Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 results

4RD6
DownloadVisualize
BU of 4rd6 by Molmil
Structure of aIF2-gamma from Sulfolobus solfataricus bound to GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Translation initiation factor 2 subunit gamma
Authors:Dubiez, E, Aleksandrov, A, Lazennec-Schurdevin, C, Mechulam, Y, Schmitt, E.
Deposit date:2014-09-18
Release date:2015-07-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.944 Å)
Cite:Identification of a second GTP-bound magnesium ion in archaeal initiation factor 2.
Nucleic Acids Res., 43, 2015
8AHU
DownloadVisualize
BU of 8ahu by Molmil
Crystal structure of D-amino acid aminotrensferase from Haliscomenobacter hydrossis complexed with D-cycloserine
Descriptor: Aminotransferase class IV, GLYCEROL, [5-hydroxy-6-methyl-4-({[(4E)-3-oxo-1,2-oxazolidin-4-ylidene]amino}methyl)pyridin-3-yl]methyl dihydrogen phosphate
Authors:Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Bakunova, A.K, Popov, V.O, Bezsudnova, E.Y.
Deposit date:2022-07-22
Release date:2022-08-31
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Mechanism of D-Cycloserine Inhibition of D-Amino Acid Transaminase from Haliscomenobacter hydrossis.
Biochemistry Mosc., 88, 2023
5JYB
DownloadVisualize
BU of 5jyb by Molmil
Crystal structure of 3 mutant of Ba3275 (S116A, E243A, H313A), the member of S66 family of serine peptidases
Descriptor: 1,2-ETHANEDIOL, 2-BUTANOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Nocek, B, Jedrzejczak, R, Joachimiak, A, CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-05-13
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.647 Å)
Cite:Crystal structure of 3 mutant of Ba3275 (S116A, E243A, H313A), the member of S66 family of serine peptidases
To Be Published
6HWI
DownloadVisualize
BU of 6hwi by Molmil
Immature M-PMV capsid hexamer structure in intact virus particles
Descriptor: Gag-Pro-Pol polyprotein
Authors:Qu, K, Glass, B, Dolezal, M, Schur, F.K.M, Rein, A, Rumlova, M, Ruml, T, Kraeusslich, H.G, Briggs, J.A.G.
Deposit date:2018-10-12
Release date:2018-12-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structure and architecture of immature and mature murine leukemia virus capsids.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8DLQ
DownloadVisualize
BU of 8dlq by Molmil
Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike glycoprotein
Authors:Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-07-08
Release date:2022-08-31
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization.
Nat Commun, 13, 2022
4XB5
DownloadVisualize
BU of 4xb5 by Molmil
Structure of orange carotenoid protein binding canthaxanthin
Descriptor: GLYCEROL, Orange carotenoid-binding protein, beta,beta-carotene-4,4'-dione
Authors:Kerfeld, C.A, Sutter, M, Leverenz, R.L.
Deposit date:2014-12-16
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:PHOTOSYNTHESIS. A 12 angstrom carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection.
Science, 348, 2015
8Q92
DownloadVisualize
BU of 8q92 by Molmil
P301S Tau Filaments from the Brains of PS19 Transgenic Mouse Line
Descriptor: Microtubule-associated protein tau
Authors:Schweighauser, M, Murzin, A.G, Macdonald, J, Lavenir, I, Crowther, R.A, Scheres, S.H.W, Goedert, M.
Deposit date:2023-08-19
Release date:2023-10-11
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Cryo-EM structures of tau filaments from the brains of mice transgenic for human mutant P301S Tau.
Acta Neuropathol Commun, 11, 2023
5G4M
DownloadVisualize
BU of 5g4m by Molmil
Crystal structure of the p53 cancer mutant Y220C in complex with a monofluorinated derivative of the small molecule stabilizer Phikan083
Descriptor: 1,2-ETHANEDIOL, 1-[9-(2-fluoroethyl)-9H-carbazol-3-yl]-N-methylmethanamine, CELLULAR TUMOR ANTIGEN P53, ...
Authors:Joerger, A.C, Bauer, M.
Deposit date:2016-05-13
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Harnessing Fluorine-Sulfur Contacts and Multipolar Interactions for the Design of P53 Mutant Y220C Rescue Drugs.
Acs Chem.Biol., 11, 2016
8Q96
DownloadVisualize
BU of 8q96 by Molmil
P301S Tau Filaments from the Brains of Tg2541 Transgenic Mouse Line
Descriptor: Isoform Tau-E of Microtubule-associated protein tau, Unknown protein
Authors:Schweighauser, M, Murzin, A.G, Macdonald, J, Lavenir, I, Crowther, R.A, Scheres, S.H.W, Goedert, M.
Deposit date:2023-08-19
Release date:2023-10-11
Last modified:2023-10-18
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Cryo-EM structures of tau filaments from the brains of mice transgenic for human mutant P301S Tau.
Acta Neuropathol Commun, 11, 2023
6HWW
DownloadVisualize
BU of 6hww by Molmil
Immature MLV capsid hexamer structure in intact virus particles
Descriptor: Putative gag polyprotein
Authors:Qu, K, Glass, B, Dolezal, M, Schur, F.K.M, Rein, A, Rumlova, M, Ruml, T, Kraeusslich, H.G, Briggs, J.A.G.
Deposit date:2018-10-15
Release date:2018-12-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structure and architecture of immature and mature murine leukemia virus capsids.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6X8H
DownloadVisualize
BU of 6x8h by Molmil
Caspase-8 in complex with AOMK inhibitor, Ac-DW3-KE, forms tetrahedral adduct
Descriptor: Ac-DW3-KE, Caspase-8
Authors:Solania, A, Xu, J.H, Wolan, D.W.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Caspase-8 in complex with AOMK inhibitor, Ac-DW3-KE, forms tetrahedral adduct
To Be Published
6EHH
DownloadVisualize
BU of 6ehh by Molmil
Crystal structure of mouse MTH1 mutant L116M with inhibitor TH588
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Gustafsson, R, Narwal, M, Jemth, A.-S, Almlof, I, Warpman Berglund, U, Helleday, T, Stenmark, P.
Deposit date:2017-09-13
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures and Inhibitor Interactions of Mouse and Dog MTH1 Reveal Species-Specific Differences in Affinity.
Biochemistry, 57, 2018
8AO8
DownloadVisualize
BU of 8ao8 by Molmil
Specific covalent inhibitor(9) of ERK2
Descriptor: 1,2-ETHANEDIOL, 1-[(2~{R})-2-(3-methylimidazol-4-yl)piperidin-1-yl]propan-1-one, Mitogen-activated protein kinase 1, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2023-05-24
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
8AOB
DownloadVisualize
BU of 8aob by Molmil
Specific covalent inhibitor(12) of ERK2
Descriptor: DI(HYDROXYETHYL)ETHER, Mitogen-activated protein kinase 1, SULFATE ION, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.623 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
8AO6
DownloadVisualize
BU of 8ao6 by Molmil
electrophilic inhibitor (7) of ERK2
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Mitogen-activated protein kinase 1, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.811 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
8AOF
DownloadVisualize
BU of 8aof by Molmil
Specific covalent inhibitor(16) of ERK2
Descriptor: 1,2-ETHANEDIOL, Mitogen-activated protein kinase 1, SULFATE ION, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.615 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
6I00
DownloadVisualize
BU of 6i00 by Molmil
Cryo-EM informed directed evolution of Nitrilase 4 leads to a change in quaternary structure.
Descriptor: Bifunctional nitrilase/nitrile hydratase NIT4
Authors:Mulelu, A.E, Woodward, J.D.
Deposit date:2018-10-24
Release date:2019-07-24
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM and directed evolution reveal howArabidopsisnitrilase specificity is influenced by its quaternary structure.
Commun Biol, 2, 2019
8AO5
DownloadVisualize
BU of 8ao5 by Molmil
Specific covalent inhibitor (6) of ERK2
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Mitogen-activated protein kinase 1, SULFATE ION, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.595 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
6S3F
DownloadVisualize
BU of 6s3f by Molmil
Moringa seed protein Mo-CBP3-4
Descriptor: 2S albumin, CHLORIDE ION, FORMIC ACID, ...
Authors:Moulin, M, Mossou, E, Mitchell, E.P, Haertlein, M, Forsyth, V.T, Rennie, A.R.
Deposit date:2019-06-25
Release date:2019-07-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Towards a molecular understanding of the water purification properties of Moringa seed proteins.
J Colloid Interface Sci, 554, 2019
8AO4
DownloadVisualize
BU of 8ao4 by Molmil
Specific covalent inhibitor (5) of ERK2
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Mitogen-activated protein kinase 1, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.825 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
5X6X
DownloadVisualize
BU of 5x6x by Molmil
Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
Descriptor: 1,2-ETHANEDIOL, mRNA capping enzyme P5
Authors:Nakamichi, Y, Higashiura, A, Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
8AOJ
DownloadVisualize
BU of 8aoj by Molmil
Specific covalent inhibitor of ERK2
Descriptor: 1,2-ETHANEDIOL, 1-[(2~{S})-2-(5-methyl-3-pyridin-4-yl-1~{H}-pyrazol-4-yl)pyrrolidin-1-yl]propan-1-one, DIMETHYL SULFOXIDE, ...
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
8AO3
DownloadVisualize
BU of 8ao3 by Molmil
Specific covalent inhibitor of ERK2
Descriptor: 2-chloranyl-~{N}-(1~{H}-indazol-5-ylmethyl)ethanamide, Mitogen-activated protein kinase 1, SULFATE ION
Authors:Cleasby, A.
Deposit date:2022-08-08
Release date:2022-09-28
Last modified:2022-10-05
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem., 65, 2022
7A7G
DownloadVisualize
BU of 7a7g by Molmil
Soluble epoxide hydrolase in complex with TK90
Descriptor: (2~{R})-2-[[4-[[4-methoxy-2-(trifluoromethyl)phenyl]methylcarbamoyl]phenyl]methyl]butanoic acid, Bifunctional epoxide hydrolase 2
Authors:Ni, X, Kramer, J.S, Kirchner, T, Proschak, E, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-08-28
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Combined Cardioprotective and Adipocyte Browning Effects Promoted by the Eutomer of Dual sEH/PPAR gamma Modulator.
J.Med.Chem., 64, 2021
6HN9
DownloadVisualize
BU of 6hn9 by Molmil
Nicomicin-1 -- Novel antimicrobial peptides from the Arctic polychaeta Nicomache minor provide new molecular insight into biological role of the BRICHOS domain
Descriptor: Nicomicin-1
Authors:Panteleev, P.V, Tsarev, A.V, Bolosov, I.A, Paramonov, A.S, Marggraf, M.B, Sychev, S.V, Shenkarev, Z.O, Ovchinnikova, T.V.
Deposit date:2018-09-14
Release date:2018-11-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel Antimicrobial Peptides from the Arctic PolychaetaNicomache minorProvide New Molecular Insight into Biological Role of the BRICHOS Domain.
Mar Drugs, 16, 2018

224931

数据于2024-09-11公开中

PDB statisticsPDBj update infoContact PDBjnumon