Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 results

5TGK
DownloadVisualize
BU of 5tgk by Molmil
Nucleotide-binding domain 1 of the human cystic fibrosis transmembrane conductance regulator (CFTR) with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Cystic fibrosis transmembrane conductance regulator, MAGNESIUM ION
Authors:Wang, C, Aleksandrov, A.A, Yang, Z, Forouhar, F, Proctor, E, Kota, P, An, J, Kaplan, A, Khazanov, N, Boel, G, Stockwell, B.R, Senderowitz, H, Dokholyan, N.V, Riordan, J.R, Brouillette, C.G, Hunt, J.F.
Deposit date:2016-09-28
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.912 Å)
Cite:Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator.
J. Biol. Chem., 2018
6B56
DownloadVisualize
BU of 6b56 by Molmil
Crystal Structure of Purine Nucleoside Phosphorylase Isoform 2 from Schistosoma mansoni in complex with 5-butylpyridine-2-carboxylic acid
Descriptor: 5-butylpyridine-2-carboxylic acid, DIMETHYL SULFOXIDE, Purine nucleoside phosphorylase
Authors:Faheem, M, Neto, J.B, Collins, P, Pearce, N.M, Valadares, N.F, Bird, L, Pereira, H.M, Delft, F.V, Barbosa, J.A.R.G.
Deposit date:2017-09-28
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystal Structure of Purine Nucleoside Phosphorylase Isoform 2 from Schistosoma mansoni in complex with 5-butylpyridine-2-carboxylic acid
To Be Published
5FQL
DownloadVisualize
BU of 5fql by Molmil
Insights into Hunter syndrome from the structure of iduronate-2- sulfatase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Demydchuk, M, Hill, C.H, Zhou, A, Bunkoczi, G, Stein, P.E, Marchesan, D, Deane, J.E, Read, R.J.
Deposit date:2015-12-11
Release date:2017-01-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insights into Hunter syndrome from the structure of iduronate-2-sulfatase.
Nat Commun, 8, 2017
7ELS
DownloadVisualize
BU of 7els by Molmil
Crystal structure of xanthine riboswitch with 8-azaxanthine
Descriptor: 8-AZAXANTHINE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
6F87
DownloadVisualize
BU of 6f87 by Molmil
Crystal structure of P. abyssi Sua5 complexed with L-threonine and PPi
Descriptor: PYROPHOSPHATE 2-, THREONINE, Threonylcarbamoyl-AMP synthase
Authors:Pichard-Kostuch, A, Zhang, W, Liger, D, Daugeron, M.C, Letoquart, J, Li de la Sierra-Gallay, I, Forterre, P, Collinet, B, van Tilbeurgh, H, Basta, T.
Deposit date:2017-12-12
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structure-function analysis of Sua5 protein reveals novel functional motifs required for the biosynthesis of the universal t6A tRNA modification.
RNA, 24, 2018
6B4T
DownloadVisualize
BU of 6b4t by Molmil
Crystal Structure of Purine Nucleoside Phosphorylase Isoform 2 from Schistosoma mansoni in complex with 4-methylpyridin-2-ol
Descriptor: 4-methylpyridin-2-ol, DIMETHYL SULFOXIDE, Purine nucleoside phosphorylase
Authors:Faheem, M, Neto, J.B, Collins, P, Pearce, N.M, Valadares, N.F, Bird, L, Pereira, H.M, Delft, F.V, Barbosa, J.A.R.G.
Deposit date:2017-09-27
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal Structure of Purine Nucleoside Phosphorylase Isoform 2 from Schistosoma mansoni in complex with 4-methylpyridin-2-ol
To Be Published
7ELQ
DownloadVisualize
BU of 7elq by Molmil
Crystal structure of xanthine riboswitch with xanthine, manganese saok
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
5T5B
DownloadVisualize
BU of 5t5b by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF 10E8 FAB LIGHT CHAIN MUTANT5 AND T117V2 HIV-1 MPER SCAFFOLD
Descriptor: 10E8 EPITOPE SCAFFOLD T117V2, Antibody 10E8 FAB HEAVY CHAIN, Antibody 10E8 FAB LIGHT CHAIN MUTATED, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2016-08-30
Release date:2017-03-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design.
PLoS Pathog., 13, 2017
7ELP
DownloadVisualize
BU of 7elp by Molmil
Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, IRIDIUM ION, MAGNESIUM ION, ...
Authors:Xu, X.C, Ren, A.M.
Deposit date:2021-04-12
Release date:2021-06-30
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res., 49, 2021
6UY1
DownloadVisualize
BU of 6uy1 by Molmil
Crystal structure of the Sth1 bromodomain from Saccharomyces cerevisiae at 2.2 Angstrom resolution
Descriptor: MAGNESIUM ION, Nuclear protein STH1/NPS1
Authors:Stavropoulos, P, Hoelz, A.
Deposit date:2019-11-09
Release date:2019-12-04
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of the Sth1 bromodomain from Saccharomyces cerevisiae at 2.2 Angstrom resolution
To Be Published
4JI1
DownloadVisualize
BU of 4ji1 by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ...
Authors:Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.144 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
6FEH
DownloadVisualize
BU of 6feh by Molmil
Solution Structure of CaM/Kv7.2-hAB Complex
Descriptor: CALCIUM ION, Calmodulin-1, Potassium voltage-gated channel subfamily KQT member 2,Potassium voltage-gated channel subfamily KQT member 2
Authors:Bernardo-Seisdedos, G, Villarroel, A, Millet, O.
Deposit date:2018-01-02
Release date:2018-02-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis and energy landscape for the Ca2+gating and calmodulation of the Kv7.2 K+channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5D5X
DownloadVisualize
BU of 5d5x by Molmil
Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA
Descriptor: Putative transcription factor, SSRE DNA strand 1, SSRE DNA strand 2
Authors:Neudegger, T, Verghese, J, Hayer-Hartl, M, Hartl, F.U, Bracher, A.
Deposit date:2015-08-11
Release date:2015-12-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of human heat-shock transcription factor 1 in complex with DNA.
Nat.Struct.Mol.Biol., 23, 2016
6FGT
DownloadVisualize
BU of 6fgt by Molmil
Crystal Structure of BAZ2B bromodomain in complex with 1-methylpyridinone compound 3
Descriptor: Bromodomain adjacent to zinc finger domain protein 2B, ~{N}-[(1-azanylcyclohexyl)methyl]-1-methyl-6-oxidanylidene-pyridine-3-carboxamide
Authors:Dalle Vedove, A, Spiliotopoulos, D, Lolli, G, Caflisch, A.
Deposit date:2018-01-11
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Analysis of Small-Molecule Binding to the BAZ2A and BAZ2B Bromodomains.
ChemMedChem, 13, 2018
5D6Q
DownloadVisualize
BU of 5d6q by Molmil
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-ethyl-3-{4-[(E)-2-(pyridin-3-yl)ethenyl]-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl}urea, DNA gyrase subunit B, ...
Authors:Zhang, J, Yang, Q, Cross, J.B, Romero, J.A.C, Ryan, M.D, Lippa, B, Dolle, R.E, Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C.
Deposit date:2015-08-12
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Discovery of Azaindole Ureas as a Novel Class of Bacterial Gyrase B Inhibitors.
J.Med.Chem., 58, 2015
7ROY
DownloadVisualize
BU of 7roy by Molmil
The structure of the Fem1B:FNIP1 complex
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Folliculin-interacting protein 1, Protein fem-1 homolog B, ...
Authors:Gee, C.L, Mena, E.L, Manford, A.G, Rape, M.
Deposit date:2021-08-02
Release date:2021-10-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis and regulation of the reductive stress response.
Cell, 184, 2021
1KQE
DownloadVisualize
BU of 1kqe by Molmil
Solution structure of a linked shortened gramicidin A in benzene/acetone 10:1
Descriptor: MINI-GRAMICIDIN A
Authors:Arndt, H.D, Bockelmann, D, Knoll, A, Lamberth, S, Griesinger, C, Koert, U.
Deposit date:2002-01-05
Release date:2002-11-27
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Cation Control in Functional Helical Programming: Structures of a D,L-Peptide Ion Channel
Angew.Chem.Int.Ed.Engl., 41, 2002
8V7W
DownloadVisualize
BU of 8v7w by Molmil
Room-temperature X-ray structure of SARS-CoV-2 main protease catalytic domain C145A precursor, residues nsp4(-6)-1-199-6H
Descriptor: Replicase polyprotein 1ab
Authors:Kovalevsky, A, Coates, L.
Deposit date:2023-12-04
Release date:2024-05-29
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Visualizing the Active Site Oxyanion Loop Transition Upon Ensitrelvir Binding and Transient Dimerization of SARS-CoV-2 Main Protease.
J.Mol.Biol., 436, 2024
3JPO
DownloadVisualize
BU of 3jpo by Molmil
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate
Descriptor: 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Batra, V.K, Upton, J, Kashmerov, B, Beard, W.A, Wilson, S.H, Goodman, M.F, McKenna, C.E.
Deposit date:2009-09-04
Release date:2010-06-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Halogenated beta,gamma-Methylene- and Ethylidene-dGTP-DNA Ternary Complexes with DNA Polymerase beta: Structural Evidence for Stereospecific Binding of the Fluoromethylene Analogues.
J.Am.Chem.Soc., 132, 2010
6FHP
DownloadVisualize
BU of 6fhp by Molmil
DAIP in complex with a C-terminal fragment of thermolysin
Descriptor: Dispase autolysis-inducing protein, Thermolysin
Authors:Schmelz, S, Fiebig, D, Fuchsbauer, H.L, Blankenfeldt, W, Scrima, A.
Deposit date:2018-01-15
Release date:2018-09-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Destructive twisting of neutral metalloproteases: the catalysis mechanism of the Dispase autolysis-inducing protein from Streptomyces mobaraensis DSM 40487.
FEBS J., 285, 2018
5T98
DownloadVisualize
BU of 5t98 by Molmil
Crystal structure of BuGH2Awt
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glycoside Hydrolase
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2016-09-09
Release date:2017-09-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Nat Commun, 9, 2018
5H9M
DownloadVisualize
BU of 5h9m by Molmil
Crystal structure of siah2 SBD domain
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase SIAH2, PENTAETHYLENE GLYCOL, ...
Authors:Dong, A, Zhang, Q, Walker, J.R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Tong, Y, Structural Genomics Consortium (SGC)
Deposit date:2015-12-28
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.761 Å)
Cite:Crystal structure of siah2 SBD domain
to be published
8EP7
DownloadVisualize
BU of 8ep7 by Molmil
Crystal Structure of the Ketol-acid Reductoisomerase from Bacillus anthracis in complex with NADP
Descriptor: ACETIC ACID, Ketol-acid reductoisomerase (NADP(+)) 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Kim, Y, Maltseva, N, Osipiuk, J, Gu, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-10-05
Release date:2022-10-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Ketol-acid Reductoisomerase from Bacillus anthracis in the complex with NADP.
To Be Published
3JS1
DownloadVisualize
BU of 3js1 by Molmil
Crystal structure of adipocyte fatty acid binding protein covalently modified with 4-hydroxy-2-nonenal
Descriptor: Adipocyte fatty acid-binding protein, PHOSPHATE ION
Authors:Hellberg, K, Grimsrud, P.A, Kruse, A.C, Banaszak, L.J, Ohlendorf, D.H, Bernlohr, D.A.
Deposit date:2009-09-09
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:X-ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4-hydroxy-2-nonenal.
Protein Sci., 19, 2010
3JSP
DownloadVisualize
BU of 3jsp by Molmil
Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex
Descriptor: DNA (5'-D(*TP*AP*TP*AP*CP*TP*GP*TP*AP*TP*GP*CP*GP*CP*AP*TP*AP*CP*AP*GP*TP*A)-3'), LexA repressor
Authors:Zhang, A.P.P, Pigli, Y.Z, Rice, P.A.
Deposit date:2009-09-10
Release date:2010-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the LexA-DNA complex and implications for SOS box measurement.
Nature, 466, 2010

224931

건을2024-09-11부터공개중

PDB statisticsPDBj update infoContact PDBjnumon