Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89472 results

8A6E
DownloadVisualize
BU of 8a6e by Molmil
100 picosecond light activated crystal structure of bovine rhodopsin in Lipidic Cubic Phase (SACLA)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gruhl, T, Weinert, T, Rodrigues, M.J, Milne, C.J, Ortolani, G, Nass, K, Nango, E, Sen, S, Johnson, P.J.M, Cirelli, C, Furrer, A, Mous, S, Skopintsev, P, James, D, Dworkowski, F, Baath, P, Kekilli, D, Oserov, D, Tanaka, R, Glover, H, Bacellar, C, Bruenle, S, Casadei, C.M, Diethelm, A.D, Gashi, D, Gotthard, G, Guixa-Gonzalez, R, Joti, Y, Kabanova, V, Knopp, G, Lesca, E, Ma, P, Martiel, I, Muehle, J, Owada, S, Pamula, F, Sarabi, D, Tejero, O, Tsai, C.J, Varma, N, Wach, A, Boutet, S, Tono, K, Nogly, P, Deupi, X, Iwata, S, Neutze, R, Standfuss, J, Schertler, G.F.X, Panneels, V.
Deposit date:2022-06-17
Release date:2023-03-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ultrafast structural changes direct the first molecular events of vision.
Nature, 615, 2023
6U1L
DownloadVisualize
BU of 6u1l by Molmil
Structure of two-domain translational regulator Yih1 reveals a possible mechanism of action
Descriptor: Protein IMPACT homolog
Authors:Harjes, E, Jameson, G.B, Edwards, P.J.B, Goroncy, A.K, Loo, T, Norris, G.E.
Deposit date:2019-08-16
Release date:2021-02-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Experimentally based structural model of Yih1 provides insight into its function in controlling the key translational regulator Gcn2.
Febs Lett., 595, 2021
7S67
DownloadVisualize
BU of 7s67 by Molmil
Extended conformation of daytime state KaiC
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein kinase KaiC, ...
Authors:Sandate, C.R, Swan, J.A, Partch, C.L, Lander, G.C.
Deposit date:2021-09-13
Release date:2021-09-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Coupling of distant ATPase domains in the circadian clock protein KaiC.
Nat.Struct.Mol.Biol., 29, 2022
6U1O
DownloadVisualize
BU of 6u1o by Molmil
Structure of two-domain translational regulator Yih1 reveals a possible mechanism of action
Descriptor: Protein IMPACT homolog
Authors:Harjes, E, Jameson, G.B, Edwards, P.J.B, Goroncy, A.K, Loo, T, Norris, G.E.
Deposit date:2019-08-16
Release date:2021-02-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Experimentally based structural model of Yih1 provides insight into its function in controlling the key translational regulator Gcn2.
Febs Lett., 595, 2021
6Y8B
DownloadVisualize
BU of 6y8b by Molmil
14-3-3 Sigma in complex with phosphorylated caspase{pS139} peptide
Descriptor: 14-3-3 protein sigma, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-03-04
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:A new soaking procedure for X-ray crystallographic structural determination of protein-peptide complexes.
Acta Crystallogr.,Sect.F, 76, 2020
5IEG
DownloadVisualize
BU of 5ieg by Molmil
Murine endoplasmic reticulum alpha-glucosidase II with N-9'-methoxynonyl-1-deoxynojirimycin.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Caputo, A.T, Roversi, P, Alonzi, D.S, Kiappes, J.L, Zitzmann, N.
Deposit date:2016-02-25
Release date:2016-07-27
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.822 Å)
Cite:Structures of mammalian ER alpha-glucosidase II capture the binding modes of broad-spectrum iminosugar antivirals.
Proc.Natl.Acad.Sci.USA, 113, 2016
5M3J
DownloadVisualize
BU of 5m3j by Molmil
Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD
Descriptor: DNA-directed RNA polymerase subunit, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Lukarska, M, Pflug, A, Cusack, S.
Deposit date:2016-10-14
Release date:2016-12-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis of an essential interaction between influenza polymerase and Pol II CTD.
Nature, 541, 2017
6PEG
DownloadVisualize
BU of 6peg by Molmil
MIF with a allosteric inhibitor
Descriptor: 4-amino-5-hydroxy-6-[(E)-(3-{[3-(2-methylpropanoyl)pyrazolo[1,5-a]pyridin-2-yl]methyl}phenyl)diazenyl]naphthalene-1,3-disulfonic acid, ACETATE ION, GLYCEROL, ...
Authors:Asojo, O.A.
Deposit date:2019-06-20
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibition of Macrophage Migration Inhibitory Factor by a Chimera of Two Allosteric Binders.
Acs Med.Chem.Lett., 11, 2020
5IMD
DownloadVisualize
BU of 5imd by Molmil
Xanthomonas campestris Peroxiredoxin Q - Structure F4
Descriptor: Bacterioferritin comigratory protein, FORMIC ACID, OXYGEN ATOM, ...
Authors:Perkins, A, Parsonage, D, Nelson, K.J, Poole, L.B, Karplus, A.
Deposit date:2016-03-06
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Peroxiredoxin Catalysis at Atomic Resolution.
Structure, 24, 2016
4DYL
DownloadVisualize
BU of 4dyl by Molmil
F-BAR domain of human FES tyrosine kinase
Descriptor: Tyrosine-protein kinase Fes/Fps
Authors:Ugochukwu, E, Salah, E, Elkins, J, Barr, A, Krojer, T, Filippakopoulos, P, Weigelt, J, Arrowsmith, C.H, Edwards, A, Bountra, C, von Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2012-02-29
Release date:2012-04-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:F-BAR domain of human FES tyrosine kinase
TO BE PUBLISHED
4E0A
DownloadVisualize
BU of 4e0a by Molmil
Crystal Structure of the mutant F44R BH1408 protein from Bacillus halodurans, Northeast Structural Genomics Consortium (NESG) Target BhR182
Descriptor: ACETIC ACID, BH1408 protein, GLYCEROL, ...
Authors:Kuzin, A, Neely, H, Seetharaman, J, Patel, P, Xiao, R, Ciccosanti, C, Wang, H, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-03-02
Release date:2012-05-02
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Northeast Structural Genomics Consortium Target BhR182
To be Published
8EW7
DownloadVisualize
BU of 8ew7 by Molmil
Human Serum Albumin with Cobalt (II) and Myristic Acid - crystal 2
Descriptor: COBALT (II) ION, MYRISTIC ACID, Serum albumin
Authors:Gucwa, M, Cooper, D.R, Stewart, A.J, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-10-21
Release date:2022-11-09
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and biochemical characterisation of Co2+-binding sites on serum albumins and their interplay with fatty acids
Chem Sci, 14, 2023
8F09
DownloadVisualize
BU of 8f09 by Molmil
Crystal structure of a trimethoprim-resistant dihydrofolate reductase (DHFR) enzyme from an uncultured soil bacterium
Descriptor: Dihydrofolate reductase, SULFATE ION
Authors:Stogios, P.J, Evdokimova, D, Borek, D, Di Leo, R, Semper, C, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-11-02
Release date:2022-11-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of a trimethoprim-resistant dihydrofolate reductase (DHFR) enzyme from an uncultured soil bacterium
To Be Published
5INZ
DownloadVisualize
BU of 5inz by Molmil
Racemic structure of baboon theta defensin-2
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Theta defensin-2, ...
Authors:Wang, C.K, King, G.J, Conibear, A.C, Ramos, M.C, Craik, D.J.
Deposit date:2016-03-08
Release date:2016-04-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.447 Å)
Cite:Mirror Images of Antimicrobial Peptides Provide Reflections on Their Functions and Amyloidogenic Properties.
J.Am.Chem.Soc., 138, 2016
6D25
DownloadVisualize
BU of 6d25 by Molmil
Crystal structure of the GH51 arabinofuranosidase from Xanthomonas axonopodis pv. citri
Descriptor: Alpha-L-arabinosidase, GLYCEROL
Authors:Santos, C.R, Morais, M.A.B, Tonoli, C.C.C, Giuseppe, P.O, Murakami, M.T.
Deposit date:2018-04-13
Release date:2019-02-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.
Biotechnol Biofuels, 11, 2018
6VTH
DownloadVisualize
BU of 6vth by Molmil
p53-specific T cell receptor
Descriptor: SULFATE ION, T-cell Receptor 12-6, Alfa chain, ...
Authors:Wu, D, Gallagher, D.T, Gowthaman, R, Pierce, B.G, Mariuzza, R.A.
Deposit date:2020-02-12
Release date:2020-06-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun, 11, 2020
7JFQ
DownloadVisualize
BU of 7jfq by Molmil
The crystal structure of 3CL MainPro of SARS-CoV-2 with de-oxidized C145
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, FORMIC ACID
Authors:Tan, K, Maltseva, N.I, Welk, L.F, Jedrzejczak, R.P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-07-17
Release date:2020-07-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The crystal structure of 3CL MainPro of SARS-CoV-2 with de-oxidized C145
To Be Published
7ACW
DownloadVisualize
BU of 7acw by Molmil
LID/HID (LMW SLP and HMW SLP interacting domains) from C. difficile (R7404 strain)
Descriptor: S-layer protein
Authors:Barwinska-Sendra, A, Lanzoni-Mangutchi, P, Basle, A, Salgado, P.S.
Deposit date:2020-09-11
Release date:2022-03-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
7ACZ
DownloadVisualize
BU of 7acz by Molmil
RdeltaD2 H/L (LMW SLP/HMW SLP) complex from C. difficile SlpA (R20291 strain)
Descriptor: SLPH (HMW SLP), SLPL deltaD2 (LMW SLP D2 truncation),SLPL deltaD2 (LMW SLP D2 truncation)
Authors:Lanzoni-Mangutchi, P, Barwinska-Sendra, A, Salgado, P.S.
Deposit date:2020-09-11
Release date:2022-03-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
7JGN
DownloadVisualize
BU of 7jgn by Molmil
Crystal Structure of the Zn-bound Human Heavy-chain variant 122H-delta C-star with meta-benzenedihyrdoxamate collected at 100K
Descriptor: Ferritin heavy chain, N~1~,N~3~-dihydroxybenzene-1,3-dicarboxamide, SODIUM ION, ...
Authors:Bailey, J.B, Tezcan, F.A.
Deposit date:2020-07-19
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks.
J.Am.Chem.Soc., 142, 2020
8BJE
DownloadVisualize
BU of 8bje by Molmil
A structure of the truncated LpMIP with bound inhibitor JK236.
Descriptor: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-[(1~{S})-1-pyridin-2-ylethyl]-3,10-diazabicyclo[4.3.1]decan-2-one, GLYCEROL, Peptidyl-prolyl cis-trans isomerase
Authors:Whittaker, J.J, Guskov, A, Goretzki, B, Hellmich, U.A.
Deposit date:2022-11-04
Release date:2023-09-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Legionella pneumophila macrophage infectivity potentiator protein appendage domains modulate protein dynamics and inhibitor binding.
Int.J.Biol.Macromol., 252, 2023
7ACY
DownloadVisualize
BU of 7acy by Molmil
H/L (SLPH/SLPL) complex from C. difficile (CD630 strain)
Descriptor: S-layer protein, SULFATE ION
Authors:Lanzoni-Mangutchi, P, Barwinska-Sendra, A, Salgado, P.S.
Deposit date:2020-09-11
Release date:2022-03-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
5IQZ
DownloadVisualize
BU of 5iqz by Molmil
Crystal structure of N-terminal domain of Human SIRT7
Descriptor: SIRT7 protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Thakur, K.G, Priyanka, A.
Deposit date:2016-03-11
Release date:2016-07-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture
Proteins, 84, 2016
7ACV
DownloadVisualize
BU of 7acv by Molmil
SLPL/HID (LMW SLP complex with HMW SLP interacting domain - HID) from C. difficile (R7404 strain)
Descriptor: HID - interacting domain of SLP HMW, LMW SLP
Authors:Barwinska-Sendra, A, Lanzoni-Mangutchi, P, Salgado, P.S.
Deposit date:2020-09-11
Release date:2022-03-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
6PIX
DownloadVisualize
BU of 6pix by Molmil
Crystal structure of HCV NS3/4A D168A protease in complex with P4-P5-5 (WK-25)
Descriptor: 1,2-ETHANEDIOL, NS3/4A protease, SULFATE ION, ...
Authors:Zephyr, J, Schiffer, C.A.
Deposit date:2019-06-27
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Avoiding Drug Resistance by Substrate Envelope-Guided Design: Toward Potent and Robust HCV NS3/4A Protease Inhibitors.
Mbio, 11, 2020

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon