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PDB: 97 results

6E7L
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BU of 6e7l by Molmil
Structure of a dimerized UUCG motif
Descriptor: RNA (5'-R(*GP*GP*GP*CP*UP*GP*CP*AP*CP*UP*UP*CP*GP*GP*UP*GP*CP*UP*GP*CP*CP*C)-3')
Authors:Montemayor, E.J, Butcher, S.E.
Deposit date:2018-07-26
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking.
Acta Crystallogr.,Sect.F, 75, 2019
1UVI
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The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 6nt RNA
Descriptor: 5'-R(*UP*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
1UVN
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The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 ca2+ inhibition complex
Descriptor: 5'-R(*UP*UP*UP*UP*CP*CP)-3', CALCIUM ION, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
1UVL
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The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5nt RNA. Conformation B
Descriptor: 5'-R(*UP*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
4KFS
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BU of 4kfs by Molmil
Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, CITRATE ANION, Genome packaging NTPase B204, ...
Authors:Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S.
Deposit date:2013-04-27
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.946 Å)
Cite:The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2.
J.Virol., 87, 2013
1UVJ
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The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 7nt RNA
Descriptor: 5'-R(*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
1SY4
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BU of 1sy4 by Molmil
Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS)
Descriptor: U6 Intramolecular Stem-Loop RNA
Authors:Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
Deposit date:2004-03-31
Release date:2004-04-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003
1SYZ
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Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7
Descriptor: U6 INTRAMOLECULAR STEM-LOOP RNA
Authors:Reiter, N.J, Blad, H, Abildgaard, F, Butcher, S.E.
Deposit date:2004-04-02
Release date:2004-11-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Dynamics in the U6 RNA Intramolecular Stem-Loop: A Base Flipping Conformational Change.
Biochemistry, 43, 2004
1HI8
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RNA dependent RNA polymerase from dsRNA bacteriophage phi6
Descriptor: MAGNESIUM ION, P2 PROTEIN
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2001-01-03
Release date:2001-03-27
Last modified:2019-09-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
2W0C
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BU of 2w0c by Molmil
X-ray structure of the entire lipid-containing bacteriophage PM2
Descriptor: CALCIUM ION, MAJOR CAPSID PROTEIN P2, PROTEIN 2, ...
Authors:Abrescia, N.G.A, Grimes, J.M, Kivela, H.M, Assenberg, R, Sutton, G.C, Butcher, S.J, Bamford, J.K.H, Bamford, D.H, Stuart, D.I.
Deposit date:2008-08-13
Release date:2008-09-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (7 Å)
Cite:Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2
Mol.Cell, 31, 2008
1HI0
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RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex
Descriptor: DNA (5'-(*TP*TP*TP*CP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2000-12-31
Release date:2001-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
1NZ1
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BU of 1nz1 by Molmil
Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80
Descriptor: SP U6 Intramolecular Stem-Loop RNA
Authors:Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
Deposit date:2003-02-14
Release date:2003-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003
1HHS
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BU of 1hhs by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6
Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2000-12-28
Release date:2001-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
1HHT
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BU of 1hht by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template
Descriptor: DNA (5'-(*TP*TP*TP*CP*C)-3'), MANGANESE (II) ION, P2 PROTEIN
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2000-12-28
Release date:2001-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
1HB7
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BU of 1hb7 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1 SUS1 MUTANT CAPSID
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-12
Release date:2001-12-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions.
Structure, 9, 2001
1HI1
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BU of 1hi1 by Molmil
RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus bound NTP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, P2 PROTEIN
Authors:Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I.
Deposit date:2001-01-01
Release date:2001-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:A Mechanism for Initiating RNA-Dependent RNA Polymerization
Nature, 410, 2001
2GO9
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BU of 2go9 by Molmil
RRM domains 1 and 2 of Prp24 from S. cerevisiae
Descriptor: U4/U6 snRNA-associated splicing factor PRP24
Authors:Reiter, N.J, Lee, D.H, Tonelli, M, Kwan, S.K, Brow, D.A, Butcher, S.E.
Deposit date:2006-04-12
Release date:2007-02-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure and interactions of the first three RNA recognition motifs of splicing factor prp24.
J.Mol.Biol., 367, 2007
1GW7
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BU of 1gw7 by Molmil
QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-13
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Minor Proteins, Mobile Arms, and Membrane-Capsid Interactions in Bacteriophage Prd1 Capsid Assembly
Nat.Struct.Biol., 9, 2002
1GW8
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quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-15
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13.3 Å)
Cite:Minor Proteins, Mobile Arms and Membrane-Capsid Interactions in the Bacteriophage Prd1 Capsid.
Nat.Struct.Biol., 9, 2002
1HB9
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BU of 1hb9 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-13
Release date:2001-12-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (25 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions
Structure, 9, 2001
6D31
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BU of 6d31 by Molmil
Structure of human Usb1 with adenosine 5'-monophosphate
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
Authors:Nomura, Y, Montemayor, E.J, Butcher, S.E.
Deposit date:2018-04-14
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
6D30
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BU of 6d30 by Molmil
Structure of human Usb1 with uridine-uridine, inactive H208Q mutant
Descriptor: CHLORIDE ION, RNA (5'-R(UP*U)-3'), U6 snRNA phosphodiesterase
Authors:Nomura, Y, Montemayor, E.J, Butcher, S.E.
Deposit date:2018-04-14
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
1NC0
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BU of 1nc0 by Molmil
U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae
Descriptor: U80G U6 RNA Intramolecular Stem-Loop
Authors:Sashital, D.G, Allmann, A.M, Van Doren, S, Butcher, S.E.
Deposit date:2002-12-04
Release date:2003-02-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for a Lethal Mutation in U6 RNA
Biochemistry, 42, 2003
6D2Z
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Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant
Descriptor: 5'-R(UP*A)-3'), CHLORIDE ION, U6 snRNA phosphodiesterase
Authors:Nomura, Y, Montemayor, E.J, Butcher, S.E.
Deposit date:2018-04-14
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res., 46, 2018
1W8X
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Structural analysis of PRD1
Descriptor: MAJOR CAPSID PROTEIN (PROTEIN P3), PROTEIN P16, PROTEIN P30, ...
Authors:Abrescia, N.G.A, Cockburn, J.J.B, Grimes, J.M, Sutton, G.C, Diprose, J.M, Butcher, S.J, Fuller, S.D, San Martin, C, Burnett, R.M, Stuart, D.I, Bamford, D.H, Bamford, J.K.H.
Deposit date:2004-10-01
Release date:2004-11-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Insights Into Assembly from Structural Analysis of Bacteriophage Prd1.
Nature, 432, 2004

221716

數據於2024-06-26公開中

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