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PDB: 88911 results

6XI0
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R. capsulatus cyt bc1 (CIII2) at 3.3A
Descriptor: Cytochrome b, Cytochrome c1, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Steimle, S, Van Eeuwen, T, Ozturk, Y, Kim, H.J, Braitbard, M, Selamoglu, N, Garcia, B.A, Schneidman-Duhovny, D, Murakami, K, Daldal, F.
Deposit date:2020-06-19
Release date:2020-12-30
Last modified:2021-03-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of engineered active bc 1 -cbb 3 type CIII 2 CIV super-complexes and electronic communication between the complexes.
Nat Commun, 12, 2021
8CKZ
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HIV-1 mature capsid pentamer from CA-IP6 CLPs bound to Nup153 peptide
Descriptor: Gag polyprotein
Authors:Stacey, J.C.V, Briggs, J.A.G.
Deposit date:2023-02-16
Release date:2023-04-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Two structural switches in HIV-1 capsid regulate capsid curvature and host factor binding.
Proc.Natl.Acad.Sci.USA, 120, 2023
8CKX
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HIV-1 mature capsid hexamer next to pentamer (type I) from CA-IP6 CLPs
Descriptor: Gag polyprotein
Authors:Stacey, J.C.V, Briggs, J.A.G.
Deposit date:2023-02-16
Release date:2023-04-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Two structural switches in HIV-1 capsid regulate capsid curvature and host factor binding.
Proc.Natl.Acad.Sci.USA, 120, 2023
8CKY
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HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to Nup153 peptide
Descriptor: Gag polyprotein, Nuclear pore complex protein Nup153
Authors:Stacey, J.C.V, Briggs, J.A.G.
Deposit date:2023-02-16
Release date:2023-04-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Two structural switches in HIV-1 capsid regulate capsid curvature and host factor binding.
Proc.Natl.Acad.Sci.USA, 120, 2023
7S0H
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Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, S723Y
Descriptor: Terpene synthase
Authors:Ronnebaum, T.A, Christianson, D.W.
Deposit date:2021-08-30
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase.
Biochemistry, 60, 2021
7S0A
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Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, H786A
Descriptor: Terpene synthase
Authors:Ronnebaum, T.A, Christianson, D.W.
Deposit date:2021-08-30
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase.
Biochemistry, 60, 2021
7S0M
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Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, S723T, bound with non-productive isopentenyl diphosphate
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Terpene synthase
Authors:Ronnebaum, T.A, Christianson, D.W.
Deposit date:2021-08-30
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase.
Biochemistry, 60, 2021
8CL3
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HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to Sec24C peptide.
Descriptor: Gag polyprotein, Protein transport protein Sec24C
Authors:Stacey, J.C.V, Briggs, J.A.G.
Deposit date:2023-02-16
Release date:2023-04-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Two structural switches in HIV-1 capsid regulate capsid curvature and host factor binding.
Proc.Natl.Acad.Sci.USA, 120, 2023
7S09
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Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, F760A
Descriptor: Terpene synthase
Authors:Ronnebaum, T.A, Christianson, D.W.
Deposit date:2021-08-30
Release date:2021-10-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase.
Biochemistry, 60, 2021
5AZ1
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Crystal structure of aldo-keto reductase (AKR2E5) complexed with NADPH
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
8PND
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The ES3 intermediate of hydroxymethylbilane synthase R167Q variant
Descriptor: 1,2-ETHANEDIOL, 3-[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-3-(3-hydroxy-3-oxopropyl)-5-methyl-1~{H}-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-1~{H}-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-1~{H}-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-1~{H}-pyrrol-2-yl]methyl]-1~{H}-pyrrol-3-yl]propanoic acid, GLYCEROL, ...
Authors:Saeter, M.C, Bustad, H.J, Laitaoja, M, Janis, J, Martinez, A, Aarsand, A.K, Kallio, J.P.
Deposit date:2023-06-30
Release date:2023-11-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:One ring closer to a closure: the crystal structure of the ES 3 hydroxymethylbilane synthase intermediate.
Febs J., 291, 2024
4MJT
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Crystal structure of the oligomeric pore-forming toxin pro-Monalysin
Descriptor: MONALYSIN, Monalysin, ZINC ION
Authors:Leone, P, Roussel, A.
Deposit date:2013-09-04
Release date:2015-03-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:X-ray and Cryo-electron Microscopy Structures of Monalysin Pore-forming Toxin Reveal Multimerization of the Pro-form.
J.Biol.Chem., 290, 2015
1TX4
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RHO/RHOGAP/GDP(DOT)ALF4 COMPLEX
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, P50-RHOGAP, ...
Authors:Rittinger, K, Walker, P.A, Smerdon, S.J, Gamblin, S.J.
Deposit date:1997-07-29
Release date:1998-09-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure at 1.65 A of RhoA and its GTPase-activating protein in complex with a transition-state analogue.
Nature, 389, 1997
6E8Z
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BU of 6e8z by Molmil
Binary complex of Human glycerol 3-phosphate dehydrogenase with NAD
Descriptor: 1,2-ETHANEDIOL, Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic, ...
Authors:Mydy, L.S, Gulick, A.M.
Deposit date:2018-07-31
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies.
Biochemistry, 58, 2019
6EAQ
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Glycosylated FCGR3B / CD16b in complex with afucosylated IgG1 Fc
Descriptor: Immunoglobulin gamma-1 heavy chain, Low affinity immunoglobulin gamma Fc region receptor III-B, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Roberts, J.T, Barb, A.W.
Deposit date:2018-08-03
Release date:2018-11-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:A single amino acid distorts the Fc gamma receptor IIIb/CD16b structure upon binding immunoglobulin G1 and reduces affinity relative to CD16a.
J. Biol. Chem., 293, 2018
8C5D
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BU of 8c5d by Molmil
Glutathione transferase P1-1 from Mus musculus
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Papageorgiou, A.C.
Deposit date:2023-01-06
Release date:2023-05-24
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Inhibition Analysis and High-Resolution Crystal Structure of Mus musculus Glutathione Transferase P1-1.
Biomolecules, 13, 2023
6XF7
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BU of 6xf7 by Molmil
SLP
Descriptor: Lambda 1 protein
Authors:Sutton, G, Sun, D.P, Fu, X.F, Kotecha, A, Hecksel, G.W, Clare, D.K, Zhang, P, Stuart, D, Boyce, M.
Deposit date:2020-06-15
Release date:2020-09-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Assembly intermediates of orthoreovirus captured in the cell.
Nat Commun, 11, 2020
3ZUP
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BU of 3zup by Molmil
The 3-dimensional structure of MpgP from Thermus thermophilus HB27, in complex with the alpha-mannosylglycerate and orthophosphate reaction products.
Descriptor: (2R)-3-hydroxy-2-(alpha-D-mannopyranosyloxy)propanoic acid, MAGNESIUM ION, MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE, ...
Authors:Goncalves, S, Esteves, A.M, Santos, H, Borges, N, Matias, P.M.
Deposit date:2011-07-19
Release date:2011-10-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:The Three-Dimensional Structure of Mannosyl-3-Phosphoglycerate Phosphatase from Thermus Thermophilus Hb27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily.
Biochemistry, 50, 2011
6EEL
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BU of 6eel by Molmil
Crystal Structure of Myoferlin C2A with divalent cation
Descriptor: Myoferlin, STRONTIUM ION
Authors:Sutton, R.B, Harsini, F.M, Rice, A.M.
Deposit date:2018-08-14
Release date:2019-05-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural Basis for the Distinct Membrane Binding Activity of the Homologous C2A Domains of Myoferlin and Dysferlin.
J.Mol.Biol., 431, 2019
1UD5
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BU of 1ud5 by Molmil
Crystal structure of AmyK38 with rubidium ion
Descriptor: RUBIDIUM ION, SODIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
7RXV
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BU of 7rxv by Molmil
Human Methionine Adenosyltransferase 2A bound to Methylthioadenosine, Malonate (MLA) and MgF3
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, ALANINE, GLYCEROL, ...
Authors:Fedorov, E, Niland, C.N, Schramm, V.L, Ghosh, A.
Deposit date:2021-08-23
Release date:2021-11-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Mechanism of Triphosphate Hydrolysis by Human MAT2A at 1.07 angstrom Resolution.
J.Am.Chem.Soc., 143, 2021
6EN0
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BU of 6en0 by Molmil
Structure of the Tn1549 transposon Integrase (aa 82-397) in complex with circular intermediate DNA (CI5-DNA)
Descriptor: DNA (44-MER), Int protein
Authors:Rubio-Cosials, A, Barabas, O.
Deposit date:2017-10-04
Release date:2018-04-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.
Cell, 173, 2018
5BQH
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Discovery of a Potent and Selective mPGES-1 Inhibitor for the Treatment of Pain
Descriptor: (2-hydroxyethoxy)acetaldehyde, GLUTATHIONE, N-[4-(4-chlorophenyl)-1H-imidazol-2-yl]-2-(difluoromethyl)-5-{[(2-methylpropanoyl)amino]methyl}benzamide, ...
Authors:Fisher, M.J, Schiffler, M.A, Kuklish, S.L, Antonysamy, S, Luz, J.G.
Deposit date:2015-05-29
Release date:2016-04-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Discovery and Characterization of 2-Acylaminoimidazole Microsomal Prostaglandin E Synthase-1 Inhibitors.
J.Med.Chem., 59, 2016
1TXR
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X-ray crystal structure of bestatin bound to AAP
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Bacterial leucyl aminopeptidase, ZINC ION
Authors:Stamper, C.C, Holz, R.C, Ringe, D, Petsko, G.A.
Deposit date:2004-07-06
Release date:2004-07-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spectroscopic and X-ray Crystallographic Characterization of Bestatin Bound to the Aminopeptidase from Aeromonas (Vibrio) proteolytica.
Biochemistry, 43, 2004
5X9G
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BU of 5x9g by Molmil
Crystal structure of the cytosolic domain of the Mg2+ channel MgtE in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Magnesium transporter MgtE
Authors:Tomita, A, Hattori, M, Nureki, O.
Deposit date:2017-03-07
Release date:2017-08-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:ATP-dependent modulation of MgtE in Mg(2+) homeostasis
Nat Commun, 8, 2017

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