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PDB: 88675 results

6U9M
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MLL1 SET N3861I/Q3867L bound to inhibitor 16 (TC-5109)
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(thiophen-2-yl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine, GLYCEROL, Histone-lysine N-methyltransferase, ...
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2019-09-09
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
5M4N
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Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase
Descriptor: CHLORIDE ION, N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE, [2,4-bis(oxidanyl)phenyl]-[(2~{S})-2-methyl-6-(3-methylquinolin-2-yl)-3,4-dihydro-2~{H}-quinolin-1-yl]methanone, ...
Authors:Baker, L.M, Brough, P, Surgenor, A.
Deposit date:2016-10-18
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase.
J. Med. Chem., 60, 2017
6MG5
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BU of 6mg5 by Molmil
Structure of full-length human lambda-6A light chain JTO in complex with coumarin 1
Descriptor: 7-(diethylamino)-4-methyl-2H-1-benzopyran-2-one, Light chain JTO, PHOSPHATE ION
Authors:Morgan, G.J, Yan, N.L, Mortenson, D.E, Stanfield, R.L, Wilson, I.A, Kelly, J.W.
Deposit date:2018-09-12
Release date:2019-04-10
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilization of amyloidogenic immunoglobulin light chains by small molecules.
Proc.Natl.Acad.Sci.USA, 116, 2019
5LC3
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BU of 5lc3 by Molmil
Xray structure of mouse FAM3C ILEI monomer
Descriptor: Protein FAM3C
Authors:Johansson, P, Jansson, A.
Deposit date:2016-06-19
Release date:2017-08-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:The interleukin-like epithelial-mesenchymal transition inducer ILEI exhibits a non-interleukin-like fold and is active as a domain-swapped dimer.
J. Biol. Chem., 292, 2017
6M8R
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Crystal structure of the KCTD16 BTB domain in complex with GABAB2 peptide
Descriptor: BTB/POZ domain-containing protein KCTD16, Gamma-aminobutyric acid type B receptor subunit 2, MAGNESIUM ION
Authors:Zheng, S, Kruse, A.C.
Deposit date:2018-08-22
Release date:2019-02-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for KCTD-mediated rapid desensitization of GABABsignalling.
Nature, 567, 2019
6XHN
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Covalent complex of SARS-CoV main protease with 4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-3-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide
Descriptor: (3S)-3-{[N-(4-methoxy-1H-indole-2-carbonyl)-L-leucyl]amino}-2-oxo-4-[(3S)-2-oxopyrrolidin-3-yl]butyl 2-cyanobenzoate, 1,2-ETHANEDIOL, 3C-like proteinase
Authors:Gajiwala, K.S, Ferre, R.A, Ryan, K, Stewart, A.E.
Deposit date:2020-06-19
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.377 Å)
Cite:Discovery of Ketone-Based Covalent Inhibitors of Coronavirus 3CL Proteases for the Potential Therapeutic Treatment of COVID-19.
J.Med.Chem., 63, 2020
8T3J
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BU of 8t3j by Molmil
Crystal structure of native exfoliative toxin C (ExhC) from Mammaliicoccus sciuri
Descriptor: Exfoliative toxin C
Authors:Calil, F.A, Gismene, C, Hernandez Gonzalez, J.E, Ziem Nascimento, A.F, Santisteban, A.R.N, Arni, R.K, Barros Mariutti, R.
Deposit date:2023-06-07
Release date:2023-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Necrotic activity of ExhC from Mammaliicoccus sciuri is mediated by specific amino acid residues.
Int.J.Biol.Macromol., 254, 2024
6R7X
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BU of 6r7x by Molmil
CryoEM structure of calcium-bound human TMEM16K / Anoctamin 10 in detergent (2mM Ca2+, closed form)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Anoctamin-10, CALCIUM ION, ...
Authors:Pike, A.C.W, Bushell, S.R, Shintre, C.A, Tessitore, A, Baronina, A, Chu, A, Mukhopadhyay, S, Shrestha, L, Chalk, R, Burgess-Brown, N.A, Love, J, Huiskonen, J.T, Edwards, A.M, Arrowsmith, C.H, Bountra, C, Carpenter, E.P, Structural Genomics Consortium (SGC)
Deposit date:2019-03-29
Release date:2019-05-01
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K.
Nat Commun, 10, 2019
8SLZ
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BU of 8slz by Molmil
Crystal structure of phosphorylated (T357/S358) human MLKL pseudokinase domain
Descriptor: Mixed lineage kinase domain-like protein
Authors:Meng, Y, Davies, K.A, Czabotar, P.E, Murphy, J.M.
Deposit date:2023-04-25
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization.
Nat Commun, 14, 2023
8T3I
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BU of 8t3i by Molmil
Crystal structure of mutant exfoliative toxin C (ExhC) from Mammaliicoccus sciuri
Descriptor: Exfoliative toxin C
Authors:Gismene, C, Calil, F.A, Hernandez Gonzalez, J.E, Ziem Nascimento, A.F, Santisteban, A.R.N, Arni, R.K, Barros Mariutti, R.
Deposit date:2023-06-07
Release date:2023-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Necrotic activity of ExhC from Mammaliicoccus sciuri is mediated by specific amino acid residues.
Int.J.Biol.Macromol., 254, 2024
8SL1
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BU of 8sl1 by Molmil
Cryo-EM structure of PAPP-A2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Judge, R.A, Stoll, V.S, Eaton, D, Hao, Q, Bratkowski, M.A.
Deposit date:2023-04-20
Release date:2023-11-08
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Cryo-EM structure of human PAPP-A2 and mechanism of substrate recognition.
Commun Chem, 6, 2023
7A0O
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BU of 7a0o by Molmil
NMR structure of flagelliform spidroin (FlagSp) N-terminal domain from Trichonephila clavipes at pH 5.5
Descriptor: Flagelliform spidroin variant 1
Authors:Sarr, M, Kitoka, K, Walsh-White, K.-A, Kaldmae, M, Landreh, M, Rising, A, Johansson, J, Jaudzems, K, Kronqvist, N.
Deposit date:2020-08-10
Release date:2021-08-18
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The dimerization mechanism of the N-terminal domain of spider silk proteins is conserved despite extensive sequence divergence.
J.Biol.Chem., 298, 2022
5LIA
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BU of 5lia by Molmil
Crystal structure of murine autotaxin in complex with a small molecule inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Turnbull, A.P, Shah, P, Cheasty, A, Raynham, T, Pang, L, Owen, P.
Deposit date:2016-07-14
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Discovery of potent inhibitors of the lysophospholipase autotaxin.
Bioorg. Med. Chem. Lett., 26, 2016
5LK4
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BU of 5lk4 by Molmil
Structure of the Red Fluorescent Protein mScarlet at pH 7.8
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, TETRAETHYLENE GLYCOL, ...
Authors:Aumonier, S, Gotthard, G, Royant, A.
Deposit date:2016-07-20
Release date:2016-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:mScarlet: a bright monomeric red fluorescent protein for cellular imaging.
Nat. Methods, 14, 2017
6UGZ
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BU of 6ugz by Molmil
Human Carbonic Anhydrase IX-mimic complexed with SB4-208
Descriptor: 7-fluoro-1lambda~6~,2,4-benzothiadiazine-1,1,3(2H,4H)-trione, Carbonic anhydrase IX-mimic, ZINC ION
Authors:Murray, A.B, Lomelino, C.L, McKenna, R.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.306 Å)
Cite:"A Sweet Combination": Developing Saccharin and Acesulfame K Structures for Selectively Targeting the Tumor-Associated Carbonic Anhydrases IX and XII.
J.Med.Chem., 63, 2020
5LOK
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BU of 5lok by Molmil
X-ray structure of uridine phosphorylase from Vibrio cholerae in complex with cytidine and cytosine at 1.11 A resolution
Descriptor: 1,2-ETHANEDIOL, 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, 6-AMINOPYRIMIDIN-2(1H)-ONE, ...
Authors:Prokofev, I.I, Lashkov, A.A, Gabdoulkhakov, A.G, Dontsova, M.V, Betzel, C, Mikhailov, A.M.
Deposit date:2016-08-09
Release date:2017-08-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.109 Å)
Cite:X-ray structure of uridine phosphorylase from Vibrio cholerae in complex with cytidine and cytosine at 1.11 A resolution
To Be Published
6E81
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BU of 6e81 by Molmil
Crystal structure of the Corn aptamer in complex with ThT
Descriptor: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (36-MER)
Authors:Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:2018-07-27
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.721 Å)
Cite:Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence.
Cell Chem Biol, 26, 2019
7SEK
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BU of 7sek by Molmil
Solution structure of the zinc finger domain of murine MetAP1, complexed with ZNG N-terminal peptide
Descriptor: COBW domain-containing protein 1,Methionine aminopeptidase 1 fusion, ZINC ION
Authors:Edmonds, K.A, Jordan, M.R, Thalluri, K, Wu, H, Di Marchi, R, Giedroc, D.P.
Deposit date:2021-09-30
Release date:2022-06-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Zn-regulated GTPase metalloprotein activator 1 modulates vertebrate zinc homeostasis.
Cell, 185, 2022
8GM6
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BU of 8gm6 by Molmil
Structure of apurinic/apyrimidinic DNA lyase TK0353 from Thermococcus kodakarensis (Selenomethionine)
Descriptor: GLYCEROL, SULFATE ION, TK0353
Authors:Eckenroth, B.E, Gardner, A.F, Doublie, S.
Deposit date:2023-03-24
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.
J.Biol.Chem., 300, 2023
7A0I
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BU of 7a0i by Molmil
NMR structure of flagelliform spidroin (FlagSp) N-terminal domain from Trichonephila clavipes at pH 7.2
Descriptor: Flagelliform spidroin variant 1
Authors:Sarr, M, Kitoka, K, Walsh-White, K.-A, Kaldmae, M, Landreh, M, Rising, A, Johansson, J, Jaudzems, K, Kronqvist, N.
Deposit date:2020-08-09
Release date:2021-08-18
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The dimerization mechanism of the N-terminal domain of spider silk proteins is conserved despite extensive sequence divergence.
J.Biol.Chem., 298, 2022
6OL2
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BU of 6ol2 by Molmil
Crystallography of novel WNK1 and WNK3 inhibitors discovered from high-throughput-screening
Descriptor: ACETATE ION, GLYCEROL, N-[2-(5,8-dimethoxy-2-oxo-1,2-dihydroquinolin-3-yl)ethyl]-2-iodobenzamide, ...
Authors:Chlebowicz, J, Akella, R, Sekulski, K, Humphreys, J.M, Durbacz, M.Z, He, H, Rodan, A, Posner, B, Goldsmith, E.J.
Deposit date:2019-04-15
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallography of novel WNK1 and WNK3 inhibitors discovered from high throughput screening
To Be Published
5M0Y
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BU of 5m0y by Molmil
Crystal Structure of the CohScaA-XDocCipB type II complex from Clostridium thermocellum at 1.5Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cellulosome anchoring protein cohesin region, ...
Authors:Pinheiro, B.A, Bras, J.L, Carvalho, A.L, Fontes, C.M.G.A.
Deposit date:2016-10-06
Release date:2017-09-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Diverse specificity of cellulosome attachment to the bacterial cell surface.
Sci Rep, 6, 2016
8SMG
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BU of 8smg by Molmil
Structure of SPO1 phage Tad2 in complex with 1''-2' gcADPR
Descriptor: (1S,3R,4R,6R,9S,11R,14R,15S,16R,18R)-4-(6-amino-9H-purin-9-yl)-9,11,15,16,18-pentahydroxy-2,5,8,10,12,17-hexaoxa-9lambda~5~,11lambda~5~-diphosphatricyclo[12.2.1.1~3,6~]octadecane-9,11-dione, Gp34.65
Authors:Lu, A, Yirmiya, E, Leavitt, A, Avraham, C, Osterman, I, Garb, J, Antine, S.P, Mooney, S.E, Hobbs, S.J, Amitai, G, Sorek, R, Kranzusch, P.J.
Deposit date:2023-04-26
Release date:2023-11-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Phages overcome bacterial immunity via diverse anti-defence proteins.
Nature, 625, 2024
5IJ5
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BU of 5ij5 by Molmil
Crystal structure of Equine Serum Albumin in the presence of 50 mM zinc at pH 4.5
Descriptor: GLYCEROL, Serum albumin, ZINC ION
Authors:Handing, K.B, Majorek, K.A, Shabalin, I.G, Cymborowski, M.T, Zheng, H, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2016-03-01
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Circulatory zinc transport is controlled by distinct interdomain sites on mammalian albumins.
Chem Sci, 7, 2016
8T2R
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BU of 8t2r by Molmil
Structure of a group II intron ribonucleoprotein in the pre-ligation (pre-2F) state
Descriptor: 5'exon, AMMONIUM ION, CALCIUM ION, ...
Authors:Xu, L, Liu, T, Chung, K, Pyle, A.M.
Deposit date:2023-06-06
Release date:2023-11-22
Last modified:2024-01-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insights into intron catalysis and dynamics during splicing.
Nature, 624, 2023

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