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PDB: 62 件
2G2S
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BU of 2g2s by Molmil
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Barondeau, D.P.
登録日2006-02-16
公開日2006-04-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
J.Am.Chem.Soc., 128, 2006
2HFC
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BU of 2hfc by Molmil
Structure of S65T Y66F R96A GFP variant in precursor state
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2006-06-23
公開日2007-03-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis
J.Am.Chem.Soc., 129, 2007
2HCG
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BU of 2hcg by Molmil
Structure of S65T Y66F GFP variant after cyclization, carbon-carbon bond cleavage, and oxygen incorporation reactions
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2006-06-16
公開日2007-03-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis
J.Am.Chem.Soc., 129, 2007
2HGD
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BU of 2hgd by Molmil
Structure of S65A Y66F GFP variant with an oxidized chromophore
分子名称: Green fluorescent protein
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2006-06-26
公開日2007-03-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis
J.Am.Chem.Soc., 129, 2007
2HGY
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BU of 2hgy by Molmil
Structure of S65A Y66F E222A GFP variant after cyclization and carbon-carbon bond cleavage
分子名称: Green fluorescent protein
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2006-06-27
公開日2007-03-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis
J.Am.Chem.Soc., 129, 2007
5USR
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BU of 5usr by Molmil
Crystal structure of human NFS1-ISD11 in complex with E. coli acyl-carrier protein at 3.09 angstroms
分子名称: Acyl carrier protein, Cysteine desulfurase, mitochondrial, ...
著者Cory, S.A, Barondeau, D.P.
登録日2017-02-13
公開日2017-06-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Structure of human Fe-S assembly subcomplex reveals unexpected cysteine desulfurase architecture and acyl-ACP-ISD11 interactions.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6P3H
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BU of 6p3h by Molmil
Crystal structure of LigU(K66M) bound to substrate
分子名称: (1E)-4-oxobut-1-ene-1,2,4-tricarboxylic acid, (4E)-oxalomesaconate Delta-isomerase, CHLORIDE ION
著者Cory, S.A, Hogancamp, T.N, Raushel, F.M, Barondeau, D.P.
登録日2019-05-23
公開日2019-07-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Structure and Chemical Reaction Mechanism of LigU, an Enzyme That Catalyzes an Allylic Isomerization in the Bacterial Degradation of Lignin.
Biochemistry, 58, 2019
4J35
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BU of 4j35 by Molmil
Molecular Engineering of Organophosphate Hydrolysis Activity from a Weak Promiscuous Lactonase Template
分子名称: COBALT (II) ION, Phosphotriesterase, putative
著者Sterner, R, Raushel, F, Meier, M, Rajendran, C, Malisi, C, Fox, N, Schlee, S, Barondeau, D, Cker, B.H.
登録日2013-02-05
公開日2013-07-24
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (1.783 Å)
主引用文献Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template.
J.Am.Chem.Soc., 135, 2013
6P3K
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BU of 6p3k by Molmil
Crystal structure of LigU(C100S)
分子名称: (4E)-oxalomesaconate Delta-isomerase, CHLORIDE ION
著者Cory, S.A, Hogancamp, T.N, Raushel, F.M, Barondeau, D.P.
登録日2019-05-23
公開日2019-07-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Structure and Chemical Reaction Mechanism of LigU, an Enzyme That Catalyzes an Allylic Isomerization in the Bacterial Degradation of Lignin.
Biochemistry, 58, 2019
6P3J
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BU of 6p3j by Molmil
Crystal structure of LigU
分子名称: (4E)-oxalomesaconate Delta-isomerase, CALCIUM ION, CHLORIDE ION, ...
著者Cory, S.A, Hogancamp, T.N, Raushel, F.M, Barondeau, D.P.
登録日2019-05-23
公開日2019-07-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structure and Chemical Reaction Mechanism of LigU, an Enzyme That Catalyzes an Allylic Isomerization in the Bacterial Degradation of Lignin.
Biochemistry, 58, 2019
4J5N
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BU of 4j5n by Molmil
Crystal Structure of a Deinococcus radiodurans PTE-like lactonase (drPLL) mutant Y28L/D71N/E101G/E179D/V235L/L270M
分子名称: COBALT (II) ION, Phosphotriesterase, putative
著者Meier, M.M, Rajendran, C, Malisi, C, Fox, N.G, Xu, C, Schlee, S, Barondeau, D.P, Hocker, B, Sterner, R, Raushel, F.M.
登録日2013-02-08
公開日2013-07-24
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template.
J.Am.Chem.Soc., 135, 2013
2QT2
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BU of 2qt2 by Molmil
Cyclized-Dehydrated Intermediate of GFP Variant Q183E in Chromophore Maturation
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D.
登録日2007-07-31
公開日2009-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Kinetically Isolated Reaction Intermediates Provide Structural Characterization of the Green Fluorescence Protein Fluorophore Biosynthesis Pathway
To be Published
2QRF
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BU of 2qrf by Molmil
Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D.
登録日2007-07-28
公開日2009-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Green Fluorescent Protein Chromophore - Cyclized Intermediate
To be Published
2QZ0
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BU of 2qz0 by Molmil
Mature Q183E variant of Green Fluorescent Protein Chromophore
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D.
登録日2007-08-15
公開日2009-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Kinetically Isolated Reaction Intermediates Provide Structural Characterization of the GFP Fluorophore Biosynthesis Pathway
To be Published
3F7K
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BU of 3f7k by Molmil
X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex
分子名称: COPPER (I) ION, COPPER (II) ION, Copper,Zinc Superoxide Dismutase, ...
著者Shin, D.S, DiDonato, M, Barondeau, D.P, Getzoff, E.D, Tainer, J.A.
登録日2008-11-09
公開日2009-02-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
J.Mol.Biol., 385, 2009
3F7L
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BU of 3f7l by Molmil
X-ray Crystal Structure of Alvinella pompejana Cu,Zn Superoxide Dismutase
分子名称: ACETIC ACID, COPPER (I) ION, COPPER (II) ION, ...
著者Shin, D.S, DiDonato, M, Barondeau, D.P, Getzoff, E.D, Tainer, J.A.
登録日2008-11-09
公開日2009-02-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
J.Mol.Biol., 385, 2009
3ITC
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BU of 3itc by Molmil
Crystal structure of Sco3058 with bound citrate and glycerol
分子名称: CITRIC ACID, GLYCEROL, ZINC ION, ...
著者Nguyen, T.T, Cummings, J.A, Tsai, C.-L, Barondeau, D.P, Raushel, F.M.
登録日2009-08-28
公開日2010-02-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure, mechanism, and substrate profile for Sco3058: the closest bacterial homologue to human renal dipeptidase
Biochemistry, 49, 2010
2AWL
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BU of 2awl by Molmil
Mature R96K GFP mutant
分子名称: MAGNESIUM ION, green fluorescent protein
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-09-01
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
2AWM
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BU of 2awm by Molmil
GFP R96A chromophore maturation recovery mutant R96A Q183R
分子名称: MAGNESIUM ION, green fluorescent protein
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-09-01
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
2AWJ
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BU of 2awj by Molmil
GFP R96M pre-cyclized intermediate in chromophore formation
分子名称: MAGNESIUM ION, green-fluorescent protein
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-09-01
公開日2006-04-18
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
2AWK
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BU of 2awk by Molmil
GFP R96M mature chromophore
分子名称: MAGNESIUM ION, green fluorescent protein
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-09-01
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
3T3T
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BU of 3t3t by Molmil
1.38 A structure of human frataxin variant Q148G
分子名称: Frataxin, mitochondrial, SULFATE ION
著者Bridwell-Rabb, J, Winn, A.M, Barondeau, D.P.
登録日2011-07-25
公開日2011-08-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Structure-Function Analysis of Friedreich's Ataxia Mutants Reveals Determinants of Frataxin Binding and Activation of the Fe-S Assembly Complex.
Biochemistry, 50, 2011
3URB
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BU of 3urb by Molmil
Crystal Structure of PTE mutant H254G/H257W/L303T/M317L/I106C/F132I/L271I/K185R/I274N/A80V/R67H
分子名称: COBALT (II) ION, DIETHYL HYDROGEN PHOSPHATE, IMIDAZOLE, ...
著者Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M.
登録日2011-11-21
公開日2012-08-01
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.
Biochemistry, 51, 2012
3URA
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BU of 3ura by Molmil
Crystal Structure of PTE mutant H254G/H257W/L303T/K185R/I274N/A80V/S61T
分子名称: COBALT (II) ION, IMIDAZOLE, Parathion hydrolase
著者Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M.
登録日2011-11-21
公開日2012-08-01
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.
Biochemistry, 51, 2012
3URN
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BU of 3urn by Molmil
Crystal Structure of PTE mutant H254G/H257W/L303T/K185R/I274N/A80V/S61T with cyclohexyl methylphosphonate inhibitor
分子名称: COBALT (II) ION, IMIDAZOLE, Parathion hydrolase, ...
著者Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M.
登録日2011-11-22
公開日2012-08-01
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.
Biochemistry, 51, 2012

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