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PDB: 4123 results

5DQZ
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BU of 5dqz by Molmil
Crystal Structure of Cas-DNA-PAM complex
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (36-MER), ...
Authors:Wang, J, Li, J, Zhao, H, Sheng, G, Wang, M, Yin, M, Wang, Y.
Deposit date:2015-09-15
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in CRISPR-Cas Systems.
Cell, 163, 2015
6CT0
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BU of 6ct0 by Molmil
Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex
Descriptor: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
Authors:Jiang, J, Baiesc, F.L, Hiromasa, Y, Yu, X, Hui, W.H, Dai, X, Roche, T.E, Zhou, Z.H.
Deposit date:2018-03-21
Release date:2018-04-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex.
Biochemistry, 57, 2018
6CW6
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BU of 6cw6 by Molmil
Structure of alpha-GC[8,18] bound by CD1d and in complex with the Va14Vb8.2 TCR
Descriptor: (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wang, J, Zajonc, D.
Deposit date:2018-03-29
Release date:2019-04-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.
J.Biol.Chem., 294, 2019
6CXE
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BU of 6cxe by Molmil
Structure of alpha-GSA[26,6P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Wang, J, Zajonc, D.
Deposit date:2018-04-02
Release date:2019-04-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.
J.Biol.Chem., 294, 2019
4L43
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BU of 4l43 by Molmil
Crystal structures of human p70S6K1-T389A (form I)
Descriptor: 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole, RPS6KB1 protein
Authors:Wang, J, Zhong, C, Ding, J.
Deposit date:2013-06-07
Release date:2013-07-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of S6K1 provide insights into the regulation mechanism of S6K1 by the hydrophobic motif
Biochem.J., 454, 2013
6CXA
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BU of 6cxa by Molmil
Structure of alpha-GSA[20,6P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, Beta-2-microglobulin, ...
Authors:Wang, J, Zajonc, D.
Deposit date:2018-04-02
Release date:2019-04-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.
J.Biol.Chem., 294, 2019
4L3L
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BU of 4l3l by Molmil
Crystal structures of human p70S6K1 kinase domain (Zinc anomalous)
Descriptor: 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole, RPS6KB1 protein, ZINC ION
Authors:Wang, J, Zhong, C, Ding, J.
Deposit date:2013-06-06
Release date:2013-07-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of S6K1 provide insights into the regulation mechanism of S6K1 by the hydrophobic motif
Biochem.J., 454, 2013
4L3J
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BU of 4l3j by Molmil
Crystal structures of human p70S6K1 kinase domain
Descriptor: 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole, RPS6KB1 protein, ZINC ION
Authors:Wang, J, Zhong, C, Ding, J.
Deposit date:2013-06-06
Release date:2013-07-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of S6K1 provide insights into the regulation mechanism of S6K1 by the hydrophobic motif
Biochem.J., 454, 2013
2H05
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BU of 2h05 by Molmil
Br Derivitation of A-DNA Octamer GTG(Ubr)ACAC
Descriptor: 5'-D(*GP*TP*GP*(BRU)P*AP*CP*AP*C)-3'
Authors:Jiang, J, Sheng, J, Huang, Z.
Deposit date:2006-05-14
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Selenium derivatization of nucleic acids for crystallography.
Nucleic Acids Res., 35, 2007
2HC7
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BU of 2hc7 by Molmil
2'-selenium-T A-DNA [G(TSe)GTACAC]
Descriptor: 5'-D(*GP*(2ST)P*GP*TP*AP*CP*AP*C)-3'
Authors:Jiang, J, Sheng, J, Huang, Z.
Deposit date:2006-06-15
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of 2'-Selenium modified T A-DNA G(TSe)GTACAC
TO BE PUBLISHED
3ULY
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BU of 3uly by Molmil
Crystal Structure of BROX Bro1 Domain in Complex with the C-Terminal Tails of CHMP5
Descriptor: BRO1 domain-containing protein BROX, Charged multivesicular body protein 5, GLYCEROL
Authors:Jiang, J.S, Mu, R.L, Xiao, T.
Deposit date:2011-11-11
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Two Distinct Binding Modes Define the Interaction of Brox with the C-Terminal Tails of CHMP5 and CHMP4B.
Structure, 20, 2012
3UM3
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BU of 3um3 by Molmil
Crystal structure of the Brox Bro1 domain in complex with the C-terminal tail of CHMP4B
Descriptor: BRO1 domain-containing protein BROX, Charged multivesicular body protein 4b
Authors:Jiang, J.S, Mu, R.L, Xiao, T.
Deposit date:2011-11-12
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Two Distinct Binding Modes Define the Interaction of Brox with the C-Terminal Tails of CHMP5 and CHMP4B.
Structure, 20, 2012
3J02
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BU of 3j02 by Molmil
Lidless D386A Mm-cpn in the pre-hydrolysis ATP-bound state
Descriptor: Lidless D386A Mm-cpn variant
Authors:Zhang, J, Ma, B, DiMaio, F, Douglas, N.R, Joachimiak, L, Baker, D, Frydman, J, Levitt, M, Chiu, W.
Deposit date:2011-02-10
Release date:2011-05-18
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
4I80
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BU of 4i80 by Molmil
Crystal structure of human menin in complex with a high-affinity macrocyclic peptidomimetics
Descriptor: Menin, macrocyclic peptidomimetic
Authors:Huang, J, Lei, M.
Deposit date:2012-12-01
Release date:2013-03-06
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-Based Design of High-Affinity Macrocyclic Peptidomimetics to Block the Menin-Mixed Lineage Leukemia 1 (MLL1) Protein-Protein Interaction.
J.Med.Chem., 56, 2013
3UM2
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BU of 3um2 by Molmil
Crystal structure of the Brox Bro1 domain in complex with the C-terminal tail of CHMP5
Descriptor: BRO1 domain-containing protein BROX, Charged multivesicular body protein 5, GLYCEROL
Authors:Jiang, J.S, Mu, R.L, Xiao, T.
Deposit date:2011-11-12
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.589 Å)
Cite:Two Distinct Binding Modes Define the Interaction of Brox with the C-Terminal Tails of CHMP5 and CHMP4B.
Structure, 20, 2012
4QLC
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BU of 4qlc by Molmil
Crystal structure of chromatosome at 3.5 angstrom resolution
Descriptor: CITRIC ACID, DNA (167-mer), H5, ...
Authors:Jiang, J.S, Zhou, B.R, Xiao, T.S, Bai, Y.W.
Deposit date:2014-06-11
Release date:2015-07-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.503 Å)
Cite:Structural Mechanisms of Nucleosome Recognition by Linker Histones.
Mol.Cell, 33 Suppl 1, 2015
3WH9
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BU of 3wh9 by Molmil
The ligand-free structure of ManBK from Aspergillus niger BK01
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Huang, J.W, Chen, C.C, Huang, C.H, Huang, T.Y, Wu, T.H, Cheng, Y.S, Ko, T.P, Lin, C.Y, Liu, J.R, Guo, R.T.
Deposit date:2013-08-22
Release date:2014-10-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural Analysis and Rational Design to Improve Specific Activity of beta-Mannanase from Aspergillus Niger BK01
To be Published
7CCP
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BU of 7ccp by Molmil
EFFECT OF ARGININE-48 REPLACEMENT ON THE REACTION BETWEEN CYTOCHROME C PEROXIDASE AND HYDROGEN PEROXIDE
Descriptor: CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Wang, J, Miller, M.A, Kraut, J.
Deposit date:1993-06-07
Release date:1993-10-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Effect of arginine-48 replacement on the reaction between cytochrome c peroxidase and hydrogen peroxide.
Biochemistry, 32, 1993
7WKJ
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BU of 7wkj by Molmil
A COVID-19 T-cell response detection method based on a newly identified human CD8+ T cell epitope from SARS-CoV-2-Hubei Province, 2021.
Descriptor: Beta-2-microglobulin, LYS-THR-PHE-PRO-PRO-THR-GLU-PRO-LYS, MHC class I antigen
Authors:Zhang, J, Lu, D, Li, M, Liu, M.S, Yao, S.J, Zhan, J.B, Liu, J, Gao, G.F.
Deposit date:2022-01-10
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A COVID-19 T-Cell Response Detection Method Based on a Newly Identified Human CD8 + T Cell Epitope from SARS-CoV-2 - Hubei Province, China, 2021.
China CDC Wkly, 4, 2022
6K3E
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BU of 6k3e by Molmil
LSD1/Co-Rest structure with an inhibitor
Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-PCPA derivative, ...
Authors:Wang, J.
Deposit date:2019-05-17
Release date:2020-05-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:LSD1/Co-Rest structure with an inhibitor
To Be Published
5ZY9
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BU of 5zy9 by Molmil
Structural basis for a tRNA synthetase
Descriptor: (1R,2R)-2-[(2S,4E,6E,8R,9S,11R,13S,15S,16S)-7-cyano-8,16-dihydroxy-9,11,13,15-tetramethyl-18-oxooxacyclooctadeca-4,6-dien-2-yl]cyclopentanecarboxylic acid, Threonyl-tRNA synthase, ZINC ION
Authors:Zhang, J.
Deposit date:2018-05-23
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for inhibition of translational functions on a tRNA synthetase
To Be Published
8IFK
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BU of 8ifk by Molmil
Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex
Descriptor: MAGNESIUM ION, Piwi domain-containing protein, TIR domain-containing protein, ...
Authors:Zhang, J.T, Jia, N.
Deposit date:2023-02-18
Release date:2024-01-17
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system.
Nat.Chem.Biol., 20, 2024
7W1S
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BU of 7w1s by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-007
Descriptor: Nanobody Nb-007, Spike protein S1
Authors:Yang, J, Lin, S, Sun, H.L, Lu, G.W.
Deposit date:2021-11-20
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:A Potent Neutralizing Nanobody Targeting the Spike Receptor-Binding Domain of SARS-CoV-2 and the Structural Basis of Its Intimate Binding.
Front Immunol, 13, 2022
7WSB
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BU of 7wsb by Molmil
The ternary complex structure of FtmOx1 with a-ketoglutarate and 13-oxo-fumitremorgin B
Descriptor: 13-Oxofumitremorgin B, 2-OXOGLUTARIC ACID, COBALT (II) ION, ...
Authors:Wang, J, Wang, X.Y, Wang, Y.Y, Yan, W.P.
Deposit date:2022-01-28
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Dissecting the Mechanism of the Nonheme Iron Endoperoxidase FtmOx1 Using Substrate Analogues.
Jacs Au, 2, 2022
6K1H
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BU of 6k1h by Molmil
Structure of membrane protein
Descriptor: PTS mannose transporter subunit IID, PTS system mannose-specific EIIC component, alpha-D-mannopyranose
Authors:Wang, J.W, Zeng, J.W.
Deposit date:2019-05-10
Release date:2019-07-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structure of the mannose transporter of the bacterial phosphotransferase system.
Cell Res., 29, 2019

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