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PDB: 146 results

5U0M
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Fatty aldehyde dehydrogenase from Marinobacter aquaeolei VT8 and cofactor complex
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, N-succinylglutamate 5-semialdehyde dehydrogenase, ...
Authors:Shi, K, Mulliner, K, Barney, B.M, Aihara, H.
Deposit date:2016-11-24
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.075 Å)
Cite:Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket.
Appl. Environ. Microbiol., 83, 2017
5CQK
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Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, SODIUM ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
5CQH
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Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
8EUO
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BU of 8euo by Molmil
Hydroxynitrile Lyase from Hevea brasiliensis with Seven Mutations
Descriptor: (S)-hydroxynitrile lyase
Authors:Greenberg, L.R, Walsh, M.E, Kazlauskas, R.J, Pierce, C.T, Shi, K, Aihara, H, Evans, R.L.
Deposit date:2022-10-19
Release date:2022-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:to be published
To Be Published
5CQD
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Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
5SXH
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BU of 5sxh by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: 1,2-ETHANEDIOL, DNA dC->dU-editing enzyme APOBEC-3B, ZINC ION
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2016-08-09
Release date:2017-12-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B.
Sci Rep, 7, 2017
5SWW
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BU of 5sww by Molmil
Crystal Structure of Human APOBEC3A complexed with ssDNA
Descriptor: DNA 15-Mer, DNA dC->dU-editing enzyme APOBEC-3A, GLYCEROL, ...
Authors:Shi, K, Banerjee, S, Kurahashi, K, Aihara, H.
Deposit date:2016-08-09
Release date:2016-12-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.151 Å)
Cite:Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Nat. Struct. Mol. Biol., 24, 2017
5SXG
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BU of 5sxg by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: 1,3-PROPANDIOL, DNA dC->dU-editing enzyme APOBEC-3B, IMIDAZOLE, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2016-08-09
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B.
Sci Rep, 7, 2017
5TD5
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BU of 5td5 by Molmil
Crystal Structure of Human APOBEC3B variant complexed with ssDNA
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*TP*TP*CP*AP*T)-3'), ...
Authors:Shi, K, Banerjee, S, Kurahashi, K, Aihara, H.
Deposit date:2016-09-16
Release date:2016-12-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.718 Å)
Cite:Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Nat. Struct. Mol. Biol., 24, 2017
5CQI
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BU of 5cqi by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: DNA dC-dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
8E14
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BU of 8e14 by Molmil
Cryo-EM structure of Rous sarcoma virus strand transfer complex
Descriptor: DNA (42-MER), DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*TP*CP*TP*TP*CP*TP*TP*TP*C)-3'), ...
Authors:Pandey, K.K, Bera, S, Shi, K, Aihara, H, Grandgenett, D.P.
Deposit date:2022-08-09
Release date:2023-04-26
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Molecular determinants for Rous sarcoma virus intasome assemblies involved in retroviral integration.
J.Biol.Chem., 299, 2023
6VK8
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BU of 6vk8 by Molmil
Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex with small organic carboxylate at active center
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, FE (III) ION, ...
Authors:Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D.
Deposit date:2020-01-18
Release date:2020-08-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel.
Biochemistry, 59, 2020
4E0Z
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BU of 4e0z by Molmil
Protelomerase tela R205A covalently complexed with substrate DNA
Descriptor: DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*A*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), GLYCEROL, ...
Authors:Shi, K, Aihara, H.
Deposit date:2012-03-05
Release date:2013-02-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E0P
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BU of 4e0p by Molmil
Protelomerase tela covalently complexed with substrate DNA
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ...
Authors:Shi, K, Aihara, H.
Deposit date:2012-03-05
Release date:2013-02-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
6VK5
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BU of 6vk5 by Molmil
Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, CHLORIDE ION, ...
Authors:Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D.
Deposit date:2020-01-18
Release date:2020-08-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel.
Biochemistry, 59, 2020
6WGX
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BU of 6wgx by Molmil
Cocrystal of BRD4(D1) with a selective inhibitor
Descriptor: 1,2-ETHANEDIOL, 4-(1-{1-[2-(dimethylamino)ethyl]piperidin-4-yl}-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-5-yl)-N-(3,5-dimethylphenyl)pyrimidin-2-amine, Bromodomain-containing protein 4
Authors:Johnson, J.A, Cui, H, Shi, K, Aihara, H, Pomerantz, W.C.K.
Deposit date:2020-04-06
Release date:2020-10-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Selective N-Terminal BET Bromodomain Inhibitors by Targeting Non-Conserved Residues and Structured Water Displacement*.
Angew.Chem.Int.Ed.Engl., 60, 2021
8VJY
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BU of 8vjy by Molmil
Structure of Human Neurolysin in complex with Neurotensin peptide
Descriptor: 1,2-ETHANEDIOL, Neurolysin, mitochondrial, ...
Authors:Shi, K, Aihara, H.
Deposit date:2024-01-08
Release date:2024-08-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis of divergent substrate recognition and inhibition of human neurolysin.
Sci Rep, 14, 2024
8VA0
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BU of 8va0 by Molmil
X-ray crystal structure of JGFN4 N76D complexed with fentanyl in dimer form
Descriptor: 1,2-ETHANEDIOL, JGFN4, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide, ...
Authors:Shi, K, Moller, N, Aihara, H.
Deposit date:2023-12-10
Release date:2024-08-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Identification and biophysical characterization of a novel domain-swapped camelid antibody specific for fentanyl.
J.Biol.Chem., 300, 2024
8V9W
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BU of 8v9w by Molmil
X-ray crystal structure of JGFN4 complexed with fentanyl
Descriptor: 1,2-ETHANEDIOL, JGFN4, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide
Authors:Moller, N, Shi, K, Aihara, H.
Deposit date:2023-12-10
Release date:2024-08-07
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Identification and biophysical characterization of a novel domain-swapped camelid antibody specific for fentanyl.
J.Biol.Chem., 300, 2024
8VJU
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BU of 8vju by Molmil
Structure of Human Neurolysin in complex with dynorphin A13 peptide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Dynorphin A(1-13), ...
Authors:Shi, K, Aihara, H.
Deposit date:2024-01-08
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis of divergent substrate recognition and inhibition of human neurolysin.
Sci Rep, 14, 2024
8VJV
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BU of 8vjv by Molmil
Structure of Human Neurolysin in complex with dynorphin A8(1-8) peptide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Dynorphin A(1-8), ...
Authors:Shi, K, Aihara, H.
Deposit date:2024-01-08
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural basis of divergent substrate recognition and inhibition of human neurolysin.
Sci Rep, 14, 2024
8VJW
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BU of 8vjw by Molmil
Structure of Human Neurolysin in complex with angiotensin I peptide
Descriptor: Angiotensin-1 peptide C-terminal end, Angiotensin-1 peptide N-terminal end, Neurolysin, ...
Authors:Shi, K, Aihara, H.
Deposit date:2024-01-08
Release date:2024-08-21
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.491 Å)
Cite:Structural basis of divergent substrate recognition and inhibition of human neurolysin.
Sci Rep, 14, 2024
6VOY
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BU of 6voy by Molmil
Cryo-EM structure of HTLV-1 instasome
Descriptor: DNA (25-MER), DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3'), DNA-binding protein 7d, ...
Authors:Bhatt, V, Shi, K, Sundborger, A, Aihara, H.
Deposit date:2020-02-01
Release date:2020-07-01
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of host protein hijacking in human T-cell leukemia virus integration.
Nat Commun, 11, 2020
6VK7
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BU of 6vk7 by Molmil
Crystal Structure of reduced Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase
Descriptor: FE (III) ION, Methane monooxygenase, Methane monooxygenase component A alpha chain
Authors:Jones, J.C, Banerjee, R, Shi, K, Aihara, H, Lipscomb, J.D.
Deposit date:2020-01-18
Release date:2020-08-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural Studies of theMethylosinus trichosporiumOB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel.
Biochemistry, 59, 2020
5W8X
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BU of 5w8x by Molmil
Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP
Descriptor: Lipid-A-disaccharide synthase, URIDINE-5'-DIPHOSPHATE
Authors:Bohl, T.E, Aihara, H, Shi, K, Lee, J.K.
Deposit date:2017-06-22
Release date:2018-01-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of lipid A disaccharide synthase LpxB from Escherichia coli.
Nat Commun, 9, 2018

227561

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