 338, 2005
2GBQ
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BU of 2gbq by Molmil
SOLUTION NMR STRUCTURE OF THE GRB2 N-TERMINAL SH3 DOMAIN COMPLEXED WITH A TEN-RESIDUE PEPTIDE DERIVED FROM SOS DIRECT REFINEMENT AGAINST NOES, J-COUPLINGS, AND 1H AND 13C CHEMICAL SHIFTS, 15 STRUCTURES
Descriptor: GRB2, SOS-1
Authors:Wittekind, M, Mapelli, C, Lee, V, Goldfarb, V, Friedrichs, M.S, Meyers, C.A, Mueller, L.
Deposit date:1996-12-23
Release date:1997-09-04
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the Grb2 N-terminal SH3 domain complexed with a ten-residue peptide derived from SOS: direct refinement against NOEs, J-couplings and 1H and 13C chemical shifts.
J.Mol.Biol., 267, 1997
2AXU
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BU of 2axu by Molmil
Structure of PrgX
Descriptor: PrgX
Authors:Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.K, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2005-09-06
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.
Proc.Natl.Acad.Sci.Usa, 102, 2005
3GNA
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BU of 3gna by Molmil
Crystal structure of the RAG1 nonamer-binding domain with DNA
Descriptor: 5'-D(*AP*CP*TP*TP*AP*AP*CP*AP*AP*AP*AP*AP*CP*C)-3', 5'-D(*TP*GP*GP*TP*TP*TP*TP*TP*GP*TP*TP*AP*AP*G)-3', V(D)J recombination-activating protein 1
Authors:Yin, F.F, Bailey, S, Innis, C.A, Steitz, T.A, Schatz, D.G.
Deposit date:2009-03-16
Release date:2009-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis.
Nat.Struct.Mol.Biol., 16, 2009
3GEN
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BU of 3gen by Molmil
The 1.6 A crystal structure of human bruton's tyrosine kinase bound to a pyrrolopyrimidine-containing compound
Descriptor: 4-Amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl-cyclopentane, Tyrosine-protein kinase BTK
Authors:Marcotte, D.J, Liu, Y.T, Arduini, R.M, Hession, C.A, Miatkowski, K, Wildes, C.P, Cullen, P.F, Hopkins, B, Mertsching, E, Jenkins, T.J, Romanowski, M.J, Baker, D.P, Silvian, L.F.
Deposit date:2009-02-25
Release date:2010-01-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of human Bruton's tyrosine kinase in active and inactive conformations suggest a mechanism of activation for TEC family kinases.
Protein Sci., 19, 2010
3GAN
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BU of 3gan by Molmil
Crystal structure of gene product from Arabidopsis thaliana At3g22680 with bound suramin
Descriptor: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFON IC ACID, CHLORIDE ION, Uncharacterized protein At3g22680
Authors:Burgie, E.S, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-02-17
Release date:2009-03-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of gene product from Arabidopsis thaliana At3g22680 with bound suramin
To be Published
3GI4
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BU of 3gi4 by Molmil
Crystal structure of protease inhibitor, KB60 in complex with wild type HIV-1 protease
Descriptor: 5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-2-oxo-3-[3-(tr ifluoromethyl)phenyl]-5-oxazolidinecarboxamide, ACETATE ION, PHOSPHATE ION, ...
Authors:Nalam, M.N.L, Schiffer, C.A.
Deposit date:2009-03-05
Release date:2010-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Evaluating the substrate-envelope hypothesis: structural analysis of novel HIV-1 protease inhibitors designed to be robust against drug resistance.
J.Virol., 84, 2010
3H5A
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BU of 3h5a by Molmil
Crystal structure of E. coli MccB
Descriptor: MccB protein, ZINC ION
Authors:Regni, C.A, Roush, R.F, Miller, D, Nourse, A, Walsh, C.T, Schulman, B.A.
Deposit date:2009-04-21
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:How the MccB bacterial ancestor of ubiquitin E1 initiates biosynthesis of the microcin C7 antibiotic.
Embo J., 28, 2009
2KMN
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BU of 2kmn by Molmil
Solution structure of peptide deformylase complexed with actinonin
Descriptor: ACTINONIN, Peptide deformylase, ZINC ION
Authors:McElroy, C.A, Amero, C.D, Byerly, D.W, Foster, M.P.
Deposit date:2009-08-01
Release date:2009-08-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of Peptide Deformylase complexed with Actinonin
To be Published
2AWI
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BU of 2awi by Molmil
Structure of PrgX Y153C mutant
Descriptor: PrgX
Authors:Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.k, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2005-09-01
Release date:2005-12-06
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.
Proc.Natl.Acad.Sci.Usa, 102, 2005
3HL6
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BU of 3hl6 by Molmil
Staphylococcus aureus pathogenicity island 3 ORF9 protein
Descriptor: CHLORIDE ION, Pathogenicity island protein
Authors:Kruse, A.C, Huseby, M, Shi, K, Digre, J, Schlievert, P.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2009-05-26
Release date:2010-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional studies of a pathogenicity island protein from Staphylococcus aureus
To be Published
2AGJ
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BU of 2agj by Molmil
Crystal Structure of a glycosylated Fab from an IgM cryoglobulin with properties of a natural proteolytic antibody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Yvo Fab, Heavy Chain, ...
Authors:Ramsland, P.A, Terzyan, S.S, Cloud, G, Bourne, C.R, Farrugia, W, Tribbick, G, Geysen, H.M, Moomaw, C.R, Slaughter, C.A, Edmundson, A.B.
Deposit date:2005-07-27
Release date:2006-05-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a glycosylated Fab from an IgM cryoglobulin with properties of a natural proteolytic antibody
Biochem.J., 395, 2006
2AW6
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BU of 2aw6 by Molmil
Structure of a bacterial peptide pheromone/receptor complex and its mechanism of gene regulation
Descriptor: PrgX, peptide
Authors:Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.K, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2005-08-31
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2APJ
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BU of 2apj by Molmil
X-Ray Structure of Protein from Arabidopsis Thaliana AT4G34215 at 1.6 Angstrom Resolution
Descriptor: Putative Esterase
Authors:Wesenberg, G.E, Phillips Jr, G.N, Mccoy, J.G, Bitto, E, Bingman, C.A, Allard, S.T, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-08-16
Release date:2005-08-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structure at 1.6 Angstroms resolution of the protein product of the At4g34215 gene from Arabidopsis thaliana.
Acta Crystallogr.,Sect.D, 61, 2005

226707

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