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PDB: 88675 results

8CRJ
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BU of 8crj by Molmil
Crystal structure of LplA1 in complex with lipoyl-AMP (Listeria monocytogenes)
Descriptor: 1,2-ETHANEDIOL, 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, GLYCEROL, ...
Authors:Dienemann, J.-N, Chen, S.-Y, Hitzenberger, M, Sievert, M.L, Hacker, S.M, Prigge, S.T, Zacharias, M, Groll, M, Sieber, S.A.
Deposit date:2023-03-08
Release date:2023-06-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites.
Angew.Chem.Int.Ed.Engl., 62, 2023
7N87
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BU of 7n87 by Molmil
Solution NMR structure of peptidase domain from Clostridium thermocellum PCAT1
Descriptor: ABC-type bacteriocin transporter
Authors:Bhattacharya, S, Palillo, A.
Deposit date:2021-06-13
Release date:2021-12-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and dynamic studies of the peptidase domain from Clostridium thermocellum PCAT1.
Protein Sci., 31, 2022
6EUJ
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BU of 6euj by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
Descriptor: Beta-glucanase
Authors:Cartmell, A, Gilbert, H.J.
Deposit date:2017-10-30
Release date:2018-10-17
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
5MNH
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BU of 5mnh by Molmil
Cationic trypsin in complex with benzamidine (deuterated sample at 295 K)
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
5MNO
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BU of 5mno by Molmil
Cationic trypsin in complex with N-amidinopiperidine (deuterated sample at 295 K)
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
8CRI
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BU of 8cri by Molmil
Crystal structure of LplA1 in complex with lipoic acid (Listeria monocytogenes)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, LIPOIC ACID, ...
Authors:Dienemann, J.-N, Chen, S.-Y, Hitzenberger, M, Sievert, M.L, Hacker, S.M, Prigge, S.T, Zacharias, M, Groll, M, Sieber, S.A.
Deposit date:2023-03-08
Release date:2023-06-07
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Chemical Proteomic Strategy Reveals Inhibitors of Lipoate Salvage in Bacteria and Parasites.
Angew.Chem.Int.Ed.Engl., 62, 2023
5MOQ
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BU of 5moq by Molmil
Joint X-ray/neutron structure of cationic trypsin in complex with benzamidine
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
Deposit date:2016-12-14
Release date:2018-02-28
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (0.93 Å), X-RAY DIFFRACTION
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
6RU2
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BU of 6ru2 by Molmil
Crystal Structure of Glucuronoyl Esterase from Cerrena unicolor
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-methyl-glucuronoyl methylesterase, ...
Authors:Ernst, H.A, Mosbech, C, Langkilde, A, Westh, P, Meyer, A, Agger, J.W, Larsen, S.
Deposit date:2019-05-27
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The structural basis of fungal glucuronoyl esterase activity on natural substrates.
Nat Commun, 11, 2020
5MPM
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SERCA2a from pig heart
Descriptor: (6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Drachmann, N.D, Sitsel, A, Andersen, J.L, Nissen, P, Olesen, C.
Deposit date:2016-12-16
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the heart specific SERCA2a Ca2+-ATPase.
Embo J., 38, 2019
6F7L
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BU of 6f7l by Molmil
Crystal structure of LkcE R326Q mutant in complex with its substrate
Descriptor: ACETATE ION, Amine oxidase LkcE, CALCIUM ION, ...
Authors:Dorival, J, Risser, F, Jacob, C, Collin, S, Drager, G, Kirschning, A, Paris, C, Chagot, B, Gruez, A, Weissman, K.J.
Deposit date:2017-12-11
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights into a dual function amide oxidase/macrocyclase from lankacidin biosynthesis.
Nat Commun, 9, 2018
6P6U
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BU of 6p6u by Molmil
Crystal Structure of Monoclinic Rabbit Muscle Lactate Dehydrogenase with Four Tetramers as the Asymmetric Unit
Descriptor: ADENOSINE MONOPHOSPHATE, L-lactate dehydrogenase A chain
Authors:McPherson, A.
Deposit date:2019-06-04
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Crystal Structure of Monoclinic Rabbit Muscle Lactate Dehydrogenase with Four Tetramers as the Asymmetric Unit
to be published
6F1C
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BU of 6f1c by Molmil
C1rC1s complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Complement C1r subcomponent, ...
Authors:Almitairi, J.O.M, Venkatraman Girija, U, Furze, C.M, Simpson-Gray, X, Badakshi, F, Marshall, J.E, Mitchell, D.A, Moody, P.C.E, Wallis, R.
Deposit date:2017-11-21
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of the C1r-C1s interaction of the C1 complex of complement activation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5JQS
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BU of 5jqs by Molmil
Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin
Descriptor: 1,4-DIETHYLENE DIOXIDE, CHLORIDE ION, Protein FAM63A, ...
Authors:Abdul Rehman, S.A, Kulathu, Y.
Deposit date:2016-05-05
Release date:2016-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:MINDY-1 Is a Member of an Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes.
Mol.Cell, 63, 2016
5JQY
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BU of 5jqy by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, N-oxalylglycine and factor X substrate peptide fragment(39mer-4Ser)
Descriptor: ACETATE ION, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
Authors:McDonough, M.A, Pfeffer, I.
Deposit date:2016-05-05
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern.
Nat Commun, 10, 2019
6MZV
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BU of 6mzv by Molmil
Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, widened inner ring
Descriptor: Microcompartments protein
Authors:Greber, B.J, Sutter, M, Kerfeld, C.A.
Deposit date:2018-11-05
Release date:2019-03-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly.
Structure, 27, 2019
6FAD
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BU of 6fad by Molmil
SR protein kinase 1 (SRPK1) in complex with the RGG-box of HSV1 ICP27
Descriptor: PHOSPHATE ION, SRSF protein kinase 1, mRNA export factor
Authors:Tunnicliffe, R.B, Levy, C, Mould, A.P, Mckenzie, E.A, Sandri-Goldin, R.M, Golovanov, A.P.
Deposit date:2017-12-15
Release date:2019-09-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Molecular Mechanism of SR Protein Kinase 1 Inhibition by the Herpes Virus Protein ICP27.
Mbio, 10, 2019
6USQ
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BU of 6usq by Molmil
Telomerase Reverse Transcriptase binary complex with Y256A mutation, TERT:DNA
Descriptor: DNA (5'-D(*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*GP*GP*TP*CP*A)-3'), DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)-D(P*CP*T)-R(P*GP*AP*C)-D(P*C)-3'), MAGNESIUM ION, ...
Authors:Schaich, M.A, Freudenthal, B.D, Khoang, T.H.
Deposit date:2019-10-28
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.62 Å)
Cite:Mechanisms of nucleotide selection by telomerase.
Elife, 9, 2020
5JRA
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BU of 5jra by Molmil
Nitric oxide complex of the L16V mutant of cytochrome c prime from Alcaligenes xylosoxidans
Descriptor: ASCORBIC ACID, Cytochrome c', HEME C, ...
Authors:Kekilli, D, Strange, R.W, Hough, M.A.
Deposit date:2016-05-06
Release date:2017-03-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Engineering proximal vs. distal heme-NO coordination via dinitrosyl dynamics: implications for NO sensor design.
Chem Sci, 8, 2017
5JSK
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BU of 5jsk by Molmil
The 3D structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough in the reduced state at 0.95 Angstrom resolution
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, GLYCEROL, ...
Authors:Marques, M.C, Pereira, I.A.C, Matias, P.M.
Deposit date:2016-05-08
Release date:2017-03-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.
Nat. Chem. Biol., 13, 2017
6FIJ
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BU of 6fij by Molmil
Structure of the loading/condensing region (SAT-KS-MAT) of the cercosporin fungal non-reducing polyketide synthase (NR-PKS) CTB1
Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCEROL, ...
Authors:Herbst, D.A, Jakob, R.P, Townsend, C.A, Maier, T.
Deposit date:2018-01-18
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:The structural organization of substrate loading in iterative polyketide synthases.
Nat. Chem. Biol., 14, 2018
6MWB
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BU of 6mwb by Molmil
NavAb Voltage-gated Sodium Channel, residues 1-239 with mutation T206A
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Ion transport protein, ...
Authors:Lenaeus, M.J, Catterall, W.A.
Deposit date:2018-10-29
Release date:2018-12-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular dissection of multiphase inactivation of the bacterial sodium channel NaVAb.
J. Gen. Physiol., 151, 2019
6RYJ
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BU of 6ryj by Molmil
structure of conglutinin carbohydrate recognition domain with ethylene glycol bound
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Conglutinin
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2019-06-10
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine.
J.Biol.Chem., 294, 2019
6MGG
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BU of 6mgg by Molmil
Succinyl-CoA synthase from Francisella tularensis, phosphorylated, in complex with CoA
Descriptor: 1,2-ETHANEDIOL, COENZYME A, MAGNESIUM ION, ...
Authors:Osipiuk, J, Maltseva, N, Jedrzejczak, R, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-09-13
Release date:2018-09-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Succinyl-CoA synthase from Francisella tularensis
to be published
6FK3
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BU of 6fk3 by Molmil
Structure and function of aldehyde dehydrogenase from Thermus thermophilus: An enzyme with an evolutionarily-distinct C-terminal arm (Recombinant full-length protein in complex with propanal)
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, Aldehyde dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Hayes, K.A, Noor, M.R, Djeghader, A, Soulimane, T.
Deposit date:2018-01-23
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The quaternary structure of Thermus thermophilus aldehyde dehydrogenase is stabilized by an evolutionary distinct C-terminal arm extension.
Sci Rep, 8, 2018
5MLY
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BU of 5mly by Molmil
Closed loop conformation of PhaZ7 Y105E mutant
Descriptor: PHB depolymerase PhaZ7
Authors:Kellici, T, Mavromoustakos, T, Jendrossek, D, Papageorgiou, A.C.
Deposit date:2016-12-08
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Crystal structure analysis, covalent docking, and molecular dynamics calculations reveal a conformational switch in PhaZ7 PHB depolymerase.
Proteins, 85, 2017

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