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PDB: 89346 results

7SSW
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BU of 7ssw by Molmil
Late translocation intermediate with EF-G dissociated (Structure VI)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
6NWL
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BU of 6nwl by Molmil
Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with hydrocortisone and PGC1a coregulator fragment
Descriptor: (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Liu, X, Ortlund, E.A.
Deposit date:2019-02-06
Release date:2019-10-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.595 Å)
Cite:First High-Resolution Crystal Structures of the Glucocorticoid Receptor Ligand-Binding Domain-Peroxisome Proliferator-ActivatedgammaCoactivator 1-alphaComplex with Endogenous and Synthetic Glucocorticoids.
Mol.Pharmacol., 96, 2019
6T97
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BU of 6t97 by Molmil
Trypanothione Reductase from Leismania infantum in complex with TRL190
Descriptor: 4-[1-[4-[4-(2-phenylethyl)-1,3-thiazol-2-yl]-3-(2-piperidin-4-ylethoxy)phenyl]-1,2,3-triazol-4-yl]butan-1-amine, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Carriles, A, Hermoso, J.A.
Deposit date:2019-10-26
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Scaffold hopping identifies new triazole-and triazolium-based inhibitors of Leishmania infantum Trypanothione Reductase with potent and selective antileishmanial activity
To Be Published
7SSN
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BU of 7ssn by Molmil
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
8PAZ
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BU of 8paz by Molmil
OXIDIZED NATIVE PSEUDOAZURIN FROM A. FAECALIS
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Adman, E.T, Libeu, C.A.P.
Deposit date:1997-02-24
Release date:1997-08-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Site-directed mutants of pseudoazurin: explanation of increased redox potentials from X-ray structures and from calculation of redox potential differences.
Biochemistry, 36, 1997
7SS9
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BU of 7ss9 by Molmil
Late translocation intermediate with EF-G partially dissociated (Structure V)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Loveland, A.B, Gamper, H.B, Hou, Y, Korostelev, A.A.
Deposit date:2021-11-10
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7GGM
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BU of 7ggm by Molmil
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with MAT-POS-afd4d4fd-2 (Mpro-x12677)
Descriptor: 2-(6-chloropyridin-2-yl)-N-(isoquinolin-4-yl)acetamide, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Aimon, A, Aschenbrenner, J.C, Balcomb, B.H, Bertram, F.K.R, Brandao-Neto, J, Dias, A, Douangamath, A, Dunnett, L, Godoy, A.S, Gorrie-Stone, T.J, Koekemoer, L, Krojer, T, Lithgo, R.M, Lukacik, P, Marples, P.G, Mikolajek, H, Nelson, E, Owen, C.D, Powell, A.J, Rangel, V.L, Skyner, R, Strain-Damerell, C.M, Thompson, W, Tomlinson, C.W.E, Wild, C, Walsh, M.A, von Delft, F.
Deposit date:2023-08-11
Release date:2023-11-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.839 Å)
Cite:Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
Science, 382, 2023
6QKY
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BU of 6qky by Molmil
Tryptophan synthase subunit alpha from Streptococcus pneumoniae with 3D domain swap in the core of TIM barrel
Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Michalska, K, Kowiel, M, Bigelow, L, Endres, M, Gilski, M, Jaskolski, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-01-30
Release date:2019-03-27
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:3D domain swapping in the TIM barrel of the alpha subunit of Streptococcus pneumoniae tryptophan synthase.
Acta Crystallogr D Struct Biol, 76, 2020
7ST7
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BU of 7st7 by Molmil
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-12
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7ST6
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BU of 7st6 by Molmil
Pre translocation, non-rotated 70S ribosome (Structure I)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-12
Release date:2022-02-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
8SYJ
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BU of 8syj by Molmil
Structure of apurinic/apyrimidinic DNA lyase TK0353 from Thermococcus kodakarensis (Iodide crystal form)
Descriptor: GLYCEROL, IODIDE ION, SULFATE ION, ...
Authors:Eckenroth, B.E, Gardner, A.F, Doublie, S.
Deposit date:2023-05-25
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.
J.Biol.Chem., 300, 2023
8FBH
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BU of 8fbh by Molmil
Crystal structure of NSD1 Mutant-T1927A
Descriptor: Histone-lysine N-methyltransferase, H3 lysine-36 specific, S-ADENOSYLMETHIONINE, ...
Authors:Providokhina, K, Dong, A, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2022-11-29
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of NSD1
To Be Published
5NAO
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BU of 5nao by Molmil
NMR structure of TLR4 transmembrane domain (624-657) in DPC micelles
Descriptor: Toll-like receptor 4
Authors:Mineev, K.S, Goncharuk, S.A, Goncharuk, M.V, Arseniev, A.S.
Deposit date:2017-02-28
Release date:2018-03-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.
Sci Rep, 7, 2017
7SSL
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BU of 7ssl by Molmil
Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
7BBL
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BU of 7bbl by Molmil
Structure of human Gemin6/Gemin7/Gemin8 trimeric complex
Descriptor: Gem-associated protein 6, Gem-associated protein 7, Gem-associated protein 8
Authors:Viswanathan, A, Grimm, C, Fischer, U.
Deposit date:2020-12-17
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.521 Å)
Cite:Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.
Nucleic Acids Res., 49, 2021
6XHB
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BU of 6xhb by Molmil
Crystal Structure of wild-type KRAS (GMPPNP-bound) in complex with RAS-binding domain (RBD) and cysteine-rich domain (CRD) of RAF1/CRAF (crystal form II)
Descriptor: CHLORIDE ION, GLYCEROL, GTPase KRas, ...
Authors:Tran, T.H, Chan, A.H, Dharmaiah, S, Simanshu, D.K.
Deposit date:2020-06-18
Release date:2021-01-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:KRAS interaction with RAF1 RAS-binding domain and cysteine-rich domain provides insights into RAS-mediated RAF activation.
Nat Commun, 12, 2021
7ST2
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BU of 7st2 by Molmil
Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2021-11-11
Release date:2022-02-23
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
6QEQ
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BU of 6qeq by Molmil
PcfF from Enterococcus faecalis pCF10
Descriptor: PcfF
Authors:Rehman, S, Berntsson, R.P.A.
Deposit date:2019-01-08
Release date:2019-05-01
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enterococcal PcfF Is a Ribbon-Helix-Helix Protein That Recruits the Relaxase PcfG Through Binding and Bending of the oriT Sequence.
Front Microbiol, 10, 2019
6X4W
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BU of 6x4w by Molmil
Mfd-bound E.coli RNA polymerase elongation complex - III state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (64-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Llewellyn, E, Chen, J, Kang, J.Y, Darst, S.A.
Deposit date:2020-05-24
Release date:2021-02-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for transcription complex disruption by the Mfd translocase.
Elife, 10, 2021
7BQV
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BU of 7bqv by Molmil
Cereblon in complex with SALL4 and (S)-5-hydroxythalidomide
Descriptor: 2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-5-oxidanyl-isoindole-1,3-dione, Protein cereblon, SULFATE ION, ...
Authors:Furihata, H, Miyauchi, Y, Asano, A, Tanokura, M, Miyakawa, T.
Deposit date:2020-03-25
Release date:2020-08-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural bases of IMiD selectivity that emerges by 5-hydroxythalidomide.
Nat Commun, 11, 2020
7ZK9
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BU of 7zk9 by Molmil
ABCB1 L971C mutant (mABCB1) in the inward facing state
Descriptor: (4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione, ATP-dependent translocase ABCB1
Authors:Parey, K, Januliene, D, Gewering, T, Zhang, Q, Moeller, A.
Deposit date:2022-04-12
Release date:2023-04-26
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Tracing the substrate translocation mechanism in P-glycoprotein.
Elife, 12, 2024
4ZBV
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BU of 4zbv by Molmil
Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with benzyl T-antigen
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chandran, T, Sharma, A, Vijayan, M.
Deposit date:2015-04-15
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural studies on a non-toxic homologue of type II RIPs from bitter gourd: Molecular basis of non-toxicity, conformational selection and glycan structure.
J.Biosci., 40, 2015
4S1N
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BU of 4s1n by Molmil
The crystal structure of phosphoribosylglycinamide formyltransferase from Streptococcus pneumoniae TIGR4
Descriptor: CHLORIDE ION, Phosphoribosylglycinamide formyltransferase
Authors:Tan, K, Zhou, M, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-01-14
Release date:2015-01-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The crystal structure of phosphoribosylglycinamide formyltransferase from Streptococcus pneumoniae TIGR4
To be Published
8PKY
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BU of 8pky by Molmil
Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148V variant
Descriptor: FLAVIN MONONUCLEOTIDE, histidine kinase
Authors:Nikolaev, A, Remeeva, A, Gushchin, I.
Deposit date:2023-06-27
Release date:2023-07-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Two distinct mechanisms of flavoprotein spectral tuning revealed by low-temperature and time-dependent spectroscopy.
Protein Sci., 33, 2024
7ZQZ
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BU of 7zqz by Molmil
F61V Cytochrome c prime beta from Methylococcus capsulatus (Bath): NO complex
Descriptor: Cytochrome c, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Adams, H.R, Hough, M.A.
Deposit date:2022-05-03
Release date:2023-05-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:A heme pocket aromatic quadrupole modulates gas binding to cytochrome c'-beta : Implications for NO sensors.
J.Biol.Chem., 299, 2023

225946

数据于2024-10-09公开中

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