Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 14971 results

5OWF
DownloadVisualize
BU of 5owf by Molmil
Structure of a LAO-binding protein mutant with glutamine
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTAMINE, ...
Authors:Shanmugaratnam, S, Banda-Vazquez, J, Sosa-Peinado, A, Hocker, B.
Deposit date:2017-08-31
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Redesign of LAOBP to bind novel l-amino acid ligands.
Protein Sci., 27, 2018
6L8V
DownloadVisualize
BU of 6l8v by Molmil
membrane-bound Bax helix2-helix5 domain
Descriptor: Apoptosis regulator BAX
Authors:OuYang, B, Lv, F.
Deposit date:2019-11-07
Release date:2020-11-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An amphipathic Bax core dimer forms part of the apoptotic pore wall in the mitochondrial membrane.
Embo J., 40, 2021
6L0L
DownloadVisualize
BU of 6l0l by Molmil
Hydra-1ubq de nova designed by Hydra based on ubiquitin
Descriptor: Hydra-1ubq
Authors:Ouyang, B.
Deposit date:2019-09-26
Release date:2020-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multiobjective heuristic algorithm for de novo protein design in a quantified continuous sequence space.
Comput Struct Biotechnol J, 19, 2021
4F71
DownloadVisualize
BU of 4f71 by Molmil
Crystal structure of had family enzyme bt-2542 (target efi-501088) from Bacteroides thetaiotaomicron, wild-type protein, complex with magnesium and inorganic phosphate
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Allen, K.N, Dunaway-Mariano, D, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-05-15
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structure of Protein Bt-2542 from Bacteroides Thetaiotaomicron (Target Efi-501088)
To be Published
4F4R
DownloadVisualize
BU of 4f4r by Molmil
Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop
Descriptor: CHLORIDE ION, D-mannonate dehydratase, GLYCEROL, ...
Authors:Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI), Medical Structural Genomics of Pathogenic Protozoa (MSGPP)
Deposit date:2012-05-11
Release date:2012-06-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop
to be published
6R9K
DownloadVisualize
BU of 6r9k by Molmil
A quadruplex hybrid structure with lpp loop orientation and 3 syn residues
Descriptor: DNA (25-MER)
Authors:Karg, B, Weisz, K.
Deposit date:2019-04-03
Release date:2019-07-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Duplex-Guided Refolding into Novel G-Quadruplex (3+1) Hybrid Conformations.
Angew.Chem.Int.Ed.Engl., 58, 2019
5OWG
DownloadVisualize
BU of 5owg by Molmil
Structure of PcyX_EBK42635
Descriptor: PcyX_EBK42635
Authors:Sommerkamp, J.A, Ledermann, B, Frankenberg-Dinkel, N, Hofmann, E.
Deposit date:2017-09-01
Release date:2017-11-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Evolution and molecular mechanism of four-electron reducing ferredoxin-dependent bilin reductases from oceanic phages.
FEBS J., 285, 2018
5OY7
DownloadVisualize
BU of 5oy7 by Molmil
Structure of the 4_601_157 tetranucleosome (P1 form)
Descriptor: CHLORIDE ION, DNA (619-MER), Histone H2A, ...
Authors:Ekundayo, B, Richmond, T.J, Schalch, T.
Deposit date:2017-09-07
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (5.774 Å)
Cite:Capturing Structural Heterogeneity in Chromatin Fibers.
J. Mol. Biol., 429, 2017
5OMP
DownloadVisualize
BU of 5omp by Molmil
Human FKBP5 protein
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, SULFATE ION
Authors:Kumar, R, Moche, M, Winblad, B, Pavlov, P.
Deposit date:2017-08-01
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Combined x-ray crystallography and computational modeling approach to investigate the Hsp90 C-terminal peptide binding to FKBP51.
Sci Rep, 7, 2017
5P9V
DownloadVisualize
BU of 5p9v by Molmil
humanized rat COMT in complex with 8-hydroxy-6-(2-methylpyridin-3-yl)-3H-quinazolin-4-one
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, 6-(2-methylpyridin-3-yl)-8-oxidanyl-3~{H}-quinazolin-4-one, ...
Authors:Ehler, A, Buettelmann, B, Rudolph, M.G.
Deposit date:2016-10-19
Release date:2017-11-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Crystal Structure of a COMT complex
To be published
6L2P
DownloadVisualize
BU of 6l2p by Molmil
Threonyl-tRNA synthetase from Salmonella enterica in the apo form
Descriptor: Threonine--tRNA ligase, ZINC ION
Authors:Guo, J, Chen, B, Zhou, H.
Deposit date:2019-10-05
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of novel tRNA-amino acid dual-site inhibitors against threonyl-tRNA synthetase by fragment-based target hopping.
Eur.J.Med.Chem., 187, 2019
6R9L
DownloadVisualize
BU of 6r9l by Molmil
A quadruplex hybrid structure with lpp loop orientation and 5 syn residues
Descriptor: DNA (25-MER)
Authors:Karg, B, Weisz, K.
Deposit date:2019-04-03
Release date:2019-07-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Duplex-Guided Refolding into Novel G-Quadruplex (3+1) Hybrid Conformations.
Angew.Chem.Int.Ed.Engl., 58, 2019
4FCR
DownloadVisualize
BU of 4fcr by Molmil
Targeting conserved water molecules: Design of 4-aryl-5-cyanopyrrolo[2,3-d]pyrimidine Hsp90 inhibitors using fragment-based screening and structure-based optimization
Descriptor: 2-{[4-(2-chloro-4,5-dimethoxyphenyl)-5-cyano-7H-pyrrolo[2,3-d]pyrimidin-2-yl]sulfanyl}-N,N-dimethylacetamide, Heat shock protein HSP 90-alpha
Authors:Davies, N.G, Browne, H, Davis, B, Foloppe, N, Geoffrey, S, Gibbons, B, Hart, T, Drysdale, M.J, Mansell, H, Massey, A, Matassova, N, Moore, J.D, Murray, J, Pratt, R, Ray, S, Roughley, S.D, Jensen, M.R, Schoepfer, J, Scriven, K, Simmonite, H, Stokes, S, Surgenor, A, Webb, P, Wright, L, Brough, P.
Deposit date:2012-05-25
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Targeting conserved water molecules: Design of 4-aryl-5-cyanopyrrolo[2,3-d]pyrimidine Hsp90 inhibitors using fragment-based screening and structure-based optimization.
Bioorg.Med.Chem., 20, 2012
5P9U
DownloadVisualize
BU of 5p9u by Molmil
humanized rat catechol O-methyltransferase in complex with SAH and 6-bromo-8-hydroxy-3H-quinazolin-4-one
Descriptor: 6-bromanyl-8-oxidanyl-3~{H}-quinazolin-4-one, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Ehler, A, Buettelmann, B, Rudolph, M.G.
Deposit date:2016-10-19
Release date:2017-11-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystal Structure of a COMT complex
To be published
5OSN
DownloadVisualize
BU of 5osn by Molmil
Crystal Structure of Bovine Enterovirus 2 determined with Serial Femtosecond X-ray Crystallography
Descriptor: Capsid protein, GLUTAMIC ACID, POTASSIUM ION, ...
Authors:Roedig, P, Ginn, H.M, Pakendorf, T, Sutton, G, Harlos, K, Walter, T.S, Meyer, J, Fischer, P, Duman, R, Vartiainen, I, Reime, B, Warmer, M, Brewster, A.S, Young, I.D, Michels-Clark, T, Sauter, N.K, Kotecha, A, Kelly, J, Rowlands, D.J, Sikorsky, M, Nelson, S, Damiani, D.S, Alonso-Mori, R, Ren, J, Fry, E.E, David, C, Stuart, D.I, Wagner, A, Meents, A.
Deposit date:2017-08-17
Release date:2017-08-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High-speed fixed-target serial virus crystallography.
Nat. Methods, 14, 2017
4FCQ
DownloadVisualize
BU of 4fcq by Molmil
Targeting conserved water molecules: Design of 4-aryl-5-cyanopyrrolo[2,3-d]pyrimidine Hsp90 inhibitors using fragment-based screening and structure-based optimization
Descriptor: 4-(2,4-dimethylphenyl)-2-(methylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile, Heat shock protein HSP 90-alpha
Authors:Davies, N.G, Browne, H, Davis, B, Foloppe, N, Geoffrey, S, Gibbons, B, Hart, T, Drysdale, M.J, Mansell, H, Massey, A, Matassova, N, Moore, J.D, Murray, J, Pratt, R, Ray, S, Roughley, S.D, Jensen, M.R, Schoepfer, J, Scriven, K, Simmonite, H, Stokes, S, Surgenor, A, Webb, P, Wright, L, Brough, P.
Deposit date:2012-05-25
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Targeting conserved water molecules: Design of 4-aryl-5-cyanopyrrolo[2,3-d]pyrimidine Hsp90 inhibitors using fragment-based screening and structure-based optimization.
Bioorg.Med.Chem., 20, 2012
6L2Q
DownloadVisualize
BU of 6l2q by Molmil
Threonyl-tRNA synthetase from Salmonella enterica in complex with an inhibitor
Descriptor: (2S,3R)-2-azanyl-N-[(E)-4-[6,7-bis(chloranyl)-4-oxidanylidene-quinazolin-3-yl]but-2-enyl]-3-oxidanyl-butanamide, 1,2-ETHANEDIOL, Threonine--tRNA ligase, ...
Authors:Guo, J, Chen, B, Zhou, H.
Deposit date:2019-10-05
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of novel tRNA-amino acid dual-site inhibitors against threonyl-tRNA synthetase by fragment-based target hopping.
Eur.J.Med.Chem., 187, 2019
5P9T
DownloadVisualize
BU of 5p9t by Molmil
humanized rat catechol O-methyltransferase in complex with 6-(4-fluorophenyl)-8-hydroxy-3H-quinazolin-4-one
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 6-(4-fluorophenyl)-8-oxidanyl-3~{H}-quinazolin-4-one, ...
Authors:Ehler, A, Buettelmann, B, Rudolph, M.G.
Deposit date:2016-10-19
Release date:2017-11-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Crystal Structure of a COMT complex
To be published
7OJT
DownloadVisualize
BU of 7ojt by Molmil
Crystal structure of unliganded PatA, a membrane associated acyltransferase from Mycobacterium smegmatis
Descriptor: GLYCEROL, Phosphatidylinositol mannoside acyltransferase
Authors:Anso, I, Wang, L, Marina, A, Paez-Perez, E.D, Perrone, S, Lowary, T.L, Trastoy, B, Guerin, M.E.
Deposit date:2021-05-17
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.67 Å)
Cite:Molecular ruler mechanism and interfacial catalysis of the integral membrane acyltransferase PatA.
Sci Adv, 7, 2021
7OB2
DownloadVisualize
BU of 7ob2 by Molmil
NMR structure of the antimicrobial RiLK1 peptide in SDS micelles
Descriptor: RiLK1
Authors:Falcigno, L, D'Auria, G, Palmieri, G, Gogliettino, M, Agrillo, B.
Deposit date:2021-04-20
Release date:2021-11-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Key Physicochemical Determinants in the Antimicrobial Peptide RiLK1 Promote Amphipathic Structures.
Int J Mol Sci, 22, 2021
7O6Q
DownloadVisualize
BU of 7o6q by Molmil
Structure of the borneol dehydrogenase 1 of salvia rosmarinus
Descriptor: borneol dehydrogenase
Authors:Dimos, N, Helmer, C.P.O, Hilal, T, Loll, B.
Deposit date:2021-04-12
Release date:2021-12-01
Last modified:2022-01-19
Method:ELECTRON MICROSCOPY (1.88 Å)
Cite:CryoEM analysis of small plant biocatalysts at sub-2 angstrom resolution.
Acta Crystallogr D Struct Biol, 78, 2022
7OA6
DownloadVisualize
BU of 7oa6 by Molmil
Pseudo-atomic model for Hsp26 residues 63 to 214. Please be advised that the target map is not of sufficient resolution to unambiguously position backbone or side chain atoms. This model represents a likely fit.
Descriptor: Heat shock protein 26
Authors:Muehlhofer, M, Peters, C, Kriehuber, T, Kreuzeder, M, Kazman, P, Rodina, N, Reif, B, Haslbeck, M, Weinkauf, S, Buchner, J.
Deposit date:2021-04-19
Release date:2021-11-24
Last modified:2021-12-01
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Phosphorylation activates the yeast small heat shock protein Hsp26 by weakening domain contacts in the oligomer ensemble.
Nat Commun, 12, 2021
7O6P
DownloadVisualize
BU of 7o6p by Molmil
Structure of the borneol dehydrogenase 2 of Salvia officinalis
Descriptor: borneol dehydrogenase
Authors:Dimos, N, Helmer, C.P.O, Hilal, T, Loll, B.
Deposit date:2021-04-12
Release date:2021-12-01
Last modified:2022-01-19
Method:ELECTRON MICROSCOPY (2.04 Å)
Cite:CryoEM analysis of small plant biocatalysts at sub-2 angstrom resolution.
Acta Crystallogr D Struct Biol, 78, 2022
7OA4
DownloadVisualize
BU of 7oa4 by Molmil
Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001
Descriptor: (2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid, FORMIC ACID, MANGANESE (II) ION, ...
Authors:Feracci, M, Hernandez, S, Vincentelli, R, Ferron, F, Reguera, J, Canard, B, Alvarez, K.
Deposit date:2021-04-19
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001
To Be Published
7O1B
DownloadVisualize
BU of 7o1b by Molmil
Human phosphomannomutase 2 (PMM2) wild-type co-crystallized with the activator glucose 1,6-bisphosphate
Descriptor: 1,6-di-O-phosphono-alpha-D-glucopyranose, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Ramon-Maiques, S, Briso-Montiano, A, Del Cano-Ochoa, F, Vilas, A, Perez, B, Rubio, V.
Deposit date:2021-03-29
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Insight on molecular pathogenesis and pharmacochaperoning potential in phosphomannomutase 2 deficiency, provided by novel human phosphomannomutase 2 structures.
J Inherit Metab Dis, 45, 2022

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon