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PDB: 251 results

1UAG
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UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
Descriptor: SULFATE ION, UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE, URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE
Authors:Bertrand, J, Fanchon, E, Dideberg, O.
Deposit date:1997-03-13
Release date:1998-03-18
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase from Escherichia coli.
EMBO J., 16, 1997
1KGD
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Crystal Structure of the Guanylate Kinase-like Domain of Human CASK
Descriptor: FORMIC ACID, PERIPHERAL PLASMA MEMBRANE CASK
Authors:Li, Y, Spangenberg, O, Paarmann, I, Konrad, M, Lavie, A.
Deposit date:2001-11-26
Release date:2001-12-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.314 Å)
Cite:Structural basis for nucleotide-dependent regulation of membrane-associated guanylate kinase-like domains.
J.Biol.Chem., 277, 2002
1MW5
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Structure of HI1480 from Haemophilus influenzae
Descriptor: HYPOTHETICAL PROTEIN HI1480
Authors:Lim, K, Sarikaya, E, Howard, A, Galkin, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2002-09-27
Release date:2003-11-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues
PROTEINS: STRUCT.,FUNCT.,GENET., 56, 2004
2UWX
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Active site restructuring regulates ligand recognition in class A penicillin-binding proteins
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, PENICILLIN-BINDING PROTEIN 1B, ...
Authors:Macheboeuf, P, DiGuilmi, A.M, Job, V, Vernet, T, Dideberg, O, Dessen, A.
Deposit date:2007-03-23
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Active Site Restructuring Regulates Ligand Recognition in Class a Penicillin-Binding Proteins
Proc.Natl.Acad.Sci.USA, 102, 2005
1XG4
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Crystal Structure of the C123S 2-Methylisocitrate Lyase Mutant from Escherichia coli in complex with the inhibitor isocitrate
Descriptor: ISOCITRIC ACID, MAGNESIUM ION, Probable methylisocitrate lyase
Authors:Liu, S, Lu, Z, Han, Y, Melamud, E, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2004-09-16
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of 2-Methylisocitrate Lyase in Complex with Product and with Isocitrate Inhibitor Provide Insight into Lyase Substrate Specificity, Catalysis and Evolution
Biochemistry, 44, 2005
1S2W
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Crystal structure of phosphoenolpyruvate mutase in high ionic strength
Descriptor: Phosphoenolpyruvate phosphomutase, SULFATE ION
Authors:Liu, S, Lu, Z, Han, Y, Jia, Y, Howard, A, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2004-01-11
Release date:2004-05-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Conformational Flexibility of PEP Mutase
Biochemistry, 43, 2004
1S2T
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Crystal Structure Of Apo Phosphoenolpyruvate Mutase
Descriptor: Phosphoenolpyruvate phosphomutase
Authors:Liu, S, Lu, Z, Han, Y, Jia, Y, Howard, A, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2004-01-11
Release date:2004-05-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational Flexibility of PEP Mutase
Biochemistry, 43, 2004
1MWW
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THE STRUCTURE OF THE HYPOTHETICAL PROTEIN HI1388.1 FROM HAEMOPHILUS INFLUENZAE REVEALS A TAUTOMERASE/MIF FOLD
Descriptor: CHLORIDE ION, GLUTAMIC ACID, HYPOTHETICAL PROTEIN HI1388.1
Authors:Lehmann, C, Pullalarevu, S, Krajewski, W, Galkin, A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2002-10-01
Release date:2003-11-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structure of the Hypothetical Protein HI1388.1 from Haemophilus influenzae
To be Published
1NMN
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Structure of yqgF from Escherichia coli, a hypothetical protein
Descriptor: Hypothetical protein yqgF
Authors:Galkin, A, Sarikaya, E, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-01-10
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of yqgF from Escherichia coli, a hypothetical protein
To be Published
1ZLP
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Petal death protein PSR132 with cysteine-linked glutaraldehyde forming a thiohemiacetal adduct
Descriptor: 5-HYDROXYPENTANAL, MAGNESIUM ION, petal death protein
Authors:Teplyakov, A, Liu, S, Lu, Z, Howard, A, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-05-08
Release date:2006-01-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of the Petal Death Protein from Carnation Flower.
Biochemistry, 44, 2005
1NNX
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Structure of the hypothetical protein ygiW from E. coli.
Descriptor: Protein ygiW, SULFATE ION
Authors:Lehmann, C, Galkin, A, Pullalarevu, S, Sarikaya, E, Krajewski, W, Lim, K, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-01-14
Release date:2004-03-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the hypothetical protein ygiW from E. coli.
To be Published
6NW9
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CRYSTAL STRUCTURE OF A TAILSPIKE PROTEIN 3 (TSP3, ORF212) FROM ESCHERICHIA COLI O157:H7 BACTERIOPHAGE CBA120
Descriptor: 1,2-ETHANEDIOL, CARBONATE ION, CHLORIDE ION, ...
Authors:Greenfield, J.Y, Herzberg, O.
Deposit date:2019-02-06
Release date:2019-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3).
Sci Rep, 9, 2019
1PMD
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PENICILLIN-BINDING PROTEIN 2X (PBP-2X)
Descriptor: PEPTIDOGLYCAN SYNTHESIS MULTIFUNCTIONAL ENZYME
Authors:Pares, S, Mouz, N, Dideberg, O.
Deposit date:1996-02-05
Release date:1997-02-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:X-ray structure of Streptococcus pneumoniae PBP2x, a primary penicillin target enzyme.
Nat.Struct.Biol., 3, 1996
1RXX
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Structure of arginine deiminase
Descriptor: Arginine deiminase
Authors:Galkin, A, Kulakova, L, Sarikaya, E, Lim, K, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-12-18
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target.
J.Biol.Chem., 279, 2004
2AAF
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Structure of H278A arginine deiminase with L-arginine forming a S-alkylthiouronium reaction intermediate
Descriptor: Arginine deiminase
Authors:Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-07-13
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
J.Biol.Chem., 280, 2005
1PYM
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BU of 1pym by Molmil
PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE
Descriptor: MAGNESIUM ION, OXALATE ION, PROTEIN (PHOSPHOENOLPYRUVATE MUTASE)
Authors:Huang, K, Li, Z, Herzberg, O.
Deposit date:1999-02-25
Release date:1999-07-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate.
Structure Fold.Des., 7, 1999
1K25
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PBP2x from a Highly Penicillin-resistant Streptococcus pneumoniae Clinical Isolate
Descriptor: low-affinity PENICILLIN-BINDING PROTEIN 2X
Authors:Dessen, A, Mouz, N, Hopkins, J, Dideberg, O.
Deposit date:2001-09-26
Release date:2001-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of PBP2x from a highly penicillin-resistant Streptococcus pneumoniae clinical isolate: a mosaic framework containing 83 mutations.
J.Biol.Chem., 276, 2001
1S2V
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Crystal structure of phosphoenolpyruvate mutase complexed with Mg(II)
Descriptor: MAGNESIUM ION, Phosphoenolpyruvate phosphomutase
Authors:Liu, S, Lu, Z, Han, Y, Jia, Y, Howard, A, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2004-01-11
Release date:2004-05-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational Flexibility of PEP Mutase
Biochemistry, 43, 2004
1MQO
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Metallo-beta-lactamase BcII Cd substituted from Bacillus cereus at 1.35 angstroms resolution
Descriptor: Beta-lactamase II, CADMIUM ION, CITRIC ACID
Authors:Garcia-Saez, I, Chantalat, L, Dideberg, O.
Deposit date:2002-09-17
Release date:2004-05-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:High resolution structure of the Cd substituted BcII from Bacillus cereus
To be Published
1LVG
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Crystal structure of mouse guanylate kinase in complex with GMP and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-MONOPHOSPHATE, Guanylate kinase, ...
Authors:Sekulic, N, Shuvalova, L, Spangenberg, O, Konrad, M, Lavie, A.
Deposit date:2002-05-28
Release date:2002-12-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural characterization of the closed conformation of mouse guanylate kinase.
J.Biol.Chem., 277, 2002
1KO2
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VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa with an oxidized Cys (cysteinesulfonic)
Descriptor: ACETATE ION, VIM-2 metallo-beta-lactamase, ZINC ION
Authors:Garcia-Saez, I, Docquier, J.-D, Rossolini, G.M, Dideberg, O.
Deposit date:2001-12-20
Release date:2003-09-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The three-dimensional structure of VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa in its reduced and oxidised form
J.Mol.Biol., 375, 2008
1NU0
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Structure of the double mutant (L6M; F134M, SeMet form) of yqgF from Escherichia coli, a hypothetical protein
Descriptor: Hypothetical protein yqgF, SULFATE ION
Authors:Galkin, A, Sarikaya, E, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-01-30
Release date:2004-03-02
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of yqgF from Escherichia coli, a hypothetical protein
To be Published
2A9G
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Structure of C406A arginine deiminase in complex with L-arginine
Descriptor: ARGININE, Arginine deiminase
Authors:Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-07-11
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
J.Biol.Chem., 280, 2005
1M85
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Structure of Proteus mirabilis catalase for the native form
Descriptor: GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Gouet, P, Jouve, H.-M, Dideberg, O.
Deposit date:2002-07-24
Release date:2002-08-14
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Proteus mirabilis PR catalase with and without bound NADPH.
J.Mol.Biol., 249, 1995
2ACI
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BU of 2aci by Molmil
Structure of D166A arginine deiminase
Descriptor: Arginine deiminase
Authors:Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-07-18
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
J.Biol.Chem., 280, 2005

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