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PDB: 251 results

3GB6
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Structure of Giardia fructose-1,6-biphosphate aldolase D83A mutant in complex with fructose-1,6-bisphosphate
Descriptor: 1,6-di-O-phosphono-D-fructose, Fructose-bisphosphate aldolase, ZINC ION
Authors:Galkin, A, Herzberg, O.
Deposit date:2009-02-18
Release date:2009-03-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase.
Biochemistry, 48, 2009
1KGF
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BU of 1kgf by Molmil
STRUCTURE OF BETA-LACTAMASE ASN 170 GLN MUTANT
Descriptor: BETA-LACTAMASE
Authors:Chen, C.C.H, Zawadzke, L.E, Herzberg, O.
Deposit date:1996-10-17
Release date:1997-03-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Elimination of the hydrolytic water molecule in a class A beta-lactamase mutant: crystal structure and kinetics.
Biochemistry, 35, 1996
1KGE
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STRUCTURE OF BETA-LACTAMASE ASN 170 MET MUTANT
Descriptor: BETA-LACTAMASE
Authors:Chen, C.C.H, Zawadzke, L.E, Herzberg, O.
Deposit date:1996-10-17
Release date:1997-04-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Elimination of the hydrolytic water molecule in a class A beta-lactamase mutant: crystal structure and kinetics.
Biochemistry, 35, 1996
3GAY
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Structure of Giardia fructose-1,6-biphosphate aldolase in complex with tagatose-1,6-biphosphate
Descriptor: 1,6-di-O-phosphono-D-tagatose, Fructose-bisphosphate aldolase, ZINC ION
Authors:Galkin, A, Herzberg, O.
Deposit date:2009-02-18
Release date:2009-03-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase.
Biochemistry, 48, 2009
2QDS
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BU of 2qds by Molmil
Crystal Structure of the Zinc Carbapenemase CPHA in Complex with the Inhibitor D-Captopril
Descriptor: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID, Beta-lactamase, GLYCEROL, ...
Authors:Garau, G, Dideberg, O.
Deposit date:2007-06-21
Release date:2007-07-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural basis for the broad-spectrum inhibition of metallo-beta-lactamases by thiols.
Org.Biomol.Chem., 6, 2008
3US2
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BU of 3us2 by Molmil
Structure of p63 DNA Binding Domain in Complex with a 19 Base Pair A/T Rich Response Element Containing Two Half Sites with a Single Base Pair Overlap
Descriptor: 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3', 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*TP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3', Tumor protein 63, ...
Authors:Chen, C, Herzberg, O.
Deposit date:2011-11-22
Release date:2012-02-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Pliable DNA Conformation of Response Elements Bound to Transcription Factor p63.
J.Biol.Chem., 287, 2012
1DJC
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BU of 1djc by Molmil
STRUCTURE OF BETA-LACTAMASE PRECURSOR, S70A MUTANT, AT 120K
Descriptor: BETA-LACTAMASE, SULFATE ION
Authors:Chen, C.C.H, Herzberg, O.
Deposit date:1996-08-13
Release date:1997-03-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and kinetics of the beta-lactamase mutants S70A and K73H from Staphylococcus aureus PC1.
Biochemistry, 35, 1996
2QDT
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Structural Basis for the Broad-Spectrum Inhibition of Metallo-{Beta}-Lactamases: L1- IS38 Complex
Descriptor: Metallo-beta-lactamase L1, N-(3-MERCAPTOPROPANOYL)-D-ALANINE, SULFATE ION, ...
Authors:Garau, G, Dideberg, O.
Deposit date:2007-06-21
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the broad-spectrum inhibition of metallo-beta-lactamases by thiols.
Org.Biomol.Chem., 6, 2008
3GRF
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BU of 3grf by Molmil
X-ray Structure of Ornithine Transcarbamoylase from Giardia lamblia
Descriptor: NICKEL (II) ION, Ornithine carbamoyltransferase
Authors:Galkin, A, Herzberg, O.
Deposit date:2009-03-25
Release date:2009-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia.
Proteins, 76, 2009
1OME
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BU of 1ome by Molmil
CRYSTAL STRUCTURE OF THE OMEGA LOOP DELETION MUTANT (RESIDUES 163-178 DELETED) OF BETA-LACTAMASE FROM STAPHYLOCOCCUS AUREUS PC1
Descriptor: BETA-LACTAMASE, CHLORIDE ION
Authors:Banerjee, S, Pieper, U, Herzberg, O.
Deposit date:1998-02-09
Release date:1998-05-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase.
Biochemistry, 37, 1998
1PCH
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BU of 1pch by Molmil
STRUCTURAL EVIDENCE FOR THE EVOLUTIONARY DIVERGENCE OF MYCOPLASMA FROM GRAM-POSITIVE BACTERIA: THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN
Descriptor: PHOSPHOCARRIER PROTEIN, SULFATE ION
Authors:Pieper, U, Herzberg, O.
Deposit date:1995-07-11
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural evidence for the evolutionary divergence of mycoplasma from gram-positive bacteria: the histidine-containing phosphocarrier protein.
Structure, 3, 1995
1WRA
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BU of 1wra by Molmil
Crystal Structure of Phosphorylcholine Esterase Domain of the Virulence Factor Choline Binding Protein E from Streptococcus Pneumoniae
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, FE (III) ION, ...
Authors:Garau, G, Dideberg, O.
Deposit date:2004-10-13
Release date:2005-05-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein e from streptococcus pneumoniae: new structural features among the metallo-beta-lactamase superfamily
J.Biol.Chem., 280, 2005
2UAG
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BU of 2uag by Molmil
UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE), ...
Authors:Bertrand, J, Fanchon, E, Dideberg, O.
Deposit date:1999-02-23
Release date:2000-02-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Determination of the MurD mechanism through crystallographic analysis of enzyme complexes.
J.Mol.Biol., 289, 1999
1PIO
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BU of 1pio by Molmil
AN ENGINEERED STAPHYLOCOCCUS AUREUS PC1 BETA-LACTAMASE THAT HYDROLYSES THIRD GENERATION CEPHALOSPORINS
Descriptor: BETA-LACTAMASE
Authors:Zawadzke, L.E, Herzberg, O.
Deposit date:1995-10-11
Release date:1996-03-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An engineered Staphylococcus aureus PC1 beta-lactamase that hydrolyses third-generation cephalosporins.
Protein Eng., 8, 1995
1X8H
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BU of 1x8h by Molmil
The Mono-Zinc Carbapenemase CphA (N220G mutant) Shows a Zn(II)- NH2 ARG Coordination
Descriptor: Beta-lactamase, CARBONATE ION, GLYCEROL, ...
Authors:Garau, G, Dideberg, O.
Deposit date:2004-08-18
Release date:2004-12-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Metallo-beta-lactamase Enzyme in Action: Crystal Structures of the Monozinc Carbapenemase CphA and its Complex with Biapenem
J.Mol.Biol., 345, 2005
1BMC
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BU of 1bmc by Molmil
STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
Descriptor: METALLO-BETA-LACTAMASE, ZINC ION
Authors:Carfi, A, Pares, S, Duee, E, Dideberg, O.
Deposit date:1995-06-16
Release date:1996-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The 3-D structure of a zinc metallo-beta-lactamase from Bacillus cereus reveals a new type of protein fold.
EMBO J., 14, 1995
2C5W
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BU of 2c5w by Molmil
PENICILLIN-BINDING PROTEIN 1A (PBP-1A) ACYL-ENZYME COMPLEX (CEFOTAXIME) FROM STREPTOCOCCUS PNEUMONIAE
Descriptor: 1,2-ETHANEDIOL, CEFOTAXIME, C3' cleaved, ...
Authors:Contreras-Martel, C, Job, V, Di Guilmi, A.-M, Vernet, T, Dideberg, O, Dessen, A.
Deposit date:2005-11-02
Release date:2005-12-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal Structure of Penicillin-Binding Protein 1A (Pbp1A) Reveals a Mutational Hotspot Implicated in Beta-Lactam Resistance in Streptococcus Pneumoniae.
J.Mol.Biol., 355, 2006
1KC7
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Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate
Descriptor: MAGNESIUM ION, PHOSPHONOPYRUVATE, SULFATE ION, ...
Authors:Chen, C.C, Howard, A, Herzberg, O.
Deposit date:2001-11-07
Release date:2002-01-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Pyruvate site of pyruvate phosphate dikinase: crystal structure of the enzyme-phosphonopyruvate complex, and mutant analysis
Biochemistry, 41, 2002
8CPL
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YZw2 a scaffold for cryo-EM of small proteins of interest
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Putrescine aminotransferase,Immunoglobulin G-binding protein A
Authors:Moche, M, Friberg, O, Nygren, P.A, Nilvebrant, J.
Deposit date:2023-03-03
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.605 Å)
Cite:Engineered imaging scaffolds for cryo-EM of small proteins of interest.
To Be Published
1DYP
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BU of 1dyp by Molmil
1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE-3,6-ANHYDRO-D-GALACTOSE 4 GALACTOHYDROLASE
Descriptor: CADMIUM ION, CHLORIDE ION, KAPPA-CARRAGEENASE
Authors:Michel, G, Chantalat, L, Dideberg, O.
Deposit date:2000-02-04
Release date:2001-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:The Kappa-Carrageenase of P. Carrageenovora Features a Tunnel-Shaped Active Site: A Novel Insight in the Evolution of Clan-B Glycoside Hydrolases
Structure, 9, 2001
1L9Y
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BU of 1l9y by Molmil
FEZ-1-Y228A, A Mutant of the Metallo-beta-lactamase from Legionella gormanii
Descriptor: CHLORIDE ION, FEZ-1 b-lactamase, GLYCEROL, ...
Authors:Garcia-Saez, I, Mercuri, P.S, Galleni, M, Dideberg, O.
Deposit date:2002-03-27
Release date:2003-07-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Three-dimensional Structure of FEZ-1, a Monomeric Subclass B3 Metallo-beta-lactamase from Fluoribacter gormanii, in Native Form and in Complex with -Captopril
J.Mol.Biol., 325, 2003
1XG3
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Crystal structure of the C123S 2-methylisocitrate lyase mutant from Escherichia coli in complex with the reaction product, Mg(II)-pyruvate and succinate
Descriptor: MAGNESIUM ION, PYRUVIC ACID, Probable methylisocitrate lyase, ...
Authors:Liu, S, Lu, Z, Han, Y, Melamud, E, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2004-09-16
Release date:2005-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of 2-Methylisocitrate Lyase in Complex with Product and with Isocitrate Inhibitor Provide Insight into Lyase Substrate Specificity, Catalysis and Evolution
Biochemistry, 44, 2005
3ZOG
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Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound 1-Cyclohex-2-enone
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-BINDING PROTEIN, cyclohex-2-en-1-one
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
Deposit date:2013-02-21
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
1NO5
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BU of 1no5 by Molmil
Structure of HI0073 from Haemophilus influenzae, the nucleotide binding domain of the HI0073/HI0074 two protein nucleotidyl transferase.
Descriptor: GLYCEROL, Hypothetical protein HI0073, SODIUM ION, ...
Authors:Lehmann, C, Pullalarevu, S, Galkin, A, Krajewski, W, Willis, M.A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-01-15
Release date:2004-03-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of HI0073 from Haemophilus influenzae, the nucleotide-binding domain of a two-protein nucleotidyl transferase
Proteins, 60, 2005
3FA3
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Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, trigonal crystal form
Descriptor: 2,2-difluoro-3,3-dihydroxybutanedioic acid, 2,3-dimethylmalate lyase, GLYCEROL, ...
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
J.Mol.Biol., 386, 2009

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