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PDB: 88911 results

3ZJ5
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NEUROSPORA CRASSA CATALASE-3 EXPRESSED IN E. COLI, ORTHORHOMBIC FORM.
Descriptor: 1,2-ETHANEDIOL, 2-(2-ETHOXYETHOXY)ETHANOL, CATALASE-3, ...
Authors:Zarate-Romero, A, Rudino-Pinera, E.
Deposit date:2013-01-17
Release date:2013-07-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Conformational Stability and Crystal Packing: Polymorphism in Neurospora Crassa Cat-3
Acta Crystallogr.,Sect.F, 69, 2013
6E87
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Crystal structure of ferrous form of the crosslinked human cysteine dioxygenase in the anaerobic condition
Descriptor: Cysteine dioxygenase type 1, FE (II) ION, GLYCEROL, ...
Authors:Liu, A, Li, J.
Deposit date:2018-07-27
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Probing the Cys-Tyr Cofactor Biogenesis in Cysteine Dioxygenase by the Genetic Incorporation of Fluorotyrosine.
Biochemistry, 58, 2019
5AP3
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Naturally Occurring Mutations in the MPS1 Gene Predispose Cells to Kinase Inhibitor Drug Resistance.
Descriptor: 1,2-ETHANEDIOL, 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, 9-CYCLOPENTYL-2-[[2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]-PHENYL]AMINO]-7-METHYL-7,9-DIHYDRO-8H-PURIN-8-ONE, ...
Authors:Gurden, M.D, Westwood, I.M, Faisal, A, Naud, S, Cheung, K.J, McAndrew, C, Wood, A, Schmitt, J, Boxall, K, Mak, G, Workman, P, Burke, R, Hoelder, S, Blagg, J, van Montfort, R.L.M, Linardopoulos, S.
Deposit date:2015-09-14
Release date:2015-09-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Naturally Occurring Mutations in the Mps1 Gene Predispose Cells to Kinase Inhibitor Drug Resistance.
Cancer Res., 75, 2015
7SKY
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BU of 7sky by Molmil
Pertussis toxin S1 bound to NAD+
Descriptor: IODIDE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Pertussis toxin subunit 1
Authors:Littler, D.R, Beddoe, T, Pulliainen, A, Rossjohn, J.
Deposit date:2021-10-21
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.37000132 Å)
Cite:Crystal structures of pertussis toxin with NAD + and analogs provide structural insights into the mechanism of its cytosolic ADP-ribosylation activity.
J.Biol.Chem., 298, 2022
5AMH
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Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, trigonal crystal form
Descriptor: CALCIUM ION, CEREBLON ISOFORM 4, CHLORIDE ION, ...
Authors:Hartmann, M.D, Lupas, A.N, Hernandez Alvarez, B.
Deposit date:2015-03-10
Release date:2015-07-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Dynamics of the Cereblon Ligand Binding Domain.
Plos One, 10, 2015
3ZYC
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BU of 3zyc by Molmil
DYNAMIN 1 GTPASE GED FUSION DIMER COMPLEXED WITH GMPPCP
Descriptor: DYNAMIN-1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
Authors:Chappie, J.S, Mears, J.A, Fang, S, Leonard, M, Schmid, S.L, Milligan, R.A, Hinshaw, J.E, Dyda, F.
Deposit date:2011-08-22
Release date:2011-10-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Pseudoatomic Model of the Dynamin Polymer Identifies a Hydrolysis-Dependent Powerstroke.
Cell(Cambridge,Mass.), 147, 2011
6EB7
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YycF homologue (SP1227) Receiver Domain Activated by BeF3
Descriptor: BERYLLIUM TRIFLUORIDE ION, DNA-binding response regulator, MANGANESE (II) ION
Authors:Riboldi-Tunnicliffe, A, Issacs, N.W.
Deposit date:2018-08-05
Release date:2019-11-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:YycF homologue (SP1227) Receiver Domain Activated by BeF3
To Be Published
3ZBL
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Crystal structure of SCP2 thiolase from Leishmania mexicana: The C123S mutant.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-KETOACYL-COA THIOLASE-LIKE PROTEIN, CHLORIDE ION, ...
Authors:Harijan, R.K, Kiema, T.-R, Weiss, M.S, Michels, P.A.M, Wierenga, R.K.
Deposit date:2012-11-10
Release date:2013-08-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Scp2-Thiolases of Trypanosomatidae, Human Pathogens Causing Widespread Tropical Diseases: The Importance for Catalysis of the Cysteine of the Unique Hdcf Loop.
Biochem.J., 455, 2013
3ZQJ
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BU of 3zqj by Molmil
Mycobacterium tuberculosis UvrA
Descriptor: UVRABC SYSTEM PROTEIN A, ZINC ION
Authors:Rossi, F, Khanduja, J.S, Bortoluzzi, A, Houghton, J, Sander, P, Guthlein, C, Davis, E.O, Springer, B, Bottger, E.C, Relini, A, Penco, A, Muniyappa, K, Rizzi, M.
Deposit date:2011-06-09
Release date:2011-06-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The Biological and Structural Characterization of Mycobacterium Tuberculosis Uvra Provides Novel Insights Into its Mechanism of Action
Nucleic Acids Res., 39, 2011
3ZBO
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A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures
Descriptor: ALKF, CHLORIDE ION
Authors:Backe, P.H, Simm, R, Laerdahl, J.K, Dalhus, B, Fagerlund, A, Okstad, O.A, Rognes, T, Alseth, I, Kolsto, A.-B, Bjoras, M.
Deposit date:2012-11-12
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:A New Family of Proteins Related to the Heat-Like Repeat DNA Glycosylases with Affinity for Branched DNA Structures.
J.Struct.Biol., 183, 2013
6EGM
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BU of 6egm by Molmil
Crystal Structure of a de novo Three-stranded Coiled Coil Peptide Containing D-Leu in a d-site Position of a Tris-thiolate Binding Site
Descriptor: Apo-(GRAND CoilSerL16CL19(DLE))3, ZINC ION
Authors:Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-20
Release date:2019-04-03
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation.
Chemistry, 25, 2019
5BQI
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BU of 5bqi by Molmil
Discovery of a Potent and Selective mPGES-1 Inhibitor for the Treatment of Pain
Descriptor: (2-hydroxyethoxy)acetaldehyde, 2-(difluoromethyl)-5-{[(2-methylpropanoyl)amino]methyl}-N-{5-methyl-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-2-yl}pyridine-3-carboxamide, GLUTATHIONE, ...
Authors:Fisher, M.J, Schiffler, M.A, Kuklish, S.L, Antonysamy, S, Luz, J.G.
Deposit date:2015-05-29
Release date:2016-04-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Discovery and Characterization of 2-Acylaminoimidazole Microsomal Prostaglandin E Synthase-1 Inhibitors.
J.Med.Chem., 59, 2016
5B5H
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BU of 5b5h by Molmil
Hydrophobic ice-binding site confer hyperactivity on antifreeze protein from a snow mold fungus
Descriptor: Antifreeze protein, SODIUM ION, SULFATE ION
Authors:Cheng, J, Hanada, Y, Miura, A, Tsuda, S, Kondo, H.
Deposit date:2016-05-06
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1 Å)
Cite:Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus.
Biochem.J., 473, 2016
5B5Q
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BU of 5b5q by Molmil
1.7 Angstroms structure of ChlaDub1 from Chlamydia Trachomatis
Descriptor: CHLORIDE ION, Membrane thiol protease
Authors:Ramirez, Y.A, Kisker, C, Sauer, F.
Deposit date:2016-05-13
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense
Elife, 6, 2017
3ZQF
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BU of 3zqf by Molmil
Structure of Tetracycline repressor in complex with antiinducer peptide-TAP1
Descriptor: ANTI-INDUCER PEPTIDE TAP1, TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON TN10, TETRACYCLINE REPRESSOR PROTEIN CLASS D
Authors:Sevvana, M, Goeke, D, Stoeckle, C, Kaspar, D, Grubmueller, S, Goetz, C, Wimmer, C, Berens, C, Klotzsche, M, Muller, Y.A, Hillen, W.
Deposit date:2011-06-09
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:An Exclusive Alpha/Beta Code Directs Allostery in Tetr-Peptide Complexes.
J.Mol.Biol., 416, 2012
3ZQN
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BU of 3zqn by Molmil
Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 2)
Descriptor: TERMINASE SMALL SUBUNIT
Authors:Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A.
Deposit date:2011-06-10
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor.
Proc.Natl.Acad.Sci.USA, 109, 2012
4MHV
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BU of 4mhv by Molmil
Crystal structure of the PNT domain of human ETS2
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Newman, J.A, Cooper, C.D.O, Krojer, T, Shrestha, L, Burgess-brown, N, Arrowsmith, C.H, Bountra, C, Edwards, A, Gileadi, O.
Deposit date:2013-08-30
Release date:2013-09-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of the PNT domain of human ETS2
To be Published
2OZQ
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BU of 2ozq by Molmil
Crystal Structure of apo-MUP
Descriptor: CADMIUM ION, Novel member of the major urinary protein (Mup) gene family, SODIUM ION
Authors:Dennis, C.A, Homans, S.W, Phillips, S.E.V, Syme, N.R.
Deposit date:2007-02-27
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Origin of heat capacity changes in a "nonclassical" hydrophobic interaction.
Chembiochem, 8, 2007
5WSX
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BU of 5wsx by Molmil
The crystal structure of SAV606
Descriptor: Uncharacterized protein
Authors:Chisuga, T, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2016-12-08
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of the dual-function thioesterase SAV606 unravels the mechanism of Michael addition of glycine to an alpha , beta-unsaturated thioester.
J. Biol. Chem., 292, 2017
8PFD
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BU of 8pfd by Molmil
Crystal structure of binary complex between Aster yellows witches'-broom phytoplasma effector SAP05 and the von Willebrand Factor Type A domain of the proteasomal ubiquitin receptor Rpn10 from Arabidopsis thaliana
Descriptor: 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein
Authors:Huang, W, Liu, Q, Maqbool, A, Stevenson, C.E.M, Lawson, D.M, Kamoun, S, Hogenhout, S.A.
Deposit date:2023-06-15
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation.
Proc.Natl.Acad.Sci.USA, 120, 2023
2OYT
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BU of 2oyt by Molmil
Crystal Structure of UNG2/DNA(TM)
Descriptor: DNA strand1, DNA strand2, Uracil-DNA glycosylase
Authors:Bianchet, M.A, Krosky, D.J, Stivers, J.T, Amzel, L.M.
Deposit date:2007-02-22
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Enzymatic capture of an extrahelical thymine in the search for uracil in DNA.
Nature, 449, 2007
4MD7
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BU of 4md7 by Molmil
Crystal Structure of full-length symmetric CK2 holoenzyme
Descriptor: Casein kinase II subunit alpha, Casein kinase II subunit beta, ZINC ION
Authors:Lolli, G, Ranchio, A, Battistutta, R.
Deposit date:2013-08-22
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Active Form of the Protein Kinase CK2 alpha 2 beta 2 Holoenzyme Is a Strong Complex with Symmetric Architecture.
Acs Chem.Biol., 9, 2014
3ZSC
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BU of 3zsc by Molmil
Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima
Descriptor: 4-deoxy-beta-L-threo-hex-4-enopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid, GLYCEROL, PECTATE TRISACCHARIDE-LYASE, ...
Authors:McDonough, M.A, Thymark, M, Frisner, H, Hotchkiss, A, Sonksen, C, Bjornvad, M, Johansen, K.S, Larsen, S.
Deposit date:2011-06-24
Release date:2012-07-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Catalytic Function and Substrate Recognition of the Pectate Lyase from Thermotoga Maritima
To be Published
7Z9L
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BU of 7z9l by Molmil
Phen-DC3 intercalation causes hybrid-to-antiparallel transformation of human telomeric DNA G-quadruplex
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide
Authors:Ghosh, A, Trajkovski, M, Teulade-Fichou, M.P, Gabelica, V, Plavec, J.
Deposit date:2022-03-21
Release date:2022-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Phen-DC 3 Induces Refolding of Human Telomeric DNA into a Chair-Type Antiparallel G-Quadruplex through Ligand Intercalation.
Angew.Chem.Int.Ed.Engl., 61, 2022
1U1T
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BU of 1u1t by Molmil
Hfq protein from Pseudomonas aeruginosa. High-salt crystals
Descriptor: Hfq protein
Authors:Nikulin, A.D, Stolboushkina, E.A, Perederina, A.A, Vassilieva, I.M, Blaesi, U, Moll, I, Kachalova, G, Yokoyama, S, Vassylyev, D, Garber, M, Nikonov, S.V, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-16
Release date:2005-01-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005

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