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PDB: 89472 results

6VLU
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BU of 6vlu by Molmil
Factor XIa in complex with compound 7
Descriptor: CITRIC ACID, Coagulation factor XIa light chain, N-cyclohexyl-D-leucyl-N-[(1-aminoisoquinolin-6-yl)methyl]-4,4-difluoro-L-prolinamide
Authors:Lesburg, C.A, Fradera, X.
Deposit date:2020-01-27
Release date:2020-05-06
Last modified:2020-10-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Augmenting Hit Identification by Virtual Screening Techniques in Small Molecule Drug Discovery.
J.Chem.Inf.Model., 60, 2020
3TNU
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BU of 3tnu by Molmil
Heterocomplex of coil 2B domains of human intermediate filament proteins, keratin 5 (KRT5) and keratin 14 (KRT14)
Descriptor: Keratin, type I cytoskeletal 14, type II cytoskeletal 5
Authors:Lee, C.H, Kim, M.S, Leahy, D.J, Coulombe, P.A.
Deposit date:2011-09-02
Release date:2012-06-20
Last modified:2012-08-01
Method:X-RAY DIFFRACTION (3.005 Å)
Cite:Structural basis for heteromeric assembly and perinuclear organization of keratin filaments.
Nat.Struct.Mol.Biol., 19, 2012
1R36
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BU of 1r36 by Molmil
NMR-based structure of autoinhibited murine Ets-1 deltaN301
Descriptor: C-ets-1 protein
Authors:Lee, G.M, Donaldson, L.W, Pufall, M.A, Kang, H.-S, Pot, I, Graves, B.J, McIntosh, L.P.
Deposit date:2003-09-30
Release date:2004-11-09
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:The Structural and Dynamic Basis of Ets-1 DNA Binding Autoinhibition
J.Biol.Chem., 280, 2005
6CXO
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BU of 6cxo by Molmil
Complement component-9
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Complement component C9, ...
Authors:Law, R.H.P, Spicer, B.A, Caradoc-Davies, T.T.
Deposit date:2018-04-03
Release date:2018-09-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The first transmembrane region of complement component-9 acts as a brake on its self-assembly.
Nat Commun, 9, 2018
3TP7
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BU of 3tp7 by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V99E at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Robinson, A.C, Schlessman, J.L, Garcia-Moreno E, B.
Deposit date:2011-09-07
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Staphylococcal nuclease variant Delta+PHS V99E at cryogenic temperature
To be Published
4YQP
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BU of 4yqp by Molmil
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Descriptor: 6-{[2-(morpholin-4-yl)benzyl]amino}pyridine-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
Authors:Elkins, P.A, Bonnette, W.G, Madauss, K.P.
Deposit date:2015-03-13
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To Be Published
5KXK
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BU of 5kxk by Molmil
Hen Egg White Lysozyme at 100K, Data set 1
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
Deposit date:2016-07-20
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.198 Å)
Cite:Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
3I3W
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BU of 3i3w by Molmil
Structure of a phosphoglucosamine mutase from Francisella tularensis
Descriptor: Phosphoglucosamine mutase, ZINC ION
Authors:Brunzelle, J.S, Wawrzak, Z, Skarina, T, Onopriyenko, O, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-07-01
Release date:2010-01-19
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a phosphoglucosamine mutase from Francisella tularensis
To be Published
4YBJ
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BU of 4ybj by Molmil
Type II Dasatinib Analog Crystallized with c-Src Kinase
Descriptor: 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(3-{[3-(trifluoromethyl)benzoyl]amino}phenyl)-1,3-thiazole-5-carboxamide, Proto-oncogene tyrosine-protein kinase Src
Authors:Kwarcinski, F.E, Brandvold, K.B, Johnson, T.K, Phadke, S, Meagher, J.L, Seeliger, M.A, Stuckey, J.A, Soellner, M.B.
Deposit date:2015-02-18
Release date:2016-03-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Conformation-Selective Analogues of Dasatinib Reveal Insight into Kinase Inhibitor Binding and Selectivity.
Acs Chem.Biol., 11, 2016
3UWJ
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BU of 3uwj by Molmil
Human Thrombin In Complex With MI353
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hirudin variant-2, N-(benzylsulfonyl)-D-leucyl-N-(4-carbamimidoylbenzyl)-L-prolinamide, ...
Authors:Biela, A, Heine, A, Klebe, G.
Deposit date:2011-12-02
Release date:2012-12-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ligand binding stepwise disrupts water network in thrombin: enthalpic and entropic changes reveal classical hydrophobic effect
J.Med.Chem., 55, 2012
6VOC
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BU of 6voc by Molmil
icosahedral symmetry reconstruction of brome mosaic virus (RNA 3+4)
Descriptor: Capsid protein
Authors:Beren, C, Cui, Y.X, Chakravarty, A, Yang, X, Rao, A.L.N, Knobler, C.M, Zhou, Z.H, Gelbart, W.M.
Deposit date:2020-01-30
Release date:2020-05-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Genome organization and interaction with capsid protein in a multipartite RNA virus.
Proc.Natl.Acad.Sci.USA, 117, 2020
5X2O
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BU of 5x2o by Molmil
Crystal structure of the medaka fish taste receptor T1r2a-T1r3 ligand binding domains in complex with L-arginine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ARGININE, CALCIUM ION, ...
Authors:Nuemket, N, Yasui, N, Atsumi, N, Yamashita, A.
Deposit date:2017-02-02
Release date:2017-05-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
8UUV
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BU of 8uuv by Molmil
SARS-CoV-2 papain-like protease (PLpro) with inhibitor Jun12197
Descriptor: CHLORIDE ION, N-{(1R)-1-[(3P,5P)-3-(1-cyclopropyl-1H-pyrazol-4-yl)-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide, Papain-like protease nsp3, ...
Authors:Ansari, A, Tan, B, Arnold, E, Ruiz, F.X, Wang, J.
Deposit date:2023-11-02
Release date:2024-04-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Design of a SARS-CoV-2 papain-like protease inhibitor with antiviral efficacy in a mouse model.
Science, 383, 2024
4YAV
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BU of 4yav by Molmil
Crystal structure of LigG in complex with B-glutathionyl-acetoveratrone (GS-AV) from Sphingobium sp. strain SYK-6
Descriptor: Glutathione S-transferase, L-gamma-glutamyl-3-{(E)-[2-(3,4-dimethoxyphenyl)-2-oxoethylidene]-lambda~4~-sulfanyl}-L-alanylglycine, SULFATE ION
Authors:Pereira, J.H, McAndrew, R.P, Heins, R.A, Sale, K.L, Simmons, B.A, Adams, P.D.
Deposit date:2015-02-17
Release date:2016-03-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin beta-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6.
J.Biol.Chem., 291, 2016
6ECP
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BU of 6ecp by Molmil
The human methylenetetrahydrofolate dehydrogenase/cyclohydrolase (FolD) complexed with NADP and inhibitor LY249543
Descriptor: Methylenetetrahydrofolate dehydrogenase cyclohydrolase, N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Bueno, R.V, Dawson, A, Hunter, W.N.
Deposit date:2018-08-08
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An assessment of three human methylenetetrahydrofolate dehydrogenase/cyclohydrolase-ligand complexes following further refinement.
Acta Crystallogr F Struct Biol Commun, 75, 2019
8VG8
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BU of 8vg8 by Molmil
Crystal Structure of T115A Variant of D-Dopachrome Tautomerase (D-DT) Bound to 4CPPC
Descriptor: 4-(3-carboxyphenyl)pyridine-2,5-dicarboxylic acid, D-dopachrome decarboxylase
Authors:Parkins, A, Pilien, A, Wolff, A, Thompson, M.C, Pantouris, G.
Deposit date:2023-12-23
Release date:2024-05-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:The C-terminal Region of D-DT Regulates Molecular Recognition for Protein-Ligand Complexes.
J.Med.Chem., 67, 2024
6VP5
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BU of 6vp5 by Molmil
Ethylene forming enzyme (EFE) D191E variant in complex with Fe(II), L-arginine, and 2OG
Descriptor: 2-OXOGLUTARIC ACID, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-oxoglutarate-dependent ethylene/succinate-forming enzyme, ...
Authors:Davis, K.M, Copeland, R.A, Boal, A.K.
Deposit date:2020-02-01
Release date:2021-02-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.
J.Am.Chem.Soc., 143, 2021
3BW8
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BU of 3bw8 by Molmil
Crystal structure of the Clostridium limosum C3 exoenzyme
Descriptor: Mono-ADP-ribosyltransferase C3, SULFATE ION
Authors:Vogelsgesang, M, Stieglitz, B, Herrmann, C, Pautsch, A, Aktories, K.
Deposit date:2008-01-08
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the Clostridium limosum C3 exoenzyme.
Febs Lett., 582, 2008
5M7I
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BU of 5m7i by Molmil
Crystal structure of GH125 1,6-alpha-mannosidase mutant from Clostridium perfringens in complex with 1,6-alpha-mannobiose
Descriptor: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose, exo-alpha-1,6-mannosidase
Authors:Males, A, Alonso-Gil, S, Fernandes, P, Williams, S.J, Rovira, C, Davies, G.J.
Deposit date:2016-10-27
Release date:2016-11-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Computational Design of Experiment Unveils the Conformational Reaction Coordinate of GH125 alpha-Mannosidases.
J. Am. Chem. Soc., 139, 2017
4YD9
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BU of 4yd9 by Molmil
Crystal structure of squid hemocyanin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CU2-O2 CLUSTER, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Matsuno, A, Gai, Z, Kato, K, Tanaka, Y, Yao, M.
Deposit date:2015-02-21
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 angstrom Resolution
Structure, 23, 2015
6VP6
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BU of 6vp6 by Molmil
Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 2, MAGNESIUM ION
Authors:Leschziner, A, Deniston, C, Lahiri, I.
Deposit date:2020-02-01
Release date:2020-08-26
Last modified:2020-12-23
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structure of LRRK2 in Parkinson's disease and model for microtubule interaction.
Nature, 588, 2020
8VFW
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BU of 8vfw by Molmil
Crystal Structure of V113N D-Dopachrome Tautomerase (D-DT)
Descriptor: CITRIC ACID, D-dopachrome decarboxylase
Authors:Parkins, A, Wolff, A, Thompson, M.C, Pantouris, G.
Deposit date:2023-12-22
Release date:2024-05-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:The C-terminal Region of D-DT Regulates Molecular Recognition for Protein-Ligand Complexes.
J.Med.Chem., 67, 2024
8UN9
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BU of 8un9 by Molmil
Crystal structure of the MrfB exonuclease catalytic core
Descriptor: Exonuclease MrfB, MAGNESIUM ION
Authors:Manthei, K.A, Nandakumar, J, Simmons, L.A.
Deposit date:2023-10-18
Release date:2024-05-01
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB.
Nucleic Acids Res., 52, 2024
8VFN
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BU of 8vfn by Molmil
Crystal Structure of WT D-Dopachrome Tautomerase (D-DT) at 310K
Descriptor: D-dopachrome decarboxylase
Authors:Parkins, A, Pilien, A, Wolff, A, Thompson, M.C, Pantouris, G.
Deposit date:2023-12-21
Release date:2024-05-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:The C-terminal Region of D-DT Regulates Molecular Recognition for Protein-Ligand Complexes.
J.Med.Chem., 67, 2024
4HA1
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BU of 4ha1 by Molmil
MutB inactive double mutant D200A-D415N in complex with isomaltulose
Descriptor: 6-O-alpha-D-glucopyranosyl-D-fructose, CALCIUM ION, Sucrose isomerase, ...
Authors:Lipski, A, Haser, R, Aghajari, N.
Deposit date:2012-09-25
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Insights into product binding in sucrose isomerases from crystal structures of MutB from Rhizobium sp.
To be Published

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