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PDB: 89774 results

3NRP
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BU of 3nrp by Molmil
Crystal structure of 'as isolated' uropathogenic E. coli strain F11 FetP recombinantly expressed in the periplasm of E. coli BL21(DE3)
Descriptor: Periplasmic protein-probably involved in high-affinity Fe2+ transport
Authors:Chan, A.C.K, Murphy, M.E.P.
Deposit date:2010-06-30
Release date:2011-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Characterization of a Dipartite Iron Uptake System from Uropathogenic Escherichia coli Strain F11.
J.Biol.Chem., 286, 2011
5P8S
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BU of 5p8s by Molmil
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 361
Descriptor: endothiapepsin
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-06-28
Release date:2016-08-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.109 Å)
Cite:High-Throughput Crystallography: Reliable and Efficient Identification of Fragment Hits.
Structure, 24, 2016
8Q3L
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BU of 8q3l by Molmil
Human Gamma-D Crystallin R36S fresh serial crystallographic structure
Descriptor: Gamma-crystallin D
Authors:Yorke, B.A, Hill, J.A.
Deposit date:2023-08-04
Release date:2024-04-17
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An ultraviolet-driven rescue pathway for oxidative stress to eye lens protein human gamma-D crystallin.
Commun Chem, 7, 2024
3NPE
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BU of 3npe by Molmil
Structure of VP14 in complex with oxygen
Descriptor: 1,4-DIETHYLENE DIOXIDE, 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic, ...
Authors:Messing, S.A, Gabelli, S.B, Amzel, L.M.
Deposit date:2010-06-28
Release date:2010-11-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into maize viviparous14, a key enzyme in the biosynthesis of the phytohormone abscisic acid.
Plant Cell, 22, 2010
6QUY
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BU of 6quy by Molmil
NgCKK (N.Gruberi CKK) decorated 13pf taxol-GDP microtubule
Descriptor: CKK domain protein, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Atherton, J.M, Luo, Y, Xiang, S, Yang, C, Jiang, K, Stangier, M, Vemu, A, Cook, A, Wang, S, Roll-Mecak, A, Steinmetz, M.O, Akhmanova, A, Baldus, M, Moores, C.A.
Deposit date:2019-02-28
Release date:2019-11-27
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural determinants of microtubule minus end preference in CAMSAP CKK domains.
Nat Commun, 10, 2019
5B4U
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BU of 5b4u by Molmil
Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor malonate
Descriptor: 3-hydroxybutyrate dehydrogenase, CHLORIDE ION, MALONIC ACID, ...
Authors:Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A.
Deposit date:2016-04-19
Release date:2016-08-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase
Acta Crystallogr.,Sect.F, 72, 2016
6QVE
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BU of 6qve by Molmil
NgCKK (Naegleria Gruberi CKK) decorated 14pf taxol-GDP microtubule
Descriptor: Beta1-tubulin, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Atherton, J.M, Luo, Y, Xiang, S, Yang, C, Jiang, K, Stangier, M, Vemu, A, Cook, A, Wang, S, Roll-Mecak, A, Steinmetz, M.O, Akhmanova, A, Baldus, M, Moores, C.A.
Deposit date:2019-03-01
Release date:2019-11-27
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural determinants of microtubule minus end preference in CAMSAP CKK domains.
Nat Commun, 10, 2019
3NQ6
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BU of 3nq6 by Molmil
Crystal structure of the mutant P180A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with inhibitor 6-azaUMP
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, GLYCEROL, Orotidine 5'-phosphate decarboxylase
Authors:Fedorov, A.A, Fedorov, E.V, Wood, B.M, Gerlt, J.A, Almo, S.C.
Deposit date:2010-06-29
Release date:2011-05-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.494 Å)
Cite:Crystal structure of the mutant P180A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with inhibitor 6-azaUMP
To be Published
8QDF
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BU of 8qdf by Molmil
Engineered LmrR with Met-89 replaced by para-boronophenylalanine
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Rozeboom, H.J, Longwitz, L, Leveson-Gower, R.B, Roelfes, G.
Deposit date:2023-08-29
Release date:2024-05-01
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Boron catalysis in a designer enzyme.
Nature, 629, 2024
5BU7
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BU of 5bu7 by Molmil
Crystal structure of an engineered protein that forms nanotubes with tunable diameters
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ZINC ION
Authors:Brodin, J.D, Smith, S.J, Tezcan, F.A.
Deposit date:2015-06-03
Release date:2016-06-08
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Designed, Helical Protein Nanotubes with Tunable Diameters from a Single Building Block.
To be Published
3NYA
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BU of 3nya by Molmil
Crystal structure of the human beta2 adrenergic receptor in complex with the neutral antagonist alprenolol
Descriptor: (2S)-1-[(1-methylethyl)amino]-3-(2-prop-2-en-1-ylphenoxy)propan-2-ol, Beta-2 adrenergic receptor, Lysozyme, ...
Authors:Brown, M.A, Wacker, D, Fenalti, G, Katritch, V, Abagyan, R, Cherezov, V, Stevens, R.C, GPCR Network (GPCR)
Deposit date:2010-07-14
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Conserved Binding Mode of Human beta(2) Adrenergic Receptor Inverse Agonists and Antagonist Revealed by X-ray Crystallography
J.Am.Chem.Soc., 132, 2010
6QOD
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BU of 6qod by Molmil
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 7 (2-Amino-6-fluorobenzothiazole)
Descriptor: 6-fluoro-1,3-benzothiazol-2-amine, tRNA (guanine-N(1)-)-methyltransferase
Authors:Thomas, S.E, Whitehouse, A.J, Coyne, A.G, Abell, C, Mendes, V, Blundell, T.L.
Deposit date:2019-02-12
Release date:2020-03-04
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.852 Å)
Cite:Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.
Nucleic Acids Res., 48, 2020
8BWV
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BU of 8bwv by Molmil
Crystal Structure of SilF Cu(I)
Descriptor: COPPER (II) ION, SilF
Authors:Lithgo, R.M, Carr, S.B, Scott, D.J, Quigley, A.
Deposit date:2022-12-07
Release date:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:SilF structure with Ag(I) and Cu(I)
To Be Published
6QOJ
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BU of 6qoj by Molmil
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 13 (4-Hydroxyquinazoline)
Descriptor: 3,4-dihydroquinazolin-4-ol, tRNA (guanine-N(1)-)-methyltransferase
Authors:Thomas, S.E, Whitehouse, A.J, Coyne, A.G, Abell, C, Mendes, V, Blundell, T.L.
Deposit date:2019-02-12
Release date:2020-02-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.023 Å)
Cite:Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.
Nucleic Acids Res., 48, 2020
6EZW
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BU of 6ezw by Molmil
Crystal structure of a llama VHH antibody BCD090-M2 against human ErbB3 in space group C2
Descriptor: VHH antibody BCD090-M2
Authors:Eliseev, I.E, Yudenko, A.N, Vysochinskaya, V.V, Svirina, A.A, Evstratyeva, A.V, Drozhzhachih, M.S, Krendeleva, E.A, Vladimirova, A.K, Nemankin, T.A, Ekimova, V.M, Ulitin, A.B, Lomovskaya, M.I, Yakovlev, P.A, Moiseenko, F.V, Chakchir, O.B.
Deposit date:2017-11-16
Release date:2017-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.59842849 Å)
Cite:Crystal structures of a llama VHH antibody BCD090-M2 targeting human ErbB3 receptor.
F1000Res, 7, 2018
2DPP
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BU of 2dpp by Molmil
Crystal structure of thermostable Bacillus sp. RAPc8 nitrile hydratase
Descriptor: COBALT (II) ION, Nitrile hydratase alpha subunit, Nitrile hydratase beta subunit
Authors:Tsekoa, T.L, Tastan-Bishop, A.O, Cameron, R.A, Sewell, B.T, Sayed, M.F, Cowan, D.A.
Deposit date:2006-05-12
Release date:2007-05-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of thermostable Bacillus sp. RAPc8 nitrile hydratse
To be Published
5BNL
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BU of 5bnl by Molmil
Deciphering the Mechanism of Carbonic Anhydrase Inhibition with Coumarins and Thiocoumarins
Descriptor: (2E)-3-(2-HYDROXYPHENYL)ACRYLIC ACID, Carbonic anhydrase 2, MERCURY (II) ION, ...
Authors:Temperini, C, Maresca, A, Pochet, L, Masereel, B, Scozzafava, A, Supuran, C.T.
Deposit date:2015-05-26
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Deciphering the mechanism of carbonic anhydrase inhibition with coumarins and thiocoumarins.
J.Med.Chem., 53, 2010
3NZT
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BU of 3nzt by Molmil
2.0 Angstrom Crystal structure of Glutamate--Cysteine Ligase (gshA) ftom Francisella tularensis in Complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Glutamate--cysteine ligase, SULFATE ION
Authors:Minasov, G, Halavaty, A, Shuvalova, L, Dubrovska, I, Winsor, J, Papazisi, L, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-07-16
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:2.0 Angstrom Crystal structure of Glutamate--Cysteine Ligase (gshA) ftom Francisella tularensis in Complex with AMP.
To be Published
2P42
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BU of 2p42 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.8A resolution: SE3-mono-2 crystal form with three se-met sites (M34, M51, M83) in vhh scaffold
Descriptor: ANTIBODY CAB-RN05, MAGNESIUM ION, Ribonuclease pancreatic
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
8QQ1
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BU of 8qq1 by Molmil
SpNOX dehydrogenase domain, mutant F397W in complex with Flavin adenine dinucleotide (FAD)
Descriptor: BROMIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Oxidoreductase
Authors:Humm, A.S, Dupeux, F, Vermot, A, Petit-Harleim, I, Fieschi, F, Marquez, J.A.
Deposit date:2023-10-03
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:X-ray structure and enzymatic study of a bacterial NADPH oxidase highlight the activation mechanism of eukaryotic NOX.
Elife, 13, 2024
7SSE
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BU of 7sse by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with CYCA-117-70
Descriptor: DDB1- and CUL4-associated factor 1, N-[(3R)-1-(3-fluorophenyl)piperidin-3-yl]-6-(morpholin-4-yl)pyrimidin-4-amine
Authors:Kimani, S, Owen, J, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Shahani, V.M, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2021-11-10
Release date:2021-12-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets.
J.Chem.Inf.Model., 63, 2023
8QFY
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BU of 8qfy by Molmil
Crystal structure of high affinity TCR in complex with pHLA harbouring bacterial peptide
Descriptor: ACETATE ION, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Pengelly, R.J, Robinson, R.A.
Deposit date:2023-09-05
Release date:2024-05-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:An HLA-E-targeted TCR bispecific molecule redirects T cell immunity against Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 121, 2024
5BPN
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BU of 5bpn by Molmil
Crystal structure of nucleotide-free human Hsp70 NBD double mutant E268Q+R272K.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Heat shock 70 kDa protein 1A, ...
Authors:Narayanan, D, Engh, R.A.
Deposit date:2015-05-28
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nucleotide binding to variants of the HSP70-NBD.
To Be Published
1U7H
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BU of 1u7h by Molmil
Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Alam, S, Goodman, J.L, Wang, S, Ruzicka, F.J, Frey, P.A, Wedekind, J.E.
Deposit date:2004-08-03
Release date:2004-11-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ornithine Cyclodeaminase: Structure, Mechanism of Action, and Implications for the u-Crystallin Family;
Biochemistry, 43, 2004
8QXO
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BU of 8qxo by Molmil
Cryo-EM structure of tetrameric human SAMHD1 State V - Depleted relaxed
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024

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