Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89346 results

6PD0
DownloadVisualize
BU of 6pd0 by Molmil
Crystal structure of the bacterial cellulose synthase subunit G (BcsG) from Escherichia coli, catalytic domain
Descriptor: Cellulose biosynthesis protein BcsG, MAGNESIUM ION, ZINC ION
Authors:Anderson, A.C, Brenner, T, Weadge, J.T.
Deposit date:2019-06-18
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:TheEscherichia colicellulose synthase subunit G (BcsG) is a Zn2+-dependent phosphoethanolamine transferase.
J.Biol.Chem., 295, 2020
6Y1G
DownloadVisualize
BU of 6y1g by Molmil
Photoconverted HcRed in its optoacoustic state
Descriptor: 1,2-ETHANEDIOL, GFP-like non-fluorescent chromoprotein
Authors:Janowski, R, Fuenzalida-Werner, J.P, Mishra, K, Stiel, A.C, Niessing, D.
Deposit date:2020-02-12
Release date:2020-07-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Challenging a Preconception: Optoacoustic Spectrum Differs from the Optical Absorption Spectrum of Proteins and Dyes for Molecular Imaging.
Anal.Chem., 92, 2020
7PF1
DownloadVisualize
BU of 7pf1 by Molmil
UVC treated Human apoferritin
Descriptor: CHLORIDE ION, Ferritin heavy chain, N-terminally processed, ...
Authors:Renault, L, Depelteau, J.S, Briegel, A.
Deposit date:2021-08-11
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:UVC inactivation of pathogenic samples suitable for cryo-EM analysis.
Commun Biol, 5, 2022
6VGC
DownloadVisualize
BU of 6vgc by Molmil
Crystal Structures of FLAP bound to DG-031
Descriptor: (2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid, 5-lipoxygenase-activating protein, CALCIUM ION, ...
Authors:Ho, J.D, Lee, M.R, Rauch, C.T, Aznavour, K, Park, J.S, Luz, J.G, Antonysamy, S, Condon, B, Maletic, M, Zhang, A, Hickey, M.J, Hughes, N.E, Chandrasekhar, S, Sloan, A.V, Gooding, K, Harvey, A, Yu, X.P, Kahl, S.D, Norman, B.H.
Deposit date:2020-01-07
Release date:2020-12-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure-based, multi-targeted drug discovery approach to eicosanoid inhibition: Dual inhibitors of mPGES-1 and 5-lipoxygenase activating protein (FLAP).
Biochim Biophys Acta Gen Subj, 1865, 2020
8VV3
DownloadVisualize
BU of 8vv3 by Molmil
Structure of the insect gustatory receptor Gr9 from Bombyx mori in complex with L-sorbose
Descriptor: Gustatory receptor, alpha-L-sorbopyranose
Authors:Gomes, J.V, Butterwick, J.A.
Deposit date:2024-01-30
Release date:2024-03-20
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:The molecular basis of sugar detection by an insect taste receptor.
Nature, 629, 2024
5MEH
DownloadVisualize
BU of 5meh by Molmil
Crystal structure of alpha-1,2-mannosidase from Caulobacter K31 strain in complex with 1-deoxymannojirimycin
Descriptor: 1-DEOXYMANNOJIRIMYCIN, ACETATE ION, CALCIUM ION, ...
Authors:Males, A, Davies, G.J.
Deposit date:2016-11-14
Release date:2016-12-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Conformational Behaviour of Azasugars Based on Mannuronic Acid.
Chembiochem, 18, 2017
8VXA
DownloadVisualize
BU of 8vxa by Molmil
Structure of HamB-DNA complex, conformation 1, from the Escherichia coli Hachiman defense system
Descriptor: DNA (40-MER), HamB
Authors:Tuck, O.T, Doudna, J.A.
Deposit date:2024-02-03
Release date:2024-03-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Hachiman is a genome integrity sensor.
Biorxiv, 2024
6Y2H
DownloadVisualize
BU of 6y2h by Molmil
The crystal structure of human chloride intracellular channel protein 5
Descriptor: Chloride intracellular channel protein 5, THIOCYANATE ION
Authors:Ferofontov, A, Giladi, M, Haitin, Y.
Deposit date:2020-02-16
Release date:2020-05-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.154 Å)
Cite:Conserved cysteine dioxidation enhances membrane interaction of human Cl - intracellular channel 5.
Faseb J., 34, 2020
8E7H
DownloadVisualize
BU of 8e7h by Molmil
Cryo-EM structure of cardiac amyloid fibril from a wild-type amyloidosis patient
Descriptor: Transthyretin
Authors:Nguyen, B.A, Saelices, L.
Deposit date:2022-08-23
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cardiac amyloid fibrils extracted from a wild-type ATTR amyloidosis patient
To Be Published
4QX5
DownloadVisualize
BU of 4qx5 by Molmil
Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: Insights for PKG agonist design
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Gerlits, O.O, Blakeley, M.P, Sankaran, B, Kovalevsky, A.Y, Kim, C.
Deposit date:2014-07-18
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design.
Biochemistry, 53, 2014
5MFH
DownloadVisualize
BU of 5mfh by Molmil
Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)5
Descriptor: (RR)5, CALCIUM ION, YIIIM5AII
Authors:Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A.
Deposit date:2016-11-18
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Curvature of designed armadillo repeat proteins allows modular peptide binding.
J. Struct. Biol., 201, 2018
8GAB
DownloadVisualize
BU of 8gab by Molmil
Crystal structure of CTLA-4 in complex with a high affinity CTLA-4 binder
Descriptor: CTLA-4 binder, Cytotoxic T-lymphocyte protein 4, POTASSIUM ION
Authors:Yang, W, Almo, S.C, Ghosh, A.
Deposit date:2023-02-22
Release date:2024-08-21
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Design of High Affinity Binders to Convex Protein Target Sites.
Biorxiv, 2024
6Y58
DownloadVisualize
BU of 6y58 by Molmil
Binary complex of 14-3-3 sigma (C38N) with the Estrogen Related Receptor gamma (LBD) phosphopeptide
Descriptor: 14-3-3 protein sigma, Estrogen Related Receptor gamma phosphopeptide, MAGNESIUM ION
Authors:Somsen, B.A, Sijbesma, E, Leijten-van de Gevel, I.A, Ottmann, C.
Deposit date:2020-02-25
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Fluorescence Anisotropy-Based Tethering for Discovery of Protein-Protein Interaction Stabilizers.
Acs Chem.Biol., 15, 2020
8GAD
DownloadVisualize
BU of 8gad by Molmil
Crystal structure of a high affinity PD-L1 binder
Descriptor: INDOLE, PD-L1 binder
Authors:Yang, W, Almo, S.C, Ghosh, A.
Deposit date:2023-02-22
Release date:2024-08-21
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Design of High Affinity Binders to Convex Protein Target Sites.
Biorxiv, 2024
6PJG
DownloadVisualize
BU of 6pjg by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR3-97
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,4S,5S)-4-hydroxy-5-{[N-(methoxycarbonyl)-L-alanyl]amino}-1,6-diphenylhexan-2-yl]carbamate, Protease NL4-3
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
8BDN
DownloadVisualize
BU of 8bdn by Molmil
VCB in complex with compound 23
Descriptor: (2~{R})-3-methyl-1-[(2~{S},4~{R})-2-[(5~{R})-5-methyl-5-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]-4~{H}-1,2,4-oxadiazol-3-yl]-4-oxidanyl-pyrrolidin-1-yl]-2-(3-methyl-1,2-oxazol-5-yl)butan-1-one, Elongin-B, Elongin-C, ...
Authors:Sorrell, F.J, Mueller, J.E, Lehmann, M, Wegener, A.
Deposit date:2022-10-19
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Systematic Potency and Property Assessment of VHL Ligands and Implications on PROTAC Design.
Chemmedchem, 18, 2023
8E7T
DownloadVisualize
BU of 8e7t by Molmil
Crystal structure of Middle East respiratory syndrome coronavirus (MERS-CoV) 3CL protease inactive mutant C148A
Descriptor: 3C-Like Protease, GLYCEROL, SODIUM ION
Authors:Shaqra, A.M, Zvornicanin, S.N, Schiffer, C.A.
Deposit date:2022-08-24
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Middle East respiratory syndrome coronavirus (MERS-CoV) 3CL protease inactive mutant C148A
To Be Published
8W3V
DownloadVisualize
BU of 8w3v by Molmil
Crystal structure of human WDR41
Descriptor: WD repeat-containing protein 41
Authors:Hutchinson, A, Dong, A, Li, Y, Seitova, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-02-22
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human WDR41
To be published
5MJH
DownloadVisualize
BU of 5mjh by Molmil
X-ray generated oxyferrous/water mixed complex of DtpA from Streptomyces lividans
Descriptor: Dye type peroxidase A, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Moreno Chicano, T, Chaplin, A.K, Worrall, J.A.R, Strange, R.W, Hough, M.A.
Deposit date:2016-12-01
Release date:2017-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Photoreduction and validation of haem-ligand intermediate states in protein crystals by in situ single-crystal spectroscopy and diffraction.
IUCrJ, 4, 2017
8E05
DownloadVisualize
BU of 8e05 by Molmil
Structure of dimeric LRRK1
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
Authors:Reimer, J.M, Lin, Y.X, Leschziner, A.E.
Deposit date:2022-08-08
Release date:2023-08-30
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
5MKK
DownloadVisualize
BU of 5mkk by Molmil
Crystal structure of the heterodimeric ABC transporter TmrAB, a homolog of the antigen translocation complex TAP
Descriptor: Multidrug resistance ABC transporter ATP-binding and permease protein, SULFATE ION
Authors:Noell, A, Thomas, C, Tomasiak, T.M, Olieric, V, Wang, M, Diederichs, K, Stroud, R.M, Pos, K.M, Tampe, R.
Deposit date:2016-12-05
Release date:2017-01-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and mechanistic basis of a functional homolog of the antigen transporter TAP.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8VSG
DownloadVisualize
BU of 8vsg by Molmil
SARS-CoV-2 main protease with covalent inhibitor
Descriptor: (1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide, 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Bell, J.A, Bandera, A.M.
Deposit date:2024-01-24
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.071 Å)
Cite:Exploiting high-energy hydration sites for the discovery of potent peptide aldehyde inhibitors of the SARS-CoV-2 main protease with cellular antiviral activity.
Bioorg.Med.Chem., 103, 2024
6FAI
DownloadVisualize
BU of 6fai by Molmil
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Descriptor: 20S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Scaiola, A, Pena, C, Weisser, M, Boehringer, D, Leibundgut, M, Klingauf-Nerurkar, P, Gerhardy, S, Panse, V.G, Ban, N.
Deposit date:2017-12-15
Release date:2018-02-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit.
EMBO J., 37, 2018
6PQQ
DownloadVisualize
BU of 6pqq by Molmil
Cryo-EM structure of human TRPA1 C621S mutant in the apo state
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Transient receptor potential cation channel subfamily A member 1, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Suo, Y, Wang, Z, Zubcevic, L, Hsu, A.L, He, Q, Borgnia, M.J, Ji, R.-R, Lee, S.-Y.
Deposit date:2019-07-09
Release date:2020-01-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Structural Insights into Electrophile Irritant Sensing by the Human TRPA1 Channel.
Neuron, 105, 2020
5M5M
DownloadVisualize
BU of 5m5m by Molmil
Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Kinesin-like protein cut7, ...
Authors:Goulet, A, Moores, C.A, Cross, R.A.
Deposit date:2016-10-21
Release date:2016-11-30
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (9.3 Å)
Cite:Schizosaccharomyces pombe kinesin-5 switches direction using a steric blocking mechanism.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon