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PDB: 171 results

1TOJ
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Hydrocinnamic acid-bound structure of SRHEPT mutant of E. coli aspartate aminotransferase
Descriptor: Aspartate aminotransferase, HYDROCINNAMIC ACID
Authors:Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
Deposit date:2004-06-14
Release date:2004-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1TOI
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Hydrocinnamic acid-bound structure of Hexamutant + A293D mutant of E. coli aspartate aminotransferase
Descriptor: Aspartate aminotransferase, HYDROCINNAMIC ACID
Authors:Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
Deposit date:2004-06-14
Release date:2004-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1F5W
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DIMERIC STRUCTURE OF THE COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR D1 DOMAIN
Descriptor: COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR, SULFATE ION
Authors:van Raaij, M.J, Chouin, E, van der Zandt, H, Bergelson, J.M, Cusack, S.
Deposit date:2000-06-18
Release date:2000-11-08
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution.
Structure Fold.Des., 8, 2000
2HT1
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The closed ring structure of the Rho transcription termination factor in complex with nucleic acid in the motor domains
Descriptor: 5'-R(*UP*C)-3', 5'-R(*UP*CP*UP*CP*U)-3', SULFATE ION, ...
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2006-07-24
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor.
Cell(Cambridge,Mass.), 127, 2006
1TOK
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Maleic acid-bound structure of SRHEPT mutant of E. coli aspartate aminotransferase
Descriptor: Aspartate aminotransferase, MALEIC ACID
Authors:Chow, M.A, McElroy, K.E, Corbett, K.D, Berger, J.M, Kirsch, J.F.
Deposit date:2004-06-14
Release date:2004-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase
Biochemistry, 43, 2004
1DDE
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STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor: DNA PRIMASE, YTTRIUM ION
Authors:Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
1VS0
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Crystal Structure of the Ligase Domain from M. tuberculosis LigD at 2.4A
Descriptor: CHLORIDE ION, MAGNESIUM ION, Putative DNA ligase-like protein Rv0938/MT0965, ...
Authors:Akey, D, Martins, A, Aniukwu, J, Glickman, M.S, Shuman, S, Berger, J.M, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-01-27
Release date:2006-02-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure and Nonhomologous End-joining Function of the Ligase Component of Mycobacterium DNA Ligase D.
J.Biol.Chem., 281, 2006
1MU5
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Structure of topoisomerase subunit
Descriptor: CALCIUM ION, Type II DNA topoisomerase VI Subunit B
Authors:Corbett, K.D, Berger, J.M.
Deposit date:2002-09-23
Release date:2003-01-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution
Embo J., 22, 2003
3E2K
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Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
Descriptor: Beta-lactamase inhibitory protein, Carbapenemase
Authors:Hanes, M.S, Jude, K.M, Berger, J.M, Bonomo, R.A, Handel, T.M.
Deposit date:2008-08-05
Release date:2009-08-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
1MX0
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Structure of topoisomerase subunit
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ...
Authors:Corbett, K.D, Berger, J.M.
Deposit date:2002-10-01
Release date:2003-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution
Embo J., 22, 2003
1PV4
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X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA
Descriptor: 5'-D(P*CP*C)-3', Transcription termination factor rho
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2003-06-26
Release date:2003-07-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
1PVO
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X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP
Descriptor: 5'-R(P*UP*C)-3', PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Transcription termination factor rho
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2003-06-27
Release date:2003-07-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
3E2L
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BU of 3e2l by Molmil
Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
Descriptor: Beta-lactamase inhibitory protein, Carbapenemase
Authors:Hanes, M.S, Jude, K.M, Berger, J.M, Kirsch, J.F, Bonomo, R.A, Handel, T.M.
Deposit date:2008-08-05
Release date:2009-08-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
1QC9
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BU of 1qc9 by Molmil
THE CRYSTALLOGRAPHIC STRUCTURE OF RESTRICTION ENDONUCLEASE ECO RI AT 3.3 A IN THE ABSENSE OF DNA
Descriptor: PROTEIN (ECO RI ENDONUCLEASE)
Authors:Chandrasekhar, K, Horvath, M.M, Samudzi, C, Choi, J, Rosenberg, J.M.
Deposit date:1999-05-18
Release date:1999-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:The 3.3 A Crystallographic Structure of Restriction Endonuclease Eco RI in the Absence of DNA
To be Published
1PVG
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BU of 1pvg by Molmil
Crystal Structure of the ATPase region of Saccharomyces Cerevisiae topoisomerase II
Descriptor: DNA topoisomerase II, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Classen, S, Olland, S, Berger, J.M.
Deposit date:2003-06-27
Release date:2003-08-26
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187
Proc.Natl.Acad.Sci.USA, 100, 2003
1QDV
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N-TERMINAL DOMAIN, VOLTAGE-GATED POTASSIUM CHANNEL KV1.2 RESIDUES 33-131
Descriptor: KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL
Authors:Minor Jr, D.L, Lin, Y.-F, Mobley, B.C, Yu, M, Jan, Y.N, Jan, L.Y, Berger, J.M.
Deposit date:1999-07-10
Release date:2000-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
1QDW
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BU of 1qdw by Molmil
N-TERMINAL DOMAIN, VOLTAGE-GATED POTASSIUM CHANNEL KV1.2 RESIDUES 33-119
Descriptor: KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL
Authors:Minor Jr, D.L, Lin, Y.-F, Mobley, B.C, Avelar, A, Jan, Y.N, Jan, L.Y, Berger, J.M.
Deposit date:1999-07-10
Release date:2000-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
2Q17
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BU of 2q17 by Molmil
Formylglycine Generating Enzyme from Streptomyces coelicolor
Descriptor: CALCIUM ION, formylglycine generating enzyme
Authors:Carlson, B.L, Ballister, E.R, Skordalakes, E, King, D.S, Breidenbach, M.A, Gilmore, S.A, Berger, J.M, Bertozzi, C.R.
Deposit date:2007-05-23
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Function and structure of a prokaryotic formylglycine-generating enzyme.
J.Biol.Chem., 283, 2008
1QRI
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BU of 1qri by Molmil
X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 A
Descriptor: 5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', ECO RI ENDONCULEASE
Authors:Choi, J, Kim, Y, Greene, P, Hager, P, Rosenberg, J.M.
Deposit date:1999-06-14
Release date:1999-06-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:X-Ray Structure of the DNA-Eco RI Endonuclease Complexes with the ED144 and RK145 Mutations
To be Published
2OXV
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BU of 2oxv by Molmil
Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.
Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), Type II restriction enzyme EcoRI
Authors:Sapienza, P.J, Rosenberg, J.M, Jen-Jacobson, L.
Deposit date:2007-02-21
Release date:2007-10-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and thermodynamic basis for enhanced DNA binding by a promiscuous mutant EcoRI endonuclease.
Structure, 15, 2007
1QRH
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BU of 1qrh by Molmil
X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A
Descriptor: 5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3', ECO RI ENDONCULEASE
Authors:Choi, J, Kim, Y, Greene, P, Hager, P, Rosenberg, J.M.
Deposit date:1999-06-14
Release date:1999-06-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-Ray Structure of the DNA-Eco RI Endonuclease Complexes with the ED144 and RK145 Mutations
To be Published
2Q2E
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BU of 2q2e by Molmil
Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei
Descriptor: Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A
Authors:Corbett, K.D, Benedetti, P, Berger, J.M.
Deposit date:2007-05-28
Release date:2007-07-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4 Å)
Cite:Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
Nat.Struct.Mol.Biol., 14, 2007
1QPS
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THE CRYSTAL STRUCTURE OF A POST-REACTIVE COGNATE DNA-ECO RI COMPLEX AT 2.50 A IN THE PRESENCE OF MN2+ ION
Descriptor: 5'-D(*AP*AP*TP*TP*CP*GP*CP*GP*)-3', 5'-D(*TP*CP*GP*CP*GP*)-3', ENDONUCLEASE ECORI, ...
Authors:Horvath, M, Choi, J, Kim, Y, Wilkosz, P, Rosenberg, J.M.
Deposit date:1999-05-28
Release date:1999-06-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Integration of Recognition and Cleavage: X-Ray Structures of Pre- Transition State and Post-Reactive DNA-Eco RI Endonuclease Complexes
To be Published
1QZR
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CRYSTAL STRUCTURE OF THE ATPASE REGION OF SACCHAROMYCES CEREVISIAE TOPOISOMERASE II BOUND TO ICRF-187 (DEXRAZOXANE)
Descriptor: (S)-4,4'-(1-METHYL-1,2-ETHANEDIYL)BIS-2,6-PIPERAZINEDIONE, DNA topoisomerase II, MAGNESIUM ION, ...
Authors:Classen, S, Olland, S, Berger, J.M.
Deposit date:2003-09-17
Release date:2003-09-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187
Proc.Natl.Acad.Sci.USA, 100, 2003
2QBY
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Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 6 homolog 1, Cell division control protein 6 homolog 3, ...
Authors:Cunningham Dueber, E.L, Corn, J.E, Bell, S.D, Berger, J.M.
Deposit date:2007-06-18
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex.
Science, 317, 2007

224572

数据于2024-09-04公开中

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