7DN2
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![BU of 7dn2 by Molmil](/molmil-images/mine/7dn2) | Acidic stable capsid structure of Helicobacter pylori bacteriophage KHP30 | 分子名称: | Cement protein gp15, Major structural protein ORF14 | 著者 | Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | 登録日 | 2020-12-08 | 公開日 | 2021-10-27 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (2.7 Å) | 主引用文献 | Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy. Structure, 30, 2022
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7DOU
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![BU of 7dou by Molmil](/molmil-images/mine/7dou) | Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40 | 分子名称: | Cement protein gp16 | 著者 | Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | 登録日 | 2020-12-17 | 公開日 | 2021-10-27 | 最終更新日 | 2024-06-05 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy. Structure, 30, 2022
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7DOD
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![BU of 7dod by Molmil](/molmil-images/mine/7dod) | Capsid structure of human sapovirus | 分子名称: | Calicivirin | 著者 | Miyazaki, N, Murakami, K, Oka, T, Iwasaki, K, Katayama, K, Murata, K. | 登録日 | 2020-12-14 | 公開日 | 2021-12-15 | 最終更新日 | 2024-06-05 | 実験手法 | ELECTRON MICROSCOPY (2.9 Å) | 主引用文献 | Atomic structure of human sapovirus capsid by single particle cryo-electron microscopy To Be Published
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3VKF
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![BU of 3vkf by Molmil](/molmil-images/mine/3vkf) | Crystal Structure of Neurexin 1beta/Neuroligin 1 complex | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-1-beta, ... | 著者 | Tanaka, H, Miyazaki, N, Nogi, T, Iwasaki, K, Takagi, J. | 登録日 | 2011-11-15 | 公開日 | 2012-08-01 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin. Cell Rep, 2, 2012
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4P7W
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![BU of 4p7w by Molmil](/molmil-images/mine/4p7w) | L-proline-bound L-proline cis-4-hydroxylase | 分子名称: | 2-OXOGLUTARIC ACID, COBALT (II) ION, L-proline cis-4-hydroxylase, ... | 著者 | Shomura, Y, Koketsu, K, Moriwaki, K, Hayashi, M, Mitsuhashi, S, Hara, R, Kino, K, Higuchi, Y. | 登録日 | 2014-03-28 | 公開日 | 2014-09-17 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Refined Regio- and Stereoselective Hydroxylation of l-Pipecolic Acid by Protein Engineering of l-Proline cis-4-Hydroxylase Based on the X-ray Crystal Structure. Acs Synth Biol, 4, 2015
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3MPW
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![BU of 3mpw by Molmil](/molmil-images/mine/3mpw) | Structure of EUTM in 2-D protein membrane | 分子名称: | Ethanolamine utilization protein eutM, PHOSPHATE ION | 著者 | Sagermann, M, Takenoya, M, Nikolakakis, K. | 登録日 | 2010-04-27 | 公開日 | 2011-05-11 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli. J.Bacteriol., 192, 2010
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7D6J
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![BU of 7d6j by Molmil](/molmil-images/mine/7d6j) | Human serum albumin complexed with benzbromarone | 分子名称: | Serum albumin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone | 著者 | Kawai, A, Yamasaki, K. | 登録日 | 2020-09-30 | 公開日 | 2021-02-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.29 Å) | 主引用文献 | Interaction of Benzbromarone with Subdomains IIIA and IB/IIA on Human Serum Albumin as the Primary and Secondary Binding Regions. Mol Pharm., 18, 2021
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2RUJ
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![BU of 2ruj by Molmil](/molmil-images/mine/2ruj) | Solution structure of MTSL spin-labeled Schizosaccharomyces pombe Sin1 CRIM domain | 分子名称: | Stress-activated map kinase-interacting protein 1 | 著者 | Furuita, K, Kataoka, S, Sugiki, T, Kobayashi, N, Ikegami, T, Shiozaki, K, Fujiwara, T, Kojima, C. | 登録日 | 2014-07-24 | 公開日 | 2015-07-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints J.Biomol.Nmr, 61, 2015
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6LFF
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![BU of 6lff by Molmil](/molmil-images/mine/6lff) | transcription factor SATB1 CUTr1 domain in complex with a phosphorothioate DNA | 分子名称: | DNA (5'-D(*GP*(C7R)P*(PST)P*AP*AP*TP*AP*TP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*(AS)P*(PST)P*(AS)P*(PST)P*TP*AP*GP*C)-3'), DNA-binding protein SATB1 | 著者 | Akutsu, Y, Kubota, T, Yamasaki, T, Yamasaki, K. | 登録日 | 2019-12-02 | 公開日 | 2020-04-01 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | Enhanced affinity of racemic phosphorothioate DNA with transcription factor SATB1 arising from diastereomer-specific hydrogen bonds and hydrophobic contacts. Nucleic Acids Res., 48, 2020
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2GCC
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![BU of 2gcc by Molmil](/molmil-images/mine/2gcc) | SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE | 分子名称: | ATERF1 | 著者 | Allen, M.D, Yamasaki, K, Ohme-Takagi, M, Tateno, M, Suzuki, M. | 登録日 | 1998-03-13 | 公開日 | 1999-03-23 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J., 17, 1998
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3VP9
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![BU of 3vp9 by Molmil](/molmil-images/mine/3vp9) | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant | 分子名称: | 1,4-DIETHYLENE DIOXIDE, General transcriptional corepressor TUP1 | 著者 | Matsumura, H, Kusaka, N, Nakamura, T, Tanaka, N, Sagegami, K, Uegaki, K, Inoue, T, Mukai, Y. | 登録日 | 2012-02-28 | 公開日 | 2012-06-13 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.799 Å) | 主引用文献 | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications J.Biol.Chem., 287, 2012
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7D4C
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![BU of 7d4c by Molmil](/molmil-images/mine/7d4c) | Structure of L-lysine oxidase precursor | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, L-Lysine alpha-oxidase, PHOSPHATE ION | 著者 | Ito, N, Kitagawa, M, Matsumoto, Y, Inagaki, K, Imada, K. | 登録日 | 2020-09-23 | 公開日 | 2021-02-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.97 Å) | 主引用文献 | Structural basis of enzyme activity regulation by the propeptide of l-lysine alpha-oxidase precursor from Trichoderma viride . J Struct Biol X, 5, 2021
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7D4D
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![BU of 7d4d by Molmil](/molmil-images/mine/7d4d) | Structure of L-lysine oxidase precursor in complex with L-lysine (1.24M) | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, L-Lysine alpha-oxidase, LYSINE | 著者 | Kitagawa, M, Ito, N, Matsumoto, Y, Inagaki, K, Imada, K. | 登録日 | 2020-09-23 | 公開日 | 2021-02-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | 主引用文献 | Structural basis of enzyme activity regulation by the propeptide of l-lysine alpha-oxidase precursor from Trichoderma viride . J Struct Biol X, 5, 2021
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7D4E
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![BU of 7d4e by Molmil](/molmil-images/mine/7d4e) | Structure of L-lysine oxidase precursor in complex with L-lysine (1.0 M) | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, L-Lysine alpha-oxidase, LYSINE | 著者 | Kitagawa, M, Ito, N, Matsumoto, Y, Inagaki, K, Imada, K. | 登録日 | 2020-09-23 | 公開日 | 2021-02-10 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural basis of enzyme activity regulation by the propeptide of l-lysine alpha-oxidase precursor from Trichoderma viride . J Struct Biol X, 5, 2021
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8GS6
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![BU of 8gs6 by Molmil](/molmil-images/mine/8gs6) | Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1) | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein | 著者 | Anraku, Y, Tabata-Sasaki, K, Kita, S, Fukuhara, H, Maenaka, K, Hashiguchi, T. | 登録日 | 2022-09-05 | 公開日 | 2022-10-26 | 最終更新日 | 2023-03-29 | 実験手法 | ELECTRON MICROSCOPY (2.86 Å) | 主引用文献 | Virological characteristics of the SARS-CoV-2 Omicron BA.2.75 variant. Cell Host Microbe, 30, 2022
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3VK3
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![BU of 3vk3 by Molmil](/molmil-images/mine/3vk3) | Crystal Structure of L-Methionine gamma-Lyase from Pseudomonas putida C116H Mutant Complexed with L-methionine | 分子名称: | METHIONINE, Methionine gamma-lyase | 著者 | Fukumoto, M, Kudou, D, Murano, S, Shiba, T, Sato, D, Tamura, T, Harada, S, Inagaki, K. | 登録日 | 2011-11-07 | 公開日 | 2012-09-19 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The role of amino acid residues in the active site of L-methionine gamma-lyase from Pseudomonas putida. Biosci.Biotechnol.Biochem., 76, 2012
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3VOV
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![BU of 3vov by Molmil](/molmil-images/mine/3vov) | Crystal Structure of ROK Hexokinase from Thermus thermophilus | 分子名称: | GLYCEROL, Glucokinase, ZINC ION | 著者 | Nakamura, T, Kashima, Y, Mine, S, Oku, T, Uegaki, K. | 登録日 | 2012-02-21 | 公開日 | 2012-06-27 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | 主引用文献 | Characterization and crystal structure of the thermophilic ROK hexokinase from Thermus thermophilus J.Biosci.Bioeng., 2012
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3VK4
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![BU of 3vk4 by Molmil](/molmil-images/mine/3vk4) | Crystal Structure of L-Methionine gamma-Lyase from Pseudomonas putida C116H Mutant complexed with L-homocysteine | 分子名称: | 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Methionine gamma-lyase | 著者 | Fukumoto, M, Kudou, D, Murano, S, Shiba, T, Sato, D, Tamura, T, Harada, S, Inagaki, K. | 登録日 | 2011-11-07 | 公開日 | 2012-09-19 | 最終更新日 | 2024-03-06 | 実験手法 | X-RAY DIFFRACTION (2.61 Å) | 主引用文献 | The role of amino acid residues in the active site of L-methionine gamma-lyase from Pseudomonas putida. Biosci.Biotechnol.Biochem., 76, 2012
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6LXV
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![BU of 6lxv by Molmil](/molmil-images/mine/6lxv) | Cryo-EM structure of phosphoketolase from Bifidobacterium longum | 分子名称: | CALCIUM ION, Phosphoketolase, THIAMINE DIPHOSPHATE | 著者 | Nakata, K, Miyazaki, N, Yamaguchi, H, Hirose, M, Miyano, H, Mizukoshi, T, Kashiwagi, T, Iwasaki, K. | 登録日 | 2020-02-12 | 公開日 | 2021-02-17 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (2.1 Å) | 主引用文献 | High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis. J.Struct.Biol., 214, 2022
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2RT4
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![BU of 2rt4 by Molmil](/molmil-images/mine/2rt4) | |
6AB6
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![BU of 6ab6 by Molmil](/molmil-images/mine/6ab6) | Cryo-EM structure of T=3 Penaeus vannamei nodavirus | 分子名称: | CALCIUM ION, Capsid protein | 著者 | Chen, N.C, Miyazaki, N, Yoshimura, M, Guan, H.H, Lin, C.C, Iwasaki, K, Chen, C.J. | 登録日 | 2018-07-20 | 公開日 | 2019-03-20 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | 主引用文献 | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism. Commun Biol, 2, 2019
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4D7Y
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![BU of 4d7y by Molmil](/molmil-images/mine/4d7y) | Crystal structure of mouse C1QL1 globular domain | 分子名称: | C1Q-RELATED FACTOR, CADMIUM ION, CHLORIDE ION, ... | 著者 | Kakegawa, W, Mitakidis, N, Miura, E, Abe, M, Matsuda, K, Takeo, Y, Kohda, K, Motohashi, J, Takahashi, A, Nagao, S, Muramatsu, S, Watanabe, M, Sakimura, K, Aricescu, A.R, Yuzaki, M. | 登録日 | 2014-12-01 | 公開日 | 2015-01-28 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.44 Å) | 主引用文献 | Anterograde C1Ql1 Signaling is Required in Order to Determine and Maintain a Single-Winner Climbing Fiber in the Mouse Cerebellum Neuron, 85, 2015
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7X30
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![BU of 7x30 by Molmil](/molmil-images/mine/7x30) | Capsid structure of Staphylococcus jumbo bacteriophage S6 | 分子名称: | Hoc-like protein ORF90, Major structural protein ORF12 | 著者 | Koibuchi, W, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | 登録日 | 2022-02-27 | 公開日 | 2023-12-06 | 実験手法 | ELECTRON MICROSCOPY (3.6 Å) | 主引用文献 | Capsid structure of Staphylococcus jumbo bacteriophage S6 To Be Published
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7WMP
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![BU of 7wmp by Molmil](/molmil-images/mine/7wmp) | Tail structure of Helicobacter pylori bacteriophage KHP30 | 分子名称: | Adaptor protein gp12, Nozzle protein gp25, Portal protein | 著者 | Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | 登録日 | 2022-01-15 | 公開日 | 2023-03-01 | 最終更新日 | 2024-06-26 | 実験手法 | ELECTRON MICROSCOPY (3.6 Å) | 主引用文献 | Cryo-EM structure of Helicobacter pylori bacteriophage KHP30 To Be Published
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5AWW
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![BU of 5aww by Molmil](/molmil-images/mine/5aww) | Precise Resting State of Thermus thermophilus SecYEG | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Protein translocase subunit SecE, Protein translocase subunit SecY, ... | 著者 | Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T. | 登録日 | 2015-07-10 | 公開日 | 2015-11-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.724 Å) | 主引用文献 | Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State. Cell Rep, 13, 2015
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