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PDB: 51 件
1AFX
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UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES
分子名称: RNA (5'-R(*GP*GP*UP*GP*UP*GP*AP*AP*CP*AP*CP*C)-3')
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1997-03-15
公開日1997-05-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1B36
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BU of 1b36 by Molmil
SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES
分子名称: RNA (RNA LOOP B)
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1998-12-17
公開日1998-12-23
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1TLR
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BU of 1tlr by Molmil
SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
分子名称: RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3')
著者Butcher, S.E, Dieckmann, T, Feigon, J.
登録日1997-09-11
公開日1997-11-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of a GAAA tetraloop receptor RNA.
EMBO J., 16, 1997
6E7L
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BU of 6e7l by Molmil
Structure of a dimerized UUCG motif
分子名称: RNA (5'-R(*GP*GP*GP*CP*UP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*UP*GP*CP*CP*C)-3')
著者Montemayor, E.J, Butcher, S.E.
登録日2018-07-26
公開日2019-07-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking.
Acta Crystallogr.,Sect.F, 75, 2019
8VJT
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BU of 8vjt by Molmil
Structure of the poly-UG quadruplex (GUGUGU)4
分子名称: POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*GP*U)-3'), SODIUM ION
著者Bingman, C.A, Montemayor, E.J, Roschdi, S, Nomura, Y, Butcher, S.E.
登録日2024-01-08
公開日2024-10-16
実験手法X-RAY DIFFRACTION (1.052 Å)
主引用文献Self-assembly and condensation of intermolecular poly(UG) RNA quadruplexes.
Nucleic Acids Res., 2024
2ADT
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BU of 2adt by Molmil
NMR structure of a 30 kDa GAAA tetraloop-receptor complex.
分子名称: 43-MER
著者Davis, J.H, Tonelli, M, Scott, L.G, Jaeger, L, Williamson, J.R, Butcher, S.E.
登録日2005-07-20
公開日2005-07-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop-Receptor Complex
J.Mol.Biol., 351, 2005
8TNS
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BU of 8tns by Molmil
Solution structure of poly(UG) RNA (GU)12 G-quadruplex
分子名称: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3')
著者Escobar, C.A, Petersen, R, Butcher, S.E.
登録日2023-08-02
公開日2023-11-15
最終更新日2024-05-15
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献Solution Structure of Poly(UG) RNA.
J.Mol.Biol., 435, 2023
4N0T
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BU of 4n0t by Molmil
Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution
分子名称: SULFATE ION, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA
著者Montemayor, E.J, Curran, E.C, Liao, H, Andrews, K.L, Treba, C.N, Butcher, S.E, Brow, D.A.
登録日2013-10-02
公開日2014-05-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution.
Nat.Struct.Mol.Biol., 21, 2014
6ASO
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Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA
分子名称: MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ...
著者Montemayor, E.J, Brow, D.A, Butcher, S.E.
登録日2017-08-25
公開日2018-05-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun, 9, 2018
5UQJ
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Structure of yeast Usb1
分子名称: ACETATE ION, GLYCEROL, SULFATE ION, ...
著者Didychuk, A.L, Montemayor, E.J, Butcher, S.E.
登録日2017-02-08
公開日2017-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
5TF6
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Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
分子名称: CHLORIDE ION, GLYCEROL, POTASSIUM ION, ...
著者Montemayor, E.J, Brow, D.A, Butcher, S.E.
登録日2016-09-24
公開日2017-01-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol, 73, 2017
5V1M
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Structure of human Usb1 with uridine 5'-monophosphate
分子名称: CHLORIDE ION, GLYCEROL, U6 snRNA phosphodiesterase, ...
著者Montemayor, E.J, Didychuk, A.L, Butcher, S.E.
登録日2017-03-02
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities.
Nat Commun, 8, 2017
7MKT
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BU of 7mkt by Molmil
Crystal structure of r(GU)11G-NMM complex
分子名称: N-METHYLMESOPORPHYRIN, POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3')
著者Bingman, C.A, Roschdi, S, Nomura, Y, Butcher, S.E.
登録日2021-04-26
公開日2022-11-02
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献An atypical RNA quadruplex marks RNAs as vectors for gene silencing.
Nat.Struct.Mol.Biol., 29, 2022
1XHP
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BU of 1xhp by Molmil
Solution Structure of the Extended U6 ISL as Observed in the U2/U6 complex from Saccharomyces cerevisiae
分子名称: U6 snRNA
著者Sashital, D.G, Cornilescu, G, Butcher, S.E.
登録日2004-09-20
公開日2004-11-23
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献U2-U6 RNA folding reveals a group II intron-like domain and a four-helix junction
Nat.Struct.Mol.Biol., 11, 2004
1Z2J
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BU of 1z2j by Molmil
Solution structure of the HIV-1 frameshift inducing element
分子名称: HIV-1 frameshift site RNA
著者Staple, D.W, Butcher, S.E.
登録日2005-03-08
公開日2005-06-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element.
J.Mol.Biol., 349, 2005
6D31
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BU of 6d31 by Molmil
Structure of human Usb1 with adenosine 5'-monophosphate
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6D2Z
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Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant
分子名称: 5'-R(UP*A)-3'), CHLORIDE ION, U6 snRNA phosphodiesterase
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6D30
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Structure of human Usb1 with uridine-uridine, inactive H208Q mutant
分子名称: CHLORIDE ION, RNA (5'-R(UP*U)-3'), U6 snRNA phosphodiesterase
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2018-04-14
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6PPN
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BU of 6ppn by Molmil
Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA
分子名称: Mimic of unprocessed U6 snRNA, Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
1SY4
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BU of 1sy4 by Molmil
Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS)
分子名称: U6 Intramolecular Stem-Loop RNA
著者Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
登録日2004-03-31
公開日2004-04-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003
6PFQ
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Structure of Kluyveromyces marxianus Usb1
分子名称: GLYCEROL, Uncharacterized protein YLR132C
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2019-06-21
公開日2019-12-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1.
Nucleic Acids Res., 48, 2020
1SYZ
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BU of 1syz by Molmil
Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7
分子名称: U6 INTRAMOLECULAR STEM-LOOP RNA
著者Reiter, N.J, Blad, H, Abildgaard, F, Butcher, S.E.
登録日2004-04-02
公開日2004-11-09
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Dynamics in the U6 RNA Intramolecular Stem-Loop: A Base Flipping Conformational Change.
Biochemistry, 43, 2004
6PGL
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Structure of Kluyveromyces marxianus Usb1 with uridine monophosphate
分子名称: 1,2-ETHANEDIOL, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, GLYCEROL, ...
著者Nomura, Y, Montemayor, E.J, Butcher, S.E.
登録日2019-06-24
公開日2019-12-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.845 Å)
主引用文献Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1.
Nucleic Acids Res., 48, 2020
6PPQ
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Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' adenosine
分子名称: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*UP*UP*UP*UP*UP*A)-3'), ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
6PPV
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Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' guanosine
分子名称: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*AP*UP*UP*UP*UP*G)-3'), ...
著者Montemayor, E.J, Butcher, S.E.
登録日2019-07-08
公開日2020-06-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020

 

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