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PDB: 172 results

1HUA
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BU of 1hua by Molmil
THE SOLUTION CONFORMATION OF HYALURONAN: A COMBINED NMR AND MOLECULAR DYNAMICS STUDY
Descriptor: beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-2,6-anhydro-L-gulonic acid
Authors:Holmbeck, S.M.A, Petillo, P.A, Lerner, L.E.
Deposit date:1994-01-31
Release date:1994-11-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The solution conformation of hyaluronan: a combined NMR and molecular dynamics study.
Biochemistry, 33, 1994
7QV1
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BU of 7qv1 by Molmil
Bacillus subtilis collided disome (Leading 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2022-01-19
Release date:2022-03-09
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
Nature, 603, 2022
7QV2
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BU of 7qv2 by Molmil
Bacillus subtilis collided disome (Collided 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2022-01-19
Release date:2022-03-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
Nature, 603, 2022
7QV3
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BU of 7qv3 by Molmil
Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2022-01-19
Release date:2022-03-09
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (5.14 Å)
Cite:Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
Nature, 603, 2022
8BJP
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BU of 8bjp by Molmil
The N288D mutant cytoplasmic PAS domain of Geobacillus thermodenitrificans histidine kinase CitA
Descriptor: MAGNESIUM ION, cytoplasmic PAS domain of CitA from Geobacillus thermodenitrificans
Authors:Becker, S.
Deposit date:2022-11-04
Release date:2023-11-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The N288D mutant cytoplasmic PAS domain of Geobacillus thermodenitrificans histidine kinase CitA
To Be Published
8BGB
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BU of 8bgb by Molmil
Structure of the citrate-bound extracytoplasmic PAS domain of histidine kinase CitA from Geobacillus thermodenitrificans
Descriptor: CITRATE ANION, Histidine kinase, SODIUM ION
Authors:Becker, S.
Deposit date:2022-10-27
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the citrate-bound extracytoplasmic PAS domain of histidine kinase CitA from Geobacillus thermodenitrificans
To Be Published
8BIY
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BU of 8biy by Molmil
Citrate-free extracytoplasmic PAS domain mutant R93A of sensor histidine kinase CitA from Geobacillus thermodenitrificans
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, Histidine kinase, ...
Authors:Becker, S.
Deposit date:2022-11-02
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Citrate-free extracytoplasmic PAS domain mutant R93A of sensor histidine kinase CitA from Geobacillus thermodenitrificans
To Be Published
1BG1
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BU of 1bg1 by Molmil
TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX
Descriptor: DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3'), PROTEIN (TRANSCRIPTION FACTOR STAT3B)
Authors:Becker, S, Groner, B, Muller, C.W.
Deposit date:1998-06-03
Release date:1999-01-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Three-dimensional structure of the Stat3beta homodimer bound to DNA.
Nature, 394, 1998
5C58
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BU of 5c58 by Molmil
A double mutant of serratia marcescens hemophore receptor HasR in complex with its hemophore HasA and heme
Descriptor: HasR protein, Hemophore HasA, PROTOPORPHYRIN IX CONTAINING FE
Authors:Becker, S, Diederichs, K, Welte, W.
Deposit date:2015-06-19
Release date:2016-06-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.795 Å)
Cite:Binding of HasA by its transmembrane receptor HasR follows a conformational funnel mechanism.
Eur.Biophys.J., 49, 2020
7OOJ
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BU of 7ooj by Molmil
Structure of D-Thr53 Ubiquitin
Descriptor: CADMIUM ION, Ubiquitin
Authors:Becker, S.
Deposit date:2021-05-27
Release date:2022-05-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A litmus test for classifying recognition mechanisms of transiently binding proteins.
Nat Commun, 13, 2022
7AQD
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BU of 7aqd by Molmil
Structure of the bacterial RQC complex (Translocating State)
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2020-10-21
Release date:2020-11-25
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mimicry of Canonical Translation Elongation Underlies Alanine Tail Synthesis in RQC.
Mol.Cell, 81, 2021
7AQC
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BU of 7aqc by Molmil
Structure of the bacterial RQC complex (Decoding State)
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2020-10-21
Release date:2020-11-25
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Mimicry of Canonical Translation Elongation Underlies Alanine Tail Synthesis in RQC.
Mol.Cell, 81, 2021
2YBO
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BU of 2ybo by Molmil
The x-ray structure of the SAM-dependent uroporphyrinogen III methyltransferase NirE from Pseudomonas aeruginosa in complex with SAH
Descriptor: METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Storbeck, S, Saha, S, Krausze, J, Klink, B.U, Heinz, D.W, Layer, G.
Deposit date:2011-03-08
Release date:2011-06-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Heme D1 Biosynthesis Enzyme Nire in Complex with its Substrate Reveals New Insights Into the Catalytic Mechanism of S-Adenosyl-L-Methionine-Dependent Uroporphyrinogen III Methyltransferases.
J.Biol.Chem., 286, 2011
2YBQ
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BU of 2ybq by Molmil
The x-ray structure of the SAM-dependent uroporphyrinogen III methyltransferase NirE from Pseudomonas aeruginosa in complex with SAH and uroporphyrinogen III
Descriptor: METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, UROPORPHYRINOGEN III
Authors:Storbeck, S, Saha, S, Krausze, J, Klink, B.U, Heinz, D.W, Layer, G.
Deposit date:2011-03-09
Release date:2011-06-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Heme D1 Biosynthesis Enzyme Nire in Complex with its Substrate Reveals New Insights Into the Catalytic Mechanism of S-Adenosyl-L-Methionine-Dependent Uroporphyrinogen III Methyltransferases.
J.Biol.Chem., 286, 2011
6FCG
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BU of 6fcg by Molmil
Crystal structure of an endo-laminarinase from Formosa Hel1_33_131
Descriptor: CALCIUM ION, Glycoside hydrolase, GH17 family
Authors:Becker, S, Robb, C.S, Hehemann, J.H.
Deposit date:2017-12-20
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.
ISME J, 12, 2018
1RXR
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BU of 1rxr by Molmil
HIGH RESOLUTION SOLUTION STRUCTURE OF THE RETINOID X RECEPTOR DNA BINDING DOMAIN, NMR, 20 STRUCTURE
Descriptor: RETINOIC ACID RECEPTOR-ALPHA, ZINC ION
Authors:Holmbeck, S.M.A, Foster, M.P, Casimiro, D.R, Sem, D.S, Dyson, H.J, Wright, P.E.
Deposit date:1998-06-12
Release date:1998-11-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:High-resolution solution structure of the retinoid X receptor DNA-binding domain.
J.Mol.Biol., 281, 1998
5M28
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BU of 5m28 by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 bound to maltotriose
Descriptor: CHLORIDE ION, MalE1, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2016-10-12
Release date:2017-07-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.079 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
5MK9
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BU of 5mk9 by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 bound to beta-cyclodextrin
Descriptor: CHLORIDE ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), MalE1
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2016-12-02
Release date:2017-07-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.919 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
5MKB
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BU of 5mkb by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 without ligand
Descriptor: MalE1
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2016-12-03
Release date:2017-07-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
5MKA
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BU of 5mka by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 bound to gamma-cyclodextrin
Descriptor: Cyclooctakis-(1-4)-(alpha-D-glucopyranose), MalE1
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2016-12-02
Release date:2017-07-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.149 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
5MTU
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BU of 5mtu by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 bound to alpha-cyclodextrin
Descriptor: Cyclohexakis-(1-4)-(alpha-D-glucopyranose), MalE1
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2017-01-10
Release date:2017-07-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.999 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
5MTT
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BU of 5mtt by Molmil
Maltodextrin binding protein MalE1 from L. casei BL23 bound to maltotetraose
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MalE1, ...
Authors:Homburg, C, Bommer, M, Wuttge, S, Hobe, C, Beck, S, Dobbek, H, Deutscher, J, Licht, A, Schneider, E.
Deposit date:2017-01-10
Release date:2017-07-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Inducer exclusion in Firmicutes: insights into the regulation of a carbohydrate ATP binding cassette transporter from Lactobacillus casei BL23 by the signal transducing protein P-Ser46-HPr.
Mol. Microbiol., 105, 2017
3BTN
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BU of 3btn by Molmil
Crystal structure of antizyme inhibitor, an ornithine decarboxylase homologous protein
Descriptor: Antizyme inhibitor 1
Authors:Dym, O, Unger, T, Albeck, S, Kahana, C, Israel Structural Proteomics Center (ISPC)
Deposit date:2007-12-30
Release date:2008-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystallographic and biochemical studies revealing the structural basis for antizyme inhibitor function.
Protein Sci., 17, 2008
8VCI
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BU of 8vci by Molmil
SARS-CoV-2 Frameshift Stimulatory Element with Upstream Multibranch Loop
Descriptor: Frameshift Stimulatory Element with Upstream Multi-branch Loop
Authors:Peterson, J.M, Becker, S.T, O'Leary, C.A, Juneja, P, Yang, Y, Moss, W.N.
Deposit date:2023-12-14
Release date:2024-01-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Structure of the SARS-CoV-2 Frameshift Stimulatory Element with an Upstream Multibranch Loop.
Biochemistry, 63, 2024
6EHL
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BU of 6ehl by Molmil
Model of the Ebola virus nucleoprotein in recombinant nucleocapsid-like assemblies
Descriptor: Nucleoprotein
Authors:Wan, W, Kolesnikova, L, Clarke, M, Koehler, A, Noda, T, Becker, S, Briggs, J.A.G.
Deposit date:2017-09-13
Release date:2017-11-08
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structure and assembly of the Ebola virus nucleocapsid.
Nature, 551, 2017

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